Wall clock time and date at job start Mon Mar 30 2020 06:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47091 * 2 1 4 4 C 1.53002 * 109.47314 * 239.99816 * 2 1 3 5 5 C 1.50697 * 109.47449 * 172.92303 * 4 2 1 6 6 H 1.08008 * 119.99683 * 354.26085 * 5 4 2 7 7 C 1.37878 * 120.00145 * 174.25541 * 5 4 2 8 8 N 1.31511 * 119.99837 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99745 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47382 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47208 * 120.00622 * 9 7 5 12 12 H 1.48510 * 109.46902 * 240.00170 * 9 7 5 13 13 N 1.46899 * 109.47159 * 119.99967 * 2 1 3 14 14 C 1.50652 * 111.00195 * 340.76989 * 13 2 1 15 15 C 1.55839 * 101.03114 * 189.76210 * 14 13 2 16 16 C 1.54840 * 103.52010 * 32.99642 * 15 14 13 17 17 C 1.50656 * 110.99868 * 232.68351 * 13 2 1 18 18 C 1.52999 * 115.87707 * 296.64771 * 17 13 2 19 19 C 1.50697 * 109.47278 * 186.57545 * 18 17 13 20 20 O 1.20828 * 120.00065 * 359.97438 * 19 18 17 21 21 O 1.34232 * 120.00306 * 180.02562 * 19 18 17 22 22 C 1.57328 * 100.35337 * 61.75878 * 17 13 2 23 23 C 1.54841 * 103.38527 * 33.58463 * 22 17 13 24 24 H 1.08998 * 109.46635 * 263.45472 * 1 2 3 25 25 H 1.09001 * 109.46789 * 23.45427 * 1 2 3 26 26 H 1.09005 * 109.46920 * 143.45346 * 1 2 3 27 27 H 1.08999 * 109.46936 * 292.92574 * 4 2 1 28 28 H 1.08997 * 109.46991 * 52.91880 * 4 2 1 29 29 H 0.96997 * 119.99618 * 179.97438 * 8 7 5 30 30 H 1.09005 * 115.87384 * 64.06597 * 14 13 2 31 31 H 1.09000 * 110.61267 * 151.49920 * 15 14 13 32 32 H 1.09000 * 110.61604 * 274.48718 * 15 14 13 33 33 H 1.09003 * 110.61188 * 241.49173 * 16 15 14 34 34 H 1.08999 * 110.61672 * 118.50576 * 16 15 14 35 35 H 1.09008 * 109.47050 * 306.57234 * 18 17 13 36 36 H 1.09001 * 109.47147 * 66.57294 * 18 17 13 37 37 H 0.96704 * 116.99727 * 180.02562 * 21 19 18 38 38 H 1.09000 * 111.02032 * 274.95953 * 22 17 13 39 39 H 1.08992 * 110.33820 * 151.88509 * 22 17 13 40 40 H 1.09000 * 110.61594 * 241.09396 * 23 22 17 41 41 H 1.08998 * 110.74638 * 118.17351 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5368 -0.5715 -1.3399 6 1 4.0601 0.0587 -0.6359 7 6 4.2383 -1.2391 -2.3214 8 7 3.6011 -2.0061 -3.1788 9 14 6.0937 -1.0539 -2.4333 10 1 6.5659 -0.1426 -1.3602 11 1 6.7346 -2.3836 -2.2704 12 1 6.4558 -0.4889 -3.7581 13 7 2.0197 -0.6925 1.1994 14 6 0.9477 -0.7672 2.2553 15 6 1.7661 -1.2881 3.4748 16 6 3.1641 -0.6550 3.2696 17 6 3.0035 0.1639 1.9534 18 6 4.2965 0.5070 1.2108 19 6 5.2370 1.2240 2.1447 20 8 4.9069 1.4390 3.2870 21 8 6.4412 1.6248 1.7073 22 6 2.0879 1.3892 2.3214 23 6 0.6953 0.7458 2.5315 24 1 -0.3632 -0.1171 1.0210 25 1 -0.3633 0.9428 -0.4090 26 1 -0.3633 -0.8256 -0.6120 27 1 1.7838 -1.7790 -1.1881 28 1 1.5770 -0.2859 -2.1347 29 1 4.0945 -2.4754 -3.8695 30 1 0.0649 -1.3520 1.9964 31 1 1.3227 -0.9445 4.4095 32 1 1.8311 -2.3760 3.4569 33 1 3.9221 -1.4292 3.1499 34 1 3.4138 0.0023 4.1025 35 1 4.7661 -0.4105 0.8559 36 1 4.0677 1.1502 0.3611 37 1 7.0098 2.0804 2.3431 38 1 2.0573 2.1129 1.5069 39 1 2.4360 1.8595 3.2410 40 1 -0.0256 1.1505 1.8211 41 1 0.3505 0.8969 3.5544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714127156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:30 Heat of formation + Delta-G solvation = -38.658787 kcal Electronic energy + Delta-G solvation = -22530.984281 eV Core-core repulsion = 19412.604230 eV Total energy + Delta-G solvation = -3118.380050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09169 -39.62411 -35.90564 -34.35668 -32.68375 -31.66943 -30.05389 -28.25035 -27.38863 -26.68677 -23.26817 -21.88140 -21.66452 -20.73793 -18.80513 -18.02658 -17.79382 -16.70586 -15.85286 -15.68531 -15.41623 -15.20657 -14.59958 -14.21819 -13.36814 -13.00442 -12.55203 -12.46691 -12.32564 -12.21286 -11.87086 -11.66847 -11.53853 -11.25614 -11.16285 -10.91545 -10.82674 -10.74305 -10.56395 -10.48036 -10.32815 -10.16044 -9.95300 -9.81224 -9.56715 -9.14407 -8.62077 -8.25941 -7.67864 -5.89390 -3.88522 2.50495 3.27938 3.35739 3.44630 3.47420 4.43106 4.53244 4.86144 4.90628 5.13808 5.36627 5.37665 5.48943 5.57065 5.62075 5.68659 5.69488 5.75677 5.80262 5.98442 6.06234 6.09611 6.15344 6.21355 6.21486 6.28625 6.38281 6.48808 6.56719 6.63134 6.65920 6.77567 6.79308 7.12150 7.33876 7.58774 7.80503 8.10770 8.14593 8.17869 8.55061 9.15259 9.73247 11.22702 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.009850 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.436460 B = 2841.943780 C = 4100.359012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.066 3.934 3 H 0.046 0.954 4 C 0.037 3.963 5 C -0.523 4.523 6 H 0.078 0.922 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.458 5.458 14 C 0.040 3.960 15 C -0.113 4.113 16 C -0.103 4.103 17 C 0.094 3.906 18 C -0.086 4.086 19 C 0.479 3.521 20 O -0.521 6.521 21 O -0.515 6.515 22 C -0.144 4.144 23 C -0.159 4.159 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.027 0.973 28 H 0.010 0.990 29 H 0.256 0.744 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.893 5.702 11.995 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 H 0.064 0.936 4 C 0.000 4.000 5 C -0.561 4.561 6 H 0.095 0.905 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.181 5.181 14 C -0.069 4.069 15 C -0.151 4.151 16 C -0.141 4.141 17 C 0.004 3.996 18 C -0.123 4.123 19 C 0.323 3.677 20 O -0.410 6.410 21 O -0.326 6.326 22 C -0.183 4.183 23 C -0.198 4.198 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.259 0.741 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.992 4.866 11.619 12.753 hybrid contribution 1.115 1.168 0.262 1.636 sum -0.877 6.034 11.881 13.354 Atomic orbital electron populations 1.22910 0.97509 1.01242 1.02649 1.22108 0.92243 0.96843 0.93026 0.93635 1.19129 0.95761 0.96063 0.89070 1.21932 0.92889 1.27525 1.13731 0.90493 1.24967 0.97587 0.95618 0.96087 1.69980 1.35137 1.30728 1.17847 0.86822 0.86931 0.77995 0.78156 1.19011 1.21250 1.21344 1.67851 1.07093 1.41336 1.01777 1.24417 0.95525 0.94453 0.92457 1.22576 0.95690 1.00380 0.96477 1.22571 0.96846 0.98507 0.96213 1.23400 0.91663 0.91740 0.92788 1.21502 0.91713 1.02866 0.96237 1.23950 0.80506 0.75525 0.87766 1.90636 1.75850 1.53850 1.20702 1.84647 1.28657 1.71044 1.48270 1.23512 0.94993 0.98272 1.01485 1.23643 0.97625 0.97115 1.01390 0.90456 0.93688 0.92639 0.95471 0.97173 0.93407 0.87092 0.92171 0.91457 0.91871 0.90583 0.85029 0.85625 0.74078 0.91928 0.91092 0.90430 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.12 7.93 37.16 0.29 -2.83 16 2 C 0.07 1.30 1.70 -67.71 -0.12 1.19 16 3 H 0.05 0.91 5.34 -51.93 -0.28 0.63 16 4 C 0.04 0.92 4.41 -27.88 -0.12 0.80 16 5 C -0.52 -13.69 8.29 -34.44 -0.29 -13.97 16 6 H 0.08 1.84 2.26 -52.48 -0.12 1.72 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.87 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 N -0.46 -8.51 5.22 -189.72 -0.99 -9.50 16 14 C 0.04 0.61 3.81 -62.56 -0.24 0.37 16 15 C -0.11 -1.61 6.45 -24.25 -0.16 -1.76 16 16 C -0.10 -1.64 5.17 -24.24 -0.13 -1.76 16 17 C 0.09 1.60 0.65 -125.61 -0.08 1.52 16 18 C -0.09 -1.54 3.60 -27.89 -0.10 -1.64 16 19 C 0.48 7.68 8.07 36.00 0.29 7.97 16 20 O -0.52 -8.74 13.89 -18.75 -0.26 -9.00 16 21 O -0.52 -7.22 13.42 -39.26 -0.53 -7.75 16 22 C -0.14 -2.22 4.94 -23.41 -0.12 -2.34 16 23 C -0.16 -2.21 5.39 -24.24 -0.13 -2.35 16 24 H 0.08 1.13 3.03 -51.93 -0.16 0.97 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.11 1.59 6.89 -51.93 -0.36 1.24 16 31 H 0.06 0.74 7.86 -51.93 -0.41 0.34 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.20 6.54 -51.93 -0.34 0.86 16 35 H 0.13 2.61 7.08 -51.92 -0.37 2.24 16 36 H 0.13 2.37 5.85 -51.93 -0.30 2.06 16 37 H 0.40 3.51 9.10 45.56 0.41 3.92 16 38 H 0.06 0.99 6.93 -51.93 -0.36 0.63 16 39 H 0.07 1.10 7.24 -51.93 -0.38 0.72 16 40 H 0.08 1.06 5.51 -51.93 -0.29 0.77 16 41 H 0.06 0.76 7.86 -51.93 -0.41 0.35 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -30.70 300.80 -7.51 -38.20 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.00 Total: 6.68 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.98 Total: -13.29 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.25 Total: -35.40 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.79 Total: -16.75 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.70 -7.51 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714127156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.454 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds