Wall clock time and date at job start Mon Mar 30 2020 07:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00280 * 2 1 4 4 H 1.48504 * 109.47330 * 239.99351 * 3 2 1 5 5 H 1.48494 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47270 * 119.99505 * 3 2 1 7 7 C 1.37881 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.42892 * 114.00026 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46715 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47151 * 65.00174 * 12 11 10 14 14 C 1.46906 * 110.99831 * 180.02562 * 13 12 11 15 15 H 1.08989 * 110.24286 * 32.99396 * 14 13 12 16 16 C 1.54913 * 110.27012 * 270.89614 * 14 13 12 17 17 C 1.55316 * 106.38128 * 244.49380 * 16 14 13 18 18 C 1.53270 * 102.93430 * 23.95405 * 17 16 14 19 19 H 1.08999 * 110.40770 * 75.68360 * 18 17 16 20 20 C 1.51788 * 115.78995 * 202.85096 * 18 17 16 21 21 C 1.53733 * 107.25126 * 177.05372 * 20 18 17 22 22 C 1.52573 * 111.49439 * 302.17932 * 21 20 18 23 23 C 1.53766 * 111.46022 * 54.78077 * 22 21 20 24 24 C 1.51614 * 107.26786 * 302.52593 * 23 22 21 25 25 H 1.09002 * 109.76150 * 305.21607 * 24 23 22 26 26 H 0.97009 * 119.99733 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47379 * 59.99732 * 9 7 2 28 28 H 1.08996 * 109.47292 * 299.99863 * 9 7 2 29 29 H 1.08997 * 109.47527 * 60.00569 * 11 10 9 30 30 H 1.09003 * 109.47523 * 299.99562 * 11 10 9 31 31 H 1.08995 * 109.47000 * 304.99726 * 12 11 10 32 32 H 1.09003 * 109.46762 * 184.99677 * 12 11 10 33 33 H 1.00901 * 111.00241 * 56.04590 * 13 12 11 34 34 H 1.09003 * 110.07616 * 3.72327 * 16 14 13 35 35 H 1.09005 * 110.07212 * 125.20826 * 16 14 13 36 36 H 1.08998 * 110.72525 * 142.32093 * 17 16 14 37 37 H 1.09004 * 110.71631 * 265.41690 * 17 16 14 38 38 H 1.09009 * 109.89575 * 296.48700 * 20 18 17 39 39 H 1.08997 * 109.89895 * 57.53632 * 20 18 17 40 40 H 1.09001 * 109.07843 * 62.69821 * 21 20 18 41 41 H 1.08995 * 109.07566 * 181.66445 * 21 20 18 42 42 H 1.08994 * 109.08495 * 175.29536 * 22 21 20 43 43 H 1.08997 * 109.08437 * 294.35033 * 22 21 20 44 44 H 1.09001 * 109.91517 * 183.07148 * 23 22 21 45 45 H 1.09006 * 109.87454 * 61.95268 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.4069 -5.8880 1.2564 14 6 4.4584 -6.9133 1.2923 15 1 4.8458 -7.0914 0.2893 16 6 3.9059 -8.2277 1.8979 17 6 4.6852 -8.4621 3.2208 18 6 5.1466 -7.0510 3.6017 19 1 4.3139 -6.4748 4.0051 20 6 6.3541 -6.9760 4.5183 21 6 6.6890 -5.4879 4.7104 22 6 6.9598 -4.7991 3.3762 23 6 5.7897 -4.9898 2.3970 24 6 5.5852 -6.4822 2.2252 25 1 6.5200 -6.9489 1.9144 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 0.9451 -4.9822 -0.8903 30 1 0.9444 -4.9827 0.8897 31 1 3.3220 -5.7956 -0.8406 32 1 2.1818 -6.9375 -0.0893 33 1 2.7945 -5.9696 2.0541 34 1 2.8405 -8.1257 2.1043 35 1 4.0758 -9.0566 1.2107 36 1 4.0287 -8.8734 3.9875 37 1 5.5395 -9.1183 3.0540 38 1 6.1182 -7.4304 5.4807 39 1 7.1990 -7.4917 4.0619 40 1 5.8506 -4.9947 5.2023 41 1 7.5728 -5.4004 5.3423 42 1 7.1096 -3.7335 3.5493 43 1 7.8639 -5.2190 2.9354 44 1 6.0318 -4.5354 1.4362 45 1 4.8867 -4.5363 2.8058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714310672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:57 Heat of formation + Delta-G solvation = -78.986399 kcal Electronic energy + Delta-G solvation = -21093.381905 eV Core-core repulsion = 18109.086213 eV Total energy + Delta-G solvation = -2984.295692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.10067 -36.98770 -35.68145 -33.58965 -32.56335 -31.11017 -28.63214 -28.29165 -26.74145 -25.26734 -22.45366 -22.24187 -21.52446 -20.79361 -20.33075 -19.27889 -16.38790 -15.88334 -15.53250 -15.38862 -14.92454 -14.44688 -14.41161 -14.06218 -13.80192 -13.69301 -13.36453 -13.14086 -12.91120 -12.51364 -12.04393 -11.89976 -11.67163 -11.47005 -11.16575 -11.05207 -10.84950 -10.81079 -10.78223 -10.70255 -10.66721 -10.42805 -10.25467 -10.09486 -9.90490 -9.63122 -9.03398 -8.73523 -8.08550 -8.00547 -6.04566 -4.05287 3.36829 3.38937 3.43435 4.31967 4.40869 4.43062 4.60828 4.69500 4.93943 5.00867 5.08152 5.20704 5.30007 5.31931 5.36762 5.50173 5.54134 5.57717 5.61779 5.63607 5.69765 5.75398 5.81410 5.85298 5.89282 5.92722 6.03129 6.09422 6.10582 6.15948 6.23862 6.32314 6.36084 6.42250 6.43884 6.60190 6.84112 7.17504 7.35230 7.50670 7.67468 7.87317 8.24007 8.69435 9.09469 9.59344 11.07148 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004349 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.413468 B = 6436.008059 C = 7504.657129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.065 3.935 12 C 0.065 3.935 13 N -0.662 5.662 14 C 0.089 3.911 15 H 0.075 0.925 16 C -0.153 4.153 17 C -0.115 4.115 18 C -0.098 4.098 19 H 0.077 0.923 20 C -0.106 4.106 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.092 4.092 24 C -0.077 4.077 25 H 0.065 0.935 26 H 0.263 0.737 27 H 0.001 0.999 28 H 0.002 0.998 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.338 0.662 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.440 -17.395 6.934 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.298 6.298 11 C -0.013 4.013 12 C -0.064 4.064 13 N -0.293 5.293 14 C -0.022 4.022 15 H 0.094 0.906 16 C -0.193 4.193 17 C -0.153 4.153 18 C -0.116 4.116 19 H 0.096 0.904 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.130 4.130 24 C -0.096 4.096 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.157 0.843 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.899 -16.720 6.693 21.051 hybrid contribution -0.607 -0.022 0.115 0.618 sum 10.292 -16.742 6.808 20.798 Atomic orbital electron populations 1.69959 1.06107 1.27110 1.50898 1.24938 0.94939 0.99359 0.95289 0.86416 0.79313 0.82016 0.78843 1.20061 1.21250 1.20007 1.21028 0.94051 0.89358 1.50347 0.91568 1.20167 0.88869 0.83977 0.95035 1.87956 1.34563 1.12310 1.94998 1.22226 0.93940 0.86434 0.98684 1.21994 0.95774 0.95359 0.93246 1.60411 1.15921 1.48936 1.03996 1.22012 0.92934 0.88547 0.98686 0.90636 1.23325 0.99751 0.98975 0.97228 1.22161 0.99462 0.96991 0.96640 1.21924 0.97649 0.95876 0.96181 0.90439 1.21378 0.97443 0.96480 0.99012 1.21526 1.01067 0.95345 0.97571 1.21616 0.98767 1.00076 0.95468 1.21124 0.98202 0.94703 0.98924 1.21640 0.96844 0.97048 0.94088 0.91628 0.92724 0.98112 0.97969 0.94412 0.94961 0.90557 0.95130 0.84302 0.91887 0.92061 0.92134 0.91824 0.92455 0.92162 0.92142 0.92738 0.92236 0.92956 0.91739 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -15.32 9.43 -34.44 -0.32 -15.65 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.45 5.69 36.01 0.20 5.65 16 10 O -0.38 -9.33 10.27 -35.23 -0.36 -9.69 16 11 C 0.07 1.22 6.22 37.16 0.23 1.46 16 12 C 0.07 0.98 5.92 -3.82 -0.02 0.96 16 13 N -0.66 -9.52 5.15 -105.93 -0.55 -10.06 16 14 C 0.09 1.05 3.11 -66.95 -0.21 0.84 16 15 H 0.08 0.91 7.81 -51.94 -0.41 0.51 16 16 C -0.15 -1.52 6.51 -24.49 -0.16 -1.68 16 17 C -0.11 -1.05 6.45 -25.36 -0.16 -1.22 16 18 C -0.10 -1.00 2.37 -89.89 -0.21 -1.21 16 19 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 20 C -0.11 -0.99 5.66 -26.97 -0.15 -1.14 16 21 C -0.12 -1.19 5.85 -26.57 -0.16 -1.35 16 22 C -0.12 -1.39 5.84 -26.55 -0.16 -1.54 16 23 C -0.09 -1.23 5.04 -27.03 -0.14 -1.36 16 24 C -0.08 -0.88 2.16 -90.37 -0.20 -1.08 16 25 H 0.07 0.73 7.97 -51.93 -0.41 0.31 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.34 4.73 8.19 -39.29 -0.32 4.41 16 34 H 0.06 0.64 7.63 -51.93 -0.40 0.24 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.06 0.54 8.02 -51.93 -0.42 0.13 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.19 7.70 -51.93 -0.40 0.79 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -30.79 348.85 -10.14 -40.93 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.66 Total: -1.19 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.55 Total: -15.79 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.19 Total: -36.74 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.36 Total: -9.69 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.79 -10.14 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714310672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.059 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds