Wall clock time and date at job start Mon Mar 30 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47091 * 2 1 4 4 C 1.53002 * 109.47314 * 239.99816 * 2 1 3 5 5 C 1.50697 * 109.47449 * 172.92303 * 4 2 1 6 6 H 1.08008 * 119.99683 * 354.26085 * 5 4 2 7 7 C 1.37878 * 120.00145 * 174.25541 * 5 4 2 8 8 N 1.31511 * 119.99837 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99745 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47382 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47208 * 120.00622 * 9 7 5 12 12 H 1.48510 * 109.46902 * 240.00170 * 9 7 5 13 13 N 1.46899 * 109.47159 * 119.99967 * 2 1 3 14 14 C 1.50652 * 111.00195 * 340.76989 * 13 2 1 15 15 C 1.55839 * 101.03114 * 189.76210 * 14 13 2 16 16 C 1.54840 * 103.52010 * 32.99642 * 15 14 13 17 17 C 1.50656 * 110.99868 * 232.68351 * 13 2 1 18 18 C 1.52999 * 115.87707 * 296.64771 * 17 13 2 19 19 C 1.50697 * 109.47278 * 186.57545 * 18 17 13 20 20 O 1.20828 * 120.00065 * 359.97438 * 19 18 17 21 21 O 1.34232 * 120.00306 * 180.02562 * 19 18 17 22 22 C 1.57328 * 100.35337 * 61.75878 * 17 13 2 23 23 C 1.54841 * 103.38527 * 33.58463 * 22 17 13 24 24 H 1.08998 * 109.46635 * 263.45472 * 1 2 3 25 25 H 1.09001 * 109.46789 * 23.45427 * 1 2 3 26 26 H 1.09005 * 109.46920 * 143.45346 * 1 2 3 27 27 H 1.08999 * 109.46936 * 292.92574 * 4 2 1 28 28 H 1.08997 * 109.46991 * 52.91880 * 4 2 1 29 29 H 0.96997 * 119.99618 * 179.97438 * 8 7 5 30 30 H 1.09005 * 115.87384 * 64.06597 * 14 13 2 31 31 H 1.09000 * 110.61267 * 151.49920 * 15 14 13 32 32 H 1.09000 * 110.61604 * 274.48718 * 15 14 13 33 33 H 1.09003 * 110.61188 * 241.49173 * 16 15 14 34 34 H 1.08999 * 110.61672 * 118.50576 * 16 15 14 35 35 H 1.09008 * 109.47050 * 306.57234 * 18 17 13 36 36 H 1.09001 * 109.47147 * 66.57294 * 18 17 13 37 37 H 0.96704 * 116.99727 * 180.02562 * 21 19 18 38 38 H 1.09000 * 111.02032 * 274.95953 * 22 17 13 39 39 H 1.08992 * 110.33820 * 151.88509 * 22 17 13 40 40 H 1.09000 * 110.61594 * 241.09396 * 23 22 17 41 41 H 1.08998 * 110.74638 * 118.17351 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5368 -0.5715 -1.3399 6 1 4.0601 0.0587 -0.6359 7 6 4.2383 -1.2391 -2.3214 8 7 3.6011 -2.0061 -3.1788 9 14 6.0937 -1.0539 -2.4333 10 1 6.5659 -0.1426 -1.3602 11 1 6.7346 -2.3836 -2.2704 12 1 6.4558 -0.4889 -3.7581 13 7 2.0197 -0.6925 1.1994 14 6 0.9477 -0.7672 2.2553 15 6 1.7661 -1.2881 3.4748 16 6 3.1641 -0.6550 3.2696 17 6 3.0035 0.1639 1.9534 18 6 4.2965 0.5070 1.2108 19 6 5.2370 1.2240 2.1447 20 8 4.9069 1.4390 3.2870 21 8 6.4412 1.6248 1.7073 22 6 2.0879 1.3892 2.3214 23 6 0.6953 0.7458 2.5315 24 1 -0.3632 -0.1171 1.0210 25 1 -0.3633 0.9428 -0.4090 26 1 -0.3633 -0.8256 -0.6120 27 1 1.7838 -1.7790 -1.1881 28 1 1.5770 -0.2859 -2.1347 29 1 4.0945 -2.4754 -3.8695 30 1 0.0649 -1.3520 1.9964 31 1 1.3227 -0.9445 4.4095 32 1 1.8311 -2.3760 3.4569 33 1 3.9221 -1.4292 3.1499 34 1 3.4138 0.0023 4.1025 35 1 4.7661 -0.4105 0.8559 36 1 4.0677 1.1502 0.3611 37 1 7.0098 2.0804 2.3431 38 1 2.0573 2.1129 1.5069 39 1 2.4360 1.8595 3.2410 40 1 -0.0256 1.1505 1.8211 41 1 0.3505 0.8969 3.5544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714127156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:29 Heat of formation + Delta-G solvation = -59.776129 kcal Electronic energy + Delta-G solvation = -22531.899998 eV Core-core repulsion = 19412.604230 eV Total energy + Delta-G solvation = -3119.295767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.38792 -40.86509 -37.10940 -36.04843 -34.36426 -33.23948 -31.30736 -29.75237 -28.93833 -28.15748 -25.05176 -23.14085 -23.00566 -22.18529 -20.07514 -19.45878 -19.09995 -18.43518 -17.19331 -17.08703 -16.81150 -16.61759 -16.15140 -15.78154 -14.81613 -14.36827 -14.14174 -13.84143 -13.77725 -13.69762 -13.36377 -13.17467 -13.04452 -12.82244 -12.66695 -12.44265 -12.24508 -12.19455 -12.02388 -11.80558 -11.69808 -11.64463 -11.50758 -11.19700 -10.86506 -10.74936 -10.54748 -10.42758 -9.10246 -8.03886 -6.08045 1.23103 1.42071 1.45244 1.55798 2.09232 2.49735 3.14729 3.32157 3.62859 3.64237 3.86916 4.14322 4.16025 4.29823 4.34022 4.40518 4.47347 4.53721 4.55009 4.65730 4.69801 4.77192 4.87232 4.97702 5.03031 5.09003 5.15062 5.16428 5.29183 5.35581 5.43444 5.45878 5.48197 5.62800 5.66027 5.72801 5.94938 6.12766 6.41292 6.55810 7.06401 7.07132 7.58124 9.09454 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.009850 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.436460 B = 2841.943780 C = 4100.359012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.078 3.922 3 H 0.045 0.955 4 C 0.042 3.958 5 C -0.523 4.523 6 H 0.101 0.899 7 C -0.003 4.003 8 N -0.942 5.942 9 Si 0.935 3.065 10 H -0.245 1.245 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.489 5.489 14 C 0.037 3.963 15 C -0.107 4.107 16 C -0.100 4.100 17 C 0.087 3.913 18 C -0.089 4.089 19 C 0.491 3.509 20 O -0.527 6.527 21 O -0.516 6.516 22 C -0.138 4.138 23 C -0.151 4.151 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.038 0.962 27 H -0.012 1.012 28 H -0.019 1.019 29 H 0.254 0.746 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.426 0.574 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 7.092 14.442 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.030 4.030 3 H 0.063 0.937 4 C 0.004 3.996 5 C -0.561 4.561 6 H 0.118 0.882 7 C -0.198 4.198 8 N -0.585 5.585 9 Si 0.761 3.239 10 H -0.168 1.168 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.213 5.213 14 C -0.071 4.071 15 C -0.145 4.145 16 C -0.138 4.138 17 C -0.003 4.003 18 C -0.126 4.126 19 C 0.334 3.666 20 O -0.416 6.416 21 O -0.330 6.330 22 C -0.177 4.177 23 C -0.189 4.189 24 H 0.124 0.876 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.007 0.993 28 H 0.000 1.000 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.288 0.712 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.871 6.284 14.098 15.548 hybrid contribution 1.117 0.735 -0.486 1.423 sum -0.754 7.018 13.613 15.334 Atomic orbital electron populations 1.22877 0.95228 1.01356 1.04276 1.21757 0.94047 0.95701 0.91525 0.93742 1.19011 0.95499 0.94092 0.90965 1.22538 0.93809 1.26526 1.13204 0.88207 1.25822 1.02159 0.95737 0.96125 1.70140 1.36914 1.32456 1.18972 0.85826 0.81610 0.77985 0.78463 1.16843 1.21613 1.21454 1.67688 1.09018 1.42028 1.02533 1.24559 0.95129 0.95818 0.91545 1.22581 0.94463 1.00267 0.97166 1.22530 0.97647 0.98088 0.95506 1.23467 0.91183 0.92723 0.92890 1.21287 0.92917 1.01725 0.96696 1.23352 0.80856 0.75352 0.87079 1.90631 1.76204 1.54146 1.20665 1.84573 1.28123 1.71054 1.49253 1.23448 0.95535 0.97386 1.01300 1.23595 0.96693 0.95534 1.03116 0.87591 0.92366 0.94233 0.99314 1.00049 0.93735 0.86155 0.89396 0.91606 0.93192 0.90133 0.87470 0.87072 0.71192 0.92594 0.90669 0.89857 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.86 7.93 71.98 0.57 -5.29 16 2 C 0.08 3.09 1.70 44.92 0.08 3.16 16 3 H 0.04 1.76 5.34 -2.39 -0.01 1.74 16 4 C 0.04 2.17 4.41 29.85 0.13 2.30 16 5 C -0.52 -28.07 8.29 25.60 0.21 -27.86 16 6 H 0.10 4.82 2.26 -2.91 -0.01 4.82 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 9 Si 0.94 43.94 29.54 68.60 2.03 45.96 16 10 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 N -0.49 -17.81 5.22 -754.16 -3.94 -21.75 16 14 C 0.04 1.04 3.81 46.14 0.18 1.21 16 15 C -0.11 -2.72 6.45 32.20 0.21 -2.51 16 16 C -0.10 -2.95 5.17 32.21 0.17 -2.79 16 17 C 0.09 2.85 0.65 5.30 0.00 2.85 16 18 C -0.09 -3.12 3.60 29.85 0.11 -3.01 16 19 C 0.49 14.82 8.07 71.23 0.57 15.39 16 20 O -0.53 -16.39 13.89 21.96 0.31 -16.09 16 21 O -0.52 -13.17 13.42 -51.44 -0.69 -13.86 16 22 C -0.14 -3.90 4.94 32.75 0.16 -3.74 16 23 C -0.15 -3.64 5.39 32.21 0.17 -3.47 16 24 H 0.11 2.81 3.03 -2.39 -0.01 2.81 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.39 7.75 -2.38 -0.02 1.37 16 27 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 28 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 29 H 0.25 14.98 8.31 -92.71 -0.77 14.20 16 30 H 0.12 3.11 6.89 -2.38 -0.02 3.09 16 31 H 0.09 1.78 7.86 -2.39 -0.02 1.76 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 2.31 6.54 -2.39 -0.02 2.30 16 35 H 0.11 4.26 7.08 -2.38 -0.02 4.25 16 36 H 0.11 4.15 5.85 -2.39 -0.01 4.14 16 37 H 0.43 6.12 9.10 -74.05 -0.67 5.45 16 38 H 0.06 1.65 6.93 -2.39 -0.02 1.63 16 39 H 0.07 2.08 7.24 -2.39 -0.02 2.06 16 40 H 0.08 1.94 5.51 -2.39 -0.01 1.93 16 41 H 0.09 1.71 7.86 -2.39 -0.02 1.69 16 Total: -1.00 -67.74 300.80 1.40 -66.34 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.39 Total: 20.74 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 3.02 Total: -23.42 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.65 Total: -79.66 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.39 Total: -29.95 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -67.74 1.40 -66.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714127156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.562 kcal (2) G-P(sol) polarization free energy of solvation -67.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds