Wall clock time and date at job start Mon Mar 30 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.46905 * 2 1 4 4 C 1.53002 * 109.47453 * 119.99537 * 2 1 3 5 5 C 1.50694 * 109.47589 * 187.66938 * 4 2 1 6 6 H 1.08001 * 120.00025 * 5.83661 * 5 4 2 7 7 C 1.37871 * 120.00213 * 185.84383 * 5 4 2 8 8 N 1.31513 * 119.99975 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00112 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47617 * 89.99622 * 9 7 5 11 11 H 1.48502 * 109.47067 * 209.99795 * 9 7 5 12 12 H 1.48498 * 109.46926 * 329.99417 * 9 7 5 13 13 N 1.46898 * 109.47388 * 239.99638 * 2 1 3 14 14 C 1.50651 * 110.99939 * 153.24205 * 13 2 1 15 15 C 1.55848 * 101.03130 * 297.65397 * 14 13 2 16 16 C 1.54833 * 103.51688 * 327.01001 * 15 14 13 17 17 C 1.50659 * 110.99729 * 45.15668 * 13 2 1 18 18 C 1.52998 * 116.47682 * 296.29207 * 17 13 2 19 19 C 1.50701 * 109.46895 * 192.96385 * 18 17 13 20 20 O 1.20820 * 120.00239 * 359.97438 * 19 18 17 21 21 O 1.34232 * 119.99695 * 179.97438 * 19 18 17 22 22 C 1.55845 * 101.02828 * 170.23671 * 17 13 2 23 23 C 1.54839 * 103.51988 * 327.00772 * 22 17 13 24 24 H 1.09001 * 109.47133 * 151.32074 * 1 2 3 25 25 H 1.09004 * 109.47392 * 271.31813 * 1 2 3 26 26 H 1.09000 * 109.47389 * 31.32556 * 1 2 3 27 27 H 1.09000 * 109.47126 * 307.67660 * 4 2 1 28 28 H 1.09003 * 109.46463 * 67.66908 * 4 2 1 29 29 H 0.97000 * 120.00224 * 180.02562 * 8 7 5 30 30 H 1.09003 * 115.88028 * 64.07147 * 14 13 2 31 31 H 1.08997 * 110.61799 * 208.49732 * 15 14 13 32 32 H 1.09003 * 110.61206 * 85.51510 * 15 14 13 33 33 H 1.09006 * 110.60671 * 241.48747 * 16 15 14 34 34 H 1.09002 * 110.61734 * 118.50911 * 16 15 14 35 35 H 1.09001 * 109.47288 * 312.95884 * 18 17 13 36 36 H 1.09003 * 109.47588 * 72.96018 * 18 17 13 37 37 H 0.96701 * 116.99536 * 179.97438 * 21 19 18 38 38 H 1.09004 * 110.61200 * 85.50880 * 22 17 13 39 39 H 1.08997 * 110.61125 * 208.49404 * 22 17 13 40 40 H 1.08998 * 110.61339 * 118.51101 * 23 22 17 41 41 H 1.09003 * 110.60603 * 241.33323 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5350 -0.5591 1.3478 6 1 4.0561 0.0791 0.6495 7 6 4.2375 -1.2255 2.3292 8 7 3.6029 -2.0024 3.1797 9 14 6.0906 -1.0241 2.4517 10 1 6.4064 0.1169 3.3482 11 1 6.6882 -2.2668 3.0028 12 1 6.6503 -0.7623 1.1014 13 7 2.0197 -0.6926 -1.1994 14 6 3.3836 -0.1894 -1.5942 15 6 3.0717 1.3058 -1.9040 16 6 1.6307 1.2654 -2.4689 17 6 1.2645 -0.2488 -2.4252 18 6 -0.2315 -0.5678 -2.4575 19 6 -0.7610 -0.3526 -3.8519 20 8 -0.0182 0.0184 -4.7296 21 8 -2.0579 -0.5731 -4.1188 22 6 2.1168 -0.9036 -3.5537 23 6 3.5579 -0.8632 -2.9886 24 1 -0.3633 -0.9016 -0.4932 25 1 -0.3634 0.0236 1.0274 26 1 -0.3634 0.8778 -0.5343 27 1 1.5690 -0.2927 2.1339 28 1 1.7930 -1.7808 1.1834 29 1 4.0971 -2.4710 3.8704 30 1 4.1847 -0.3747 -0.8786 31 1 3.7651 1.6962 -2.6489 32 1 3.1100 1.9026 -0.9927 33 1 1.6099 1.6357 -3.4940 34 1 0.9546 1.8421 -1.8377 35 1 -0.3879 -1.6064 -2.1658 36 1 -0.7579 0.0876 -1.7637 37 1 -2.3510 -0.4211 -5.0276 38 1 1.8007 -1.9325 -3.7253 39 1 2.0485 -0.3217 -4.4728 40 1 3.9560 -1.8721 -2.8803 41 1 4.2045 -0.2636 -3.6293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714127157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:32 Heat of formation + Delta-G solvation = -69.354171 kcal Electronic energy + Delta-G solvation = -22241.907287 eV Core-core repulsion = 19122.196185 eV Total energy + Delta-G solvation = -3119.711102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.38915 -40.73634 -37.03057 -36.13120 -34.52235 -33.27679 -31.27452 -29.73353 -28.87664 -28.15208 -25.23267 -23.07268 -22.98795 -21.68080 -20.58303 -19.61270 -18.82325 -18.43679 -17.17979 -17.02593 -16.90887 -16.49419 -16.24355 -15.73562 -14.64391 -14.44581 -14.25503 -14.05206 -13.90627 -13.43965 -13.26295 -13.14708 -13.01201 -12.86924 -12.59914 -12.55880 -12.33334 -12.28030 -11.97686 -11.90716 -11.87548 -11.59793 -11.44662 -11.20105 -10.89414 -10.76613 -10.56296 -10.46288 -9.18539 -8.09622 -6.15153 1.32769 1.40908 1.41792 1.51300 2.12986 2.45610 3.12773 3.26355 3.60389 3.64433 3.94721 4.14341 4.17398 4.29606 4.31434 4.39236 4.47861 4.54369 4.59768 4.62354 4.68018 4.76755 4.90018 4.94369 4.96706 5.05301 5.14326 5.18170 5.28271 5.29356 5.42409 5.46977 5.51942 5.58615 5.70179 5.75229 5.92440 6.09081 6.38091 6.51354 6.99271 7.12690 7.50481 9.02693 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.006081 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.799788 B = 4603.676951 C = 5099.574524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.039 0.961 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.070 0.930 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.482 5.482 14 C 0.041 3.959 15 C -0.146 4.146 16 C -0.133 4.133 17 C 0.078 3.922 18 C -0.105 4.105 19 C 0.487 3.513 20 O -0.535 6.535 21 O -0.513 6.513 22 C -0.094 4.094 23 C -0.116 4.116 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.075 0.925 27 H -0.012 1.012 28 H -0.006 1.006 29 H 0.258 0.742 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.145 0.855 37 H 0.426 0.574 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 5.229 -15.132 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.036 4.036 3 H 0.057 0.943 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.088 0.912 7 C -0.197 4.197 8 N -0.578 5.578 9 Si 0.774 3.226 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.205 5.205 14 C -0.067 4.067 15 C -0.185 4.185 16 C -0.171 4.171 17 C -0.012 4.012 18 C -0.142 4.142 19 C 0.330 3.670 20 O -0.425 6.425 21 O -0.327 6.327 22 C -0.132 4.132 23 C -0.154 4.154 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.006 0.994 28 H 0.013 0.987 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.162 0.838 37 H 0.288 0.712 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.109 4.514 -14.669 17.359 hybrid contribution 1.011 0.744 0.070 1.257 sum -7.098 5.258 -14.599 17.064 Atomic orbital electron populations 1.22719 0.94695 1.02356 1.02239 1.21817 0.94715 0.95779 0.91277 0.94278 1.18986 0.94908 0.94626 0.91212 1.21775 0.93980 1.26274 1.13206 0.91230 1.25823 1.02547 0.95431 0.95900 1.70102 1.37206 1.31610 1.18919 0.85692 0.80926 0.77229 0.78705 1.20283 1.21521 1.18571 1.67694 1.02021 1.50414 1.00397 1.24617 0.93370 0.92614 0.96136 1.23182 0.97307 0.97628 1.00354 1.23166 0.96052 0.96616 1.01314 1.23312 0.91940 0.93769 0.92152 1.21873 0.93880 1.07008 0.91397 1.23468 0.79800 0.72334 0.91370 1.90673 1.58511 1.44086 1.49229 1.84504 1.26987 1.81409 1.39824 1.22560 0.93697 0.99979 0.96916 1.22657 0.97364 1.00460 0.94890 0.89874 0.93037 0.90664 0.99400 0.98737 0.93350 0.87739 0.90309 0.92558 0.90631 0.91612 0.86274 0.83815 0.71205 0.92692 0.89826 0.92376 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 7.34 71.98 0.53 -4.49 16 2 C 0.07 2.86 1.67 44.91 0.07 2.94 16 3 H 0.04 1.57 5.23 -2.38 -0.01 1.56 16 4 C 0.04 2.07 4.56 29.85 0.14 2.21 16 5 C -0.51 -28.25 7.94 25.60 0.20 -28.05 16 6 H 0.07 3.63 5.13 -2.91 -0.01 3.61 16 7 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 8 N -0.94 -57.42 13.29 21.44 0.28 -57.13 16 9 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 13 N -0.48 -17.82 5.31 -757.02 -4.02 -21.84 16 14 C 0.04 1.49 4.02 46.15 0.19 1.67 16 15 C -0.15 -4.53 5.62 32.21 0.18 -4.35 16 16 C -0.13 -3.69 4.95 32.20 0.16 -3.53 16 17 C 0.08 2.25 0.63 4.75 0.00 2.25 16 18 C -0.10 -2.45 3.82 29.85 0.11 -2.33 16 19 C 0.49 10.50 8.09 71.24 0.58 11.07 16 20 O -0.53 -13.98 13.80 21.98 0.30 -13.68 16 21 O -0.51 -8.01 13.42 -51.44 -0.69 -8.70 16 22 C -0.09 -2.72 4.83 32.21 0.16 -2.56 16 23 C -0.12 -3.57 6.43 32.21 0.21 -3.37 16 24 H 0.08 2.34 5.09 -2.39 -0.01 2.33 16 25 H 0.05 1.65 7.72 -2.38 -0.02 1.63 16 26 H 0.07 1.84 5.47 -2.39 -0.01 1.83 16 27 H -0.01 -0.68 7.93 -2.39 -0.02 -0.70 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 30 H 0.10 4.50 5.33 -2.39 -0.01 4.49 16 31 H 0.08 2.15 7.82 -2.39 -0.02 2.14 16 32 H 0.06 1.88 6.89 -2.39 -0.02 1.86 16 33 H 0.08 2.02 7.44 -2.38 -0.02 2.00 16 34 H 0.07 1.74 6.64 -2.39 -0.02 1.73 16 35 H 0.12 2.75 7.48 -2.39 -0.02 2.74 16 36 H 0.14 3.00 4.29 -2.39 -0.01 2.99 16 37 H 0.43 2.90 9.10 -74.06 -0.67 2.23 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 39 H 0.08 2.38 6.21 -2.39 -0.01 2.37 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 41 H 0.08 2.08 7.83 -2.39 -0.02 2.06 16 Total: -1.00 -67.72 300.36 1.27 -66.45 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.38 Total: 16.50 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 2.99 Total: -28.10 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -3.74 Total: -78.98 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.39 Total: -22.38 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.72 1.27 -66.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714127157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.903 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds