Wall clock time and date at job start Mon Mar 30 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47394 * 240.00302 * 3 2 1 5 5 H 1.48499 * 109.47408 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46707 * 120.00522 * 3 2 1 7 7 C 1.37874 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47067 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47128 * 180.02562 * 11 10 9 13 13 C 1.50649 * 111.00456 * 61.90705 * 12 11 10 14 14 C 1.55842 * 101.02986 * 170.23859 * 13 12 11 15 15 C 1.55859 * 103.60401 * 327.61176 * 14 13 12 16 16 C 1.50653 * 110.99848 * 170.00022 * 12 11 10 17 17 C 1.52997 * 115.88372 * 63.34510 * 16 12 11 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 12 19 19 O 1.20826 * 119.99939 * 0.02562 * 18 17 16 20 20 O 1.34230 * 120.00046 * 179.97438 * 18 17 16 21 21 C 1.55855 * 101.02439 * 297.64686 * 16 12 11 22 22 C 1.54833 * 103.52191 * 327.00852 * 21 16 12 23 23 H 0.97003 * 119.99667 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47013 * 59.99473 * 9 7 2 25 25 H 1.08999 * 109.46688 * 300.00104 * 9 7 2 26 26 H 1.08999 * 109.47438 * 59.99897 * 10 9 7 27 27 H 1.08999 * 109.47523 * 299.99757 * 10 9 7 28 28 H 1.08993 * 109.47438 * 59.99939 * 11 10 9 29 29 H 1.09000 * 109.46856 * 299.99662 * 11 10 9 30 30 H 1.09001 * 115.87393 * 296.65164 * 13 12 11 31 31 H 1.09004 * 110.61410 * 85.51430 * 14 13 12 32 32 H 1.08999 * 110.61445 * 208.33545 * 14 13 12 33 33 H 1.09003 * 110.08576 * 241.11197 * 15 14 13 34 34 H 1.08997 * 111.59433 * 117.82353 * 15 14 13 35 35 H 1.09002 * 109.47153 * 59.99848 * 17 16 12 36 36 H 1.09001 * 109.46832 * 300.00039 * 17 16 12 37 37 H 0.96691 * 117.00026 * 180.02562 * 20 18 17 38 38 H 1.08994 * 110.61279 * 85.52001 * 21 16 12 39 39 H 1.09007 * 110.60618 * 208.49949 * 21 16 12 40 40 H 1.08996 * 110.61249 * 241.49619 * 22 21 16 41 41 H 1.08998 * 110.74608 * 118.57039 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9870 -0.0025 12 7 2.4349 -6.1036 -0.0031 13 6 3.2893 -6.0843 1.2376 14 6 4.0056 -7.4640 1.1278 15 6 2.9476 -8.3719 0.4311 16 6 1.7330 -7.4141 0.2405 17 6 0.7191 -7.8368 -0.8245 18 6 0.1077 -9.1592 -0.4393 19 8 0.4476 -9.7072 0.5825 20 8 -0.8153 -9.7279 -1.2307 21 6 1.1520 -7.1803 1.6677 22 6 2.2102 -6.2760 2.3457 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8902 25 1 0.6248 -2.5570 0.8897 26 1 2.8727 -3.6047 0.8877 27 1 2.8712 -3.6039 -0.8923 28 1 0.8533 -5.0442 -0.8921 29 1 0.8541 -5.0454 0.8878 30 1 3.9363 -5.2151 1.3561 31 1 4.8976 -7.3849 0.5064 32 1 4.2611 -7.8435 2.1171 33 1 2.6814 -9.2043 1.0825 34 1 3.3038 -8.7362 -0.5325 35 1 1.2224 -7.9360 -1.7862 36 1 -0.0640 -7.0824 -0.9003 37 1 -1.1790 -10.5759 -0.9418 38 1 0.1904 -6.6701 1.6117 39 1 1.0556 -8.1254 2.2022 40 1 2.6383 -6.7727 3.2163 41 1 1.7751 -5.3172 2.6276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714124538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:47 Heat of formation + Delta-G solvation = -106.563076 kcal Electronic energy + Delta-G solvation = -21161.629206 eV Core-core repulsion = 18040.304605 eV Total energy + Delta-G solvation = -3121.324601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.24269 -40.80370 -37.08893 -36.23456 -34.28871 -33.12678 -31.69728 -31.01041 -28.20309 -27.78390 -24.68181 -23.20531 -22.94996 -22.31847 -20.17792 -19.76679 -19.00973 -18.41880 -17.35546 -16.91381 -16.87716 -16.66441 -16.42955 -16.08199 -15.25390 -14.58256 -14.37192 -13.96304 -13.84425 -13.68953 -13.42311 -13.16786 -13.05867 -12.90252 -12.65932 -12.57821 -12.39472 -12.28596 -12.13335 -11.94428 -11.83041 -11.76528 -11.44610 -11.36718 -11.24860 -11.00068 -10.88456 -10.53774 -9.51191 -8.19269 -6.30164 1.24587 1.40239 1.43254 1.51155 2.02278 2.41591 3.00613 3.13926 3.46766 3.53641 3.79126 4.00961 4.09964 4.23473 4.25619 4.29367 4.37244 4.42156 4.52908 4.57870 4.65921 4.69236 4.78391 4.84719 4.93515 5.01806 5.07280 5.09136 5.19058 5.22507 5.31681 5.33689 5.38563 5.52975 5.65594 5.74446 5.81845 5.86884 6.06541 6.28155 6.86379 7.04905 7.39036 8.92396 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028221 B = 0.004204 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.937759 B = 6658.260640 C = 7240.254410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.088 4.088 11 C 0.043 3.957 12 N -0.489 5.489 13 C 0.041 3.959 14 C -0.107 4.107 15 C -0.097 4.097 16 C 0.079 3.921 17 C -0.087 4.087 18 C 0.492 3.508 19 O -0.533 6.533 20 O -0.514 6.514 21 C -0.137 4.137 22 C -0.150 4.150 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.012 1.012 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.428 0.572 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -20.518 0.247 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.125 4.125 11 C -0.085 4.085 12 N -0.212 5.212 13 C -0.067 4.067 14 C -0.145 4.145 15 C -0.135 4.135 16 C -0.011 4.011 17 C -0.125 4.125 18 C 0.335 3.665 19 O -0.423 6.423 20 O -0.328 6.328 21 C -0.176 4.176 22 C -0.189 4.189 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.006 0.994 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.128 0.872 37 H 0.290 0.710 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.534 -20.129 -0.186 20.438 hybrid contribution -0.875 0.720 1.042 1.540 sum 2.659 -19.408 0.857 19.608 Atomic orbital electron populations 1.70088 1.07785 1.27784 1.51720 1.25959 0.95745 1.03281 0.94716 0.85529 0.78315 0.78189 0.79194 1.19149 1.20791 1.19225 1.21658 0.93468 0.92428 1.50515 0.92365 1.18945 0.94352 0.93064 0.94596 1.21357 0.97930 0.92820 1.00432 1.22287 0.94859 0.90923 1.00445 1.67744 1.16425 1.00522 1.36510 1.24476 0.95362 0.98974 0.87908 1.22749 0.97846 0.92795 1.01090 1.22712 0.93309 0.96465 1.01039 1.23350 0.93849 0.91704 0.92183 1.20822 0.98763 0.91939 1.00995 1.23131 0.76091 0.86821 0.80436 1.90691 1.60671 1.64517 1.26381 1.84498 1.53443 1.41893 1.52945 1.23155 0.97893 1.00012 0.96544 1.23226 0.97059 0.99198 0.99435 0.92798 0.99001 0.99370 0.93325 0.93126 0.91310 0.94569 0.87253 0.90716 0.90071 0.90665 0.90848 0.85159 0.87223 0.70970 0.93051 0.90158 0.89824 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.50 4.97 29.85 0.15 1.65 16 10 C -0.09 -3.67 5.07 30.59 0.15 -3.52 16 11 C 0.04 1.49 4.33 86.30 0.37 1.87 16 12 N -0.49 -14.10 5.59 -781.50 -4.37 -18.47 16 13 C 0.04 1.09 4.25 46.15 0.20 1.29 16 14 C -0.11 -2.27 6.46 32.57 0.21 -2.06 16 15 C -0.10 -2.11 5.46 32.57 0.18 -1.93 16 16 C 0.08 1.90 0.71 4.76 0.00 1.90 16 17 C -0.09 -1.79 5.51 29.85 0.16 -1.63 16 18 C 0.49 9.63 8.04 71.24 0.57 10.20 16 19 O -0.53 -12.77 13.78 21.97 0.30 -12.46 16 20 O -0.51 -7.43 13.42 -51.41 -0.69 -8.12 16 21 C -0.14 -3.57 4.58 32.21 0.15 -3.42 16 22 C -0.15 -3.98 5.62 32.21 0.18 -3.80 16 23 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.05 2.00 6.62 -2.39 -0.02 1.98 16 27 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.36 7.57 -2.39 -0.02 2.34 16 29 H 0.04 1.29 4.87 -2.39 -0.01 1.28 16 30 H 0.11 3.08 7.01 -2.39 -0.02 3.06 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.50 7.82 -2.39 -0.02 1.48 16 33 H 0.07 1.68 6.78 -2.39 -0.02 1.66 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.11 2.29 7.46 -2.39 -0.02 2.27 16 37 H 0.43 2.43 9.10 -74.06 -0.67 1.76 16 38 H 0.05 1.44 7.18 -2.39 -0.02 1.42 16 39 H 0.08 2.08 6.78 -2.38 -0.02 2.06 16 40 H 0.08 1.91 7.82 -2.39 -0.02 1.89 16 41 H 0.05 1.56 7.38 -2.39 -0.02 1.54 16 Total: -1.00 -68.37 317.81 0.93 -67.43 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.35 Total: 12.11 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 3.03 Total: -30.08 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -4.08 Total: -75.54 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.39 Total: -20.58 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.37 0.93 -67.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714124538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.130 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds