Wall clock time and date at job start Mon Mar 30 2020 07:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00280 * 2 1 4 4 H 1.48504 * 109.47330 * 239.99351 * 3 2 1 5 5 H 1.48494 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47270 * 119.99505 * 3 2 1 7 7 C 1.37881 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.42892 * 114.00026 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46715 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47151 * 65.00174 * 12 11 10 14 14 C 1.46906 * 110.99831 * 180.02562 * 13 12 11 15 15 H 1.08989 * 110.24286 * 32.99396 * 14 13 12 16 16 C 1.54913 * 110.27012 * 270.89614 * 14 13 12 17 17 C 1.55316 * 106.38128 * 244.49380 * 16 14 13 18 18 C 1.53270 * 102.93430 * 23.95405 * 17 16 14 19 19 H 1.08999 * 110.40770 * 75.68360 * 18 17 16 20 20 C 1.51788 * 115.78995 * 202.85096 * 18 17 16 21 21 C 1.53733 * 107.25126 * 177.05372 * 20 18 17 22 22 C 1.52573 * 111.49439 * 302.17932 * 21 20 18 23 23 C 1.53766 * 111.46022 * 54.78077 * 22 21 20 24 24 C 1.51614 * 107.26786 * 302.52593 * 23 22 21 25 25 H 1.09002 * 109.76150 * 305.21607 * 24 23 22 26 26 H 0.97009 * 119.99733 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47379 * 59.99732 * 9 7 2 28 28 H 1.08996 * 109.47292 * 299.99863 * 9 7 2 29 29 H 1.08997 * 109.47527 * 60.00569 * 11 10 9 30 30 H 1.09003 * 109.47523 * 299.99562 * 11 10 9 31 31 H 1.08995 * 109.47000 * 304.99726 * 12 11 10 32 32 H 1.09003 * 109.46762 * 184.99677 * 12 11 10 33 33 H 1.00901 * 111.00241 * 56.04590 * 13 12 11 34 34 H 1.09003 * 110.07616 * 3.72327 * 16 14 13 35 35 H 1.09005 * 110.07212 * 125.20826 * 16 14 13 36 36 H 1.08998 * 110.72525 * 142.32093 * 17 16 14 37 37 H 1.09004 * 110.71631 * 265.41690 * 17 16 14 38 38 H 1.09009 * 109.89575 * 296.48700 * 20 18 17 39 39 H 1.08997 * 109.89895 * 57.53632 * 20 18 17 40 40 H 1.09001 * 109.07843 * 62.69821 * 21 20 18 41 41 H 1.08995 * 109.07566 * 181.66445 * 21 20 18 42 42 H 1.08994 * 109.08495 * 175.29536 * 22 21 20 43 43 H 1.08997 * 109.08437 * 294.35033 * 22 21 20 44 44 H 1.09001 * 109.91517 * 183.07148 * 23 22 21 45 45 H 1.09006 * 109.87454 * 61.95268 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.4069 -5.8880 1.2564 14 6 4.4584 -6.9133 1.2923 15 1 4.8458 -7.0914 0.2893 16 6 3.9059 -8.2277 1.8979 17 6 4.6852 -8.4621 3.2208 18 6 5.1466 -7.0510 3.6017 19 1 4.3139 -6.4748 4.0051 20 6 6.3541 -6.9760 4.5183 21 6 6.6890 -5.4879 4.7104 22 6 6.9598 -4.7991 3.3762 23 6 5.7897 -4.9898 2.3970 24 6 5.5852 -6.4822 2.2252 25 1 6.5200 -6.9489 1.9144 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 0.9451 -4.9822 -0.8903 30 1 0.9444 -4.9827 0.8897 31 1 3.3220 -5.7956 -0.8406 32 1 2.1818 -6.9375 -0.0893 33 1 2.7945 -5.9696 2.0541 34 1 2.8405 -8.1257 2.1043 35 1 4.0758 -9.0566 1.2107 36 1 4.0287 -8.8734 3.9875 37 1 5.5395 -9.1183 3.0540 38 1 6.1182 -7.4304 5.4807 39 1 7.1990 -7.4917 4.0619 40 1 5.8506 -4.9947 5.2023 41 1 7.5728 -5.4004 5.3423 42 1 7.1096 -3.7335 3.5493 43 1 7.8639 -5.2190 2.9354 44 1 6.0318 -4.5354 1.4362 45 1 4.8867 -4.5363 2.8058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714310672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:56 Heat of formation + Delta-G solvation = -97.123404 kcal Electronic energy + Delta-G solvation = -21094.168385 eV Core-core repulsion = 18109.086213 eV Total energy + Delta-G solvation = -2985.082172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00543 -38.69330 -36.87549 -35.04421 -34.39367 -32.14453 -30.10312 -29.24486 -28.57683 -26.36682 -24.46574 -23.33405 -22.90954 -21.66428 -21.18222 -20.23522 -18.61915 -17.51594 -16.86302 -16.73537 -16.22432 -16.00771 -15.59759 -15.22383 -14.97798 -14.87502 -14.53349 -14.30756 -14.09943 -13.86415 -13.56250 -13.11771 -13.02894 -12.80789 -12.70144 -12.50363 -12.41473 -12.20919 -11.95227 -11.82961 -11.67595 -11.56325 -11.48457 -11.26378 -11.22474 -10.95178 -10.84532 -10.55949 -10.17550 -9.09399 -8.30997 -6.42804 1.39397 1.44457 1.52803 2.35640 3.02619 3.22280 3.31141 3.54367 3.77125 3.84605 4.13715 4.19355 4.27306 4.32204 4.39285 4.42093 4.53004 4.56465 4.64532 4.68202 4.70215 4.73967 4.76625 4.84024 4.85322 4.96354 5.03951 5.05791 5.08862 5.13430 5.19568 5.22952 5.27183 5.36388 5.45306 5.49081 5.56247 5.56588 5.58593 5.77717 5.98759 6.27571 6.54310 6.60864 6.88044 7.29426 8.81253 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004349 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.413468 B = 6436.008059 C = 7504.657129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.395 6.395 11 C 0.056 3.944 12 C 0.078 3.922 13 N -0.682 5.682 14 C 0.087 3.913 15 H 0.073 0.927 16 C -0.146 4.146 17 C -0.108 4.108 18 C -0.093 4.093 19 H 0.059 0.941 20 C -0.101 4.101 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.089 4.089 24 C -0.077 4.077 25 H 0.076 0.924 26 H 0.270 0.730 27 H -0.017 1.017 28 H -0.018 1.018 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.338 0.662 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.750 -18.484 7.518 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.314 6.314 11 C -0.022 4.022 12 C -0.051 4.051 13 N -0.313 5.313 14 C -0.023 4.023 15 H 0.091 0.909 16 C -0.186 4.186 17 C -0.146 4.146 18 C -0.112 4.112 19 H 0.078 0.922 20 C -0.139 4.139 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.127 4.127 24 C -0.096 4.096 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.000 1.000 28 H 0.000 1.000 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.157 0.843 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.210 -17.841 7.278 22.811 hybrid contribution -1.053 0.271 -0.079 1.090 sum 11.157 -17.570 7.199 22.023 Atomic orbital electron populations 1.70064 1.07737 1.28634 1.50655 1.25936 0.95937 1.03290 0.93934 0.85267 0.78145 0.76845 0.79355 1.19025 1.19813 1.19125 1.21340 0.93964 0.90940 1.52063 0.92312 1.19781 0.88675 0.85078 0.93074 1.87915 1.34609 1.13864 1.95036 1.22592 0.95640 0.84738 0.99214 1.21859 0.94706 0.95187 0.93382 1.60362 1.16428 1.50868 1.03668 1.22071 0.92268 0.89035 0.98923 0.90866 1.23238 0.99595 0.97925 0.97804 1.22136 0.99947 0.96196 0.96286 1.21870 0.97527 0.96395 0.95360 0.92209 1.21365 0.97237 0.95770 0.99495 1.21517 1.01314 0.95897 0.96663 1.21584 0.98234 0.99919 0.95901 1.21020 0.97737 0.96010 0.97931 1.21627 0.97276 0.95534 0.95158 0.90545 0.92075 0.99970 1.00015 0.93697 0.94502 0.91330 0.91757 0.84264 0.92087 0.90729 0.91256 0.90487 0.91189 0.91063 0.93290 0.91224 0.93171 0.91773 0.94307 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 2 C 0.01 0.43 5.46 84.66 0.46 0.90 16 3 Si 0.98 45.59 29.54 68.60 2.03 47.62 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -33.69 9.43 25.60 0.24 -33.45 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.22 5.69 71.24 0.41 12.63 16 10 O -0.39 -20.13 10.27 -148.98 -1.53 -21.66 16 11 C 0.06 2.11 6.22 71.98 0.45 2.56 16 12 C 0.08 2.29 5.92 86.31 0.51 2.80 16 13 N -0.68 -19.66 5.15 -489.05 -2.52 -22.18 16 14 C 0.09 1.97 3.11 45.40 0.14 2.11 16 15 H 0.07 1.69 7.81 -2.39 -0.02 1.67 16 16 C -0.15 -2.55 6.51 32.04 0.21 -2.35 16 17 C -0.11 -1.68 6.45 31.48 0.20 -1.48 16 18 C -0.09 -1.76 2.37 -10.32 -0.02 -1.79 16 19 H 0.06 1.35 8.07 -2.39 -0.02 1.33 16 20 C -0.10 -1.66 5.66 30.44 0.17 -1.49 16 21 C -0.12 -2.22 5.85 30.70 0.18 -2.04 16 22 C -0.12 -2.68 5.84 30.71 0.18 -2.50 16 23 C -0.09 -2.45 5.04 30.40 0.15 -2.30 16 24 C -0.08 -1.70 2.16 -10.63 -0.02 -1.73 16 25 H 0.08 1.55 7.97 -2.39 -0.02 1.53 16 26 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 27 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 28 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.34 9.55 8.19 -89.69 -0.73 8.81 16 34 H 0.06 1.11 7.63 -2.39 -0.02 1.09 16 35 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.07 1.05 8.02 -2.39 -0.02 1.03 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.58 7.70 -2.38 -0.02 1.56 16 Total: -1.00 -67.32 348.85 1.71 -65.60 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.19 Total: 15.73 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.26 Total: -28.12 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -2.23 Total: -79.17 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.53 Total: -21.66 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -67.32 1.71 -65.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714310672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.518 kcal (2) G-P(sol) polarization free energy of solvation -67.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds