Wall clock time and date at job start Mon Mar 30 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.46905 * 2 1 4 4 C 1.53002 * 109.47453 * 119.99537 * 2 1 3 5 5 C 1.50694 * 109.47589 * 187.66938 * 4 2 1 6 6 H 1.08001 * 120.00025 * 5.83661 * 5 4 2 7 7 C 1.37871 * 120.00213 * 185.84383 * 5 4 2 8 8 N 1.31513 * 119.99975 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00112 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47617 * 89.99622 * 9 7 5 11 11 H 1.48502 * 109.47067 * 209.99795 * 9 7 5 12 12 H 1.48498 * 109.46926 * 329.99417 * 9 7 5 13 13 N 1.46898 * 109.47388 * 239.99638 * 2 1 3 14 14 C 1.50651 * 110.99939 * 153.24205 * 13 2 1 15 15 C 1.55848 * 101.03130 * 297.65397 * 14 13 2 16 16 C 1.54833 * 103.51688 * 327.01001 * 15 14 13 17 17 C 1.50659 * 110.99729 * 45.15668 * 13 2 1 18 18 C 1.52998 * 116.47682 * 296.29207 * 17 13 2 19 19 C 1.50701 * 109.46895 * 192.96385 * 18 17 13 20 20 O 1.20820 * 120.00239 * 359.97438 * 19 18 17 21 21 O 1.34232 * 119.99695 * 179.97438 * 19 18 17 22 22 C 1.55845 * 101.02828 * 170.23671 * 17 13 2 23 23 C 1.54839 * 103.51988 * 327.00772 * 22 17 13 24 24 H 1.09001 * 109.47133 * 151.32074 * 1 2 3 25 25 H 1.09004 * 109.47392 * 271.31813 * 1 2 3 26 26 H 1.09000 * 109.47389 * 31.32556 * 1 2 3 27 27 H 1.09000 * 109.47126 * 307.67660 * 4 2 1 28 28 H 1.09003 * 109.46463 * 67.66908 * 4 2 1 29 29 H 0.97000 * 120.00224 * 180.02562 * 8 7 5 30 30 H 1.09003 * 115.88028 * 64.07147 * 14 13 2 31 31 H 1.08997 * 110.61799 * 208.49732 * 15 14 13 32 32 H 1.09003 * 110.61206 * 85.51510 * 15 14 13 33 33 H 1.09006 * 110.60671 * 241.48747 * 16 15 14 34 34 H 1.09002 * 110.61734 * 118.50911 * 16 15 14 35 35 H 1.09001 * 109.47288 * 312.95884 * 18 17 13 36 36 H 1.09003 * 109.47588 * 72.96018 * 18 17 13 37 37 H 0.96701 * 116.99536 * 179.97438 * 21 19 18 38 38 H 1.09004 * 110.61200 * 85.50880 * 22 17 13 39 39 H 1.08997 * 110.61125 * 208.49404 * 22 17 13 40 40 H 1.08998 * 110.61339 * 118.51101 * 23 22 17 41 41 H 1.09003 * 110.60603 * 241.33323 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5350 -0.5591 1.3478 6 1 4.0561 0.0791 0.6495 7 6 4.2375 -1.2255 2.3292 8 7 3.6029 -2.0024 3.1797 9 14 6.0906 -1.0241 2.4517 10 1 6.4064 0.1169 3.3482 11 1 6.6882 -2.2668 3.0028 12 1 6.6503 -0.7623 1.1014 13 7 2.0197 -0.6926 -1.1994 14 6 3.3836 -0.1894 -1.5942 15 6 3.0717 1.3058 -1.9040 16 6 1.6307 1.2654 -2.4689 17 6 1.2645 -0.2488 -2.4252 18 6 -0.2315 -0.5678 -2.4575 19 6 -0.7610 -0.3526 -3.8519 20 8 -0.0182 0.0184 -4.7296 21 8 -2.0579 -0.5731 -4.1188 22 6 2.1168 -0.9036 -3.5537 23 6 3.5579 -0.8632 -2.9886 24 1 -0.3633 -0.9016 -0.4932 25 1 -0.3634 0.0236 1.0274 26 1 -0.3634 0.8778 -0.5343 27 1 1.5690 -0.2927 2.1339 28 1 1.7930 -1.7808 1.1834 29 1 4.0971 -2.4710 3.8704 30 1 4.1847 -0.3747 -0.8786 31 1 3.7651 1.6962 -2.6489 32 1 3.1100 1.9026 -0.9927 33 1 1.6099 1.6357 -3.4940 34 1 0.9546 1.8421 -1.8377 35 1 -0.3879 -1.6064 -2.1658 36 1 -0.7579 0.0876 -1.7637 37 1 -2.3510 -0.4211 -5.0276 38 1 1.8007 -1.9325 -3.7253 39 1 2.0485 -0.3217 -4.4728 40 1 3.9560 -1.8721 -2.8803 41 1 4.2045 -0.2636 -3.6293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714127157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:32 Heat of formation + Delta-G solvation = -48.057385 kcal Electronic energy + Delta-G solvation = -22240.983790 eV Core-core repulsion = 19122.196185 eV Total energy + Delta-G solvation = -3118.787604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.14159 -39.71915 -36.13569 -34.48305 -32.86111 -31.76676 -29.97144 -28.16241 -27.22990 -26.92173 -23.44228 -21.88469 -21.70465 -20.27285 -19.14107 -18.38737 -17.80459 -16.66960 -15.99821 -15.83232 -15.57095 -15.02718 -14.68403 -14.24144 -13.39756 -13.10892 -12.87957 -12.70398 -12.34595 -12.04882 -11.73879 -11.70213 -11.47085 -11.38527 -11.29712 -11.14377 -10.89569 -10.71583 -10.62719 -10.48069 -10.36153 -10.27176 -9.93337 -9.80249 -9.47540 -9.06613 -8.85070 -8.29931 -7.72142 -5.93972 -3.93834 2.26049 3.01733 3.33701 3.40931 3.42150 4.44215 4.49407 4.76825 4.85074 5.22317 5.33415 5.40665 5.42683 5.44728 5.60505 5.60755 5.68275 5.81622 5.85421 5.89135 5.90796 6.09171 6.13613 6.17619 6.27340 6.30037 6.41237 6.46598 6.57431 6.60347 6.67512 6.81325 6.93667 7.03454 7.42960 7.57817 7.76262 7.92892 8.05411 8.14504 8.49048 9.10333 9.67659 11.17629 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.006081 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.799788 B = 4603.676951 C = 5099.574524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.062 3.938 3 H 0.044 0.956 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.460 5.460 14 C 0.054 3.946 15 C -0.152 4.152 16 C -0.140 4.140 17 C 0.073 3.927 18 C -0.102 4.102 19 C 0.476 3.524 20 O -0.511 6.511 21 O -0.521 6.521 22 C -0.100 4.100 23 C -0.121 4.121 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.013 0.987 28 H 0.029 0.971 29 H 0.258 0.742 30 H 0.139 0.861 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.405 0.595 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 4.158 -13.082 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.046 4.046 3 H 0.062 0.938 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.183 5.183 14 C -0.054 4.054 15 C -0.191 4.191 16 C -0.179 4.179 17 C -0.017 4.017 18 C -0.139 4.139 19 C 0.318 3.682 20 O -0.399 6.399 21 O -0.333 6.333 22 C -0.138 4.138 23 C -0.159 4.159 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.150 0.850 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.499 3.432 -12.591 15.051 hybrid contribution 0.881 1.106 -0.540 1.513 sum -6.618 4.538 -13.131 15.389 Atomic orbital electron populations 1.22731 0.97573 1.00246 1.01922 1.22104 0.92381 0.97123 0.92977 0.93840 1.19112 0.95530 0.96392 0.89199 1.21330 0.92828 1.27057 1.13717 0.92204 1.24969 0.97834 0.95463 0.96006 1.69956 1.35406 1.30156 1.17953 0.86733 0.86435 0.77409 0.78240 1.20927 1.21357 1.19884 1.67817 1.01180 1.49820 0.99462 1.24769 0.94286 0.90592 0.95718 1.23247 0.95935 0.99479 1.00397 1.23217 0.96922 0.96874 1.00869 1.23253 0.90666 0.93622 0.94202 1.21921 0.95475 1.06461 0.90081 1.23849 0.79216 0.72904 0.92183 1.90674 1.57699 1.42815 1.48717 1.84568 1.28713 1.82105 1.37910 1.22606 0.94360 0.99969 0.96863 1.22687 0.96375 1.00852 0.95968 0.91106 0.92264 0.93787 0.96896 0.95219 0.93189 0.84334 0.91954 0.91227 0.91464 0.92281 0.86607 0.85013 0.73706 0.92499 0.90374 0.91501 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 7.34 37.15 0.27 -2.43 16 2 C 0.06 1.23 1.67 -67.72 -0.11 1.12 16 3 H 0.04 0.88 5.23 -51.92 -0.27 0.61 16 4 C 0.03 0.87 4.56 -27.88 -0.13 0.74 16 5 C -0.51 -13.68 7.94 -34.45 -0.27 -13.96 16 6 H 0.06 1.53 5.13 -52.49 -0.27 1.26 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 9 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.46 -8.62 5.31 -190.63 -1.01 -9.63 16 14 C 0.05 1.00 4.02 -62.56 -0.25 0.75 16 15 C -0.15 -2.48 5.62 -24.24 -0.14 -2.61 16 16 C -0.14 -2.13 4.95 -24.25 -0.12 -2.25 16 17 C 0.07 1.12 0.63 -126.45 -0.08 1.04 16 18 C -0.10 -1.34 3.82 -27.88 -0.11 -1.45 16 19 C 0.48 5.91 8.09 36.01 0.29 6.20 16 20 O -0.51 -7.47 13.80 -18.75 -0.26 -7.73 16 21 O -0.52 -5.02 13.42 -39.26 -0.53 -5.55 16 22 C -0.10 -1.56 4.83 -24.24 -0.12 -1.67 16 23 C -0.12 -1.94 6.43 -24.24 -0.16 -2.10 16 24 H 0.07 1.06 5.09 -51.93 -0.26 0.80 16 25 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 26 H 0.04 0.61 5.47 -51.93 -0.28 0.32 16 27 H 0.01 0.34 7.93 -51.93 -0.41 -0.07 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 30 H 0.14 2.93 5.33 -51.93 -0.28 2.65 16 31 H 0.06 0.92 7.82 -51.93 -0.41 0.52 16 32 H 0.07 1.20 6.89 -51.93 -0.36 0.84 16 33 H 0.07 1.01 7.44 -51.93 -0.39 0.63 16 34 H 0.06 0.88 6.64 -51.93 -0.34 0.53 16 35 H 0.12 1.48 7.48 -51.93 -0.39 1.10 16 36 H 0.13 1.61 4.29 -51.93 -0.22 1.38 16 37 H 0.40 2.14 9.10 45.56 0.41 2.56 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.22 6.21 -51.93 -0.32 0.90 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.85 7.83 -51.93 -0.41 0.45 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -30.86 300.36 -7.57 -38.44 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.00 Total: 4.58 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.01 Total: -15.09 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.28 Total: -35.44 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.79 Total: -13.28 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.86 -7.57 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714127157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.622 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds