Wall clock time and date at job start Mon Mar 30 2020 07:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00320 * 2 1 4 4 H 1.48498 * 109.46933 * 270.00279 * 3 2 1 5 5 H 1.48504 * 109.46936 * 29.99677 * 3 2 1 6 6 H 1.48498 * 109.47257 * 149.99728 * 3 2 1 7 7 C 1.37883 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99322 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00445 * 179.97438 * 7 2 1 10 10 O 1.42899 * 109.47503 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99984 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46636 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47069 * 65.00817 * 12 11 10 14 14 C 1.46906 * 111.00016 * 179.97438 * 13 12 11 15 15 H 1.08992 * 110.33908 * 35.64898 * 14 13 12 16 16 C 1.53922 * 110.29237 * 273.54320 * 14 13 12 17 17 C 1.53957 * 107.00882 * 221.70199 * 16 14 13 18 18 C 1.53374 * 106.27940 * 358.76742 * 17 16 14 19 19 H 1.09003 * 107.21216 * 267.30262 * 18 17 16 20 20 C 1.49900 * 112.78867 * 149.16354 * 18 17 16 21 21 C 1.51507 * 115.11242 * 277.68235 * 20 18 17 22 22 C 1.52610 * 111.03325 * 312.62915 * 21 20 18 23 23 C 1.52882 * 108.79000 * 59.36671 * 22 21 20 24 24 C 1.51675 * 109.31443 * 295.48794 * 23 22 21 25 25 H 1.08998 * 110.91391 * 291.62802 * 24 23 22 26 26 H 0.97000 * 120.00037 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47022 * 59.99890 * 9 7 2 28 28 H 1.09001 * 109.47186 * 300.00360 * 9 7 2 29 29 H 1.08998 * 109.46482 * 60.00900 * 11 10 9 30 30 H 1.08991 * 109.47178 * 300.00574 * 11 10 9 31 31 H 1.08999 * 109.47363 * 305.00527 * 12 11 10 32 32 H 1.09003 * 109.46539 * 185.00138 * 12 11 10 33 33 H 1.00901 * 111.00019 * 56.04050 * 13 12 11 34 34 H 1.09002 * 109.95961 * 102.30467 * 16 14 13 35 35 H 1.08999 * 109.96207 * 341.10050 * 16 14 13 36 36 H 1.09005 * 110.09402 * 117.96858 * 17 16 14 37 37 H 1.08997 * 110.09351 * 239.49908 * 17 16 14 38 38 H 1.09003 * 108.35974 * 39.13957 * 20 18 17 39 39 H 1.08999 * 108.35632 * 156.22341 * 20 18 17 40 40 H 1.09000 * 109.16770 * 73.02876 * 21 20 18 41 41 H 1.08998 * 109.17230 * 192.27908 * 21 20 18 42 42 H 1.08998 * 109.58721 * 179.15742 * 22 21 20 43 43 H 1.09003 * 109.58486 * 299.43267 * 22 21 20 44 44 H 1.08999 * 109.46969 * 55.36879 * 23 22 21 45 45 H 1.09000 * 109.47101 * 175.36616 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1942 0.0000 10 8 3.9878 -2.5414 0.0013 11 6 5.4124 -2.6542 0.0003 12 6 5.8068 -4.1325 0.0012 13 7 5.3667 -4.7575 -1.2533 14 6 5.7298 -6.1805 -1.2882 15 1 5.6474 -6.6170 -0.2929 16 6 7.1600 -6.3534 -1.8303 17 6 7.1369 -7.5614 -2.7845 18 6 5.7004 -8.0984 -2.7637 19 1 5.6576 -8.8756 -2.0006 20 6 5.2947 -8.7218 -4.0652 21 6 4.8295 -7.7470 -5.1276 22 6 3.8268 -6.7494 -4.5545 23 6 4.4936 -5.9819 -3.4127 24 6 4.8223 -6.9434 -2.2866 25 1 3.9130 -7.3107 -1.8107 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6797 0.8894 28 1 3.8745 -0.6809 -0.8905 29 1 5.8157 -2.1697 0.8894 30 1 5.8144 -2.1717 -0.8905 31 1 5.3315 -4.6349 0.8437 32 1 6.8897 -4.2195 0.0900 33 1 5.7427 -4.2689 -2.0520 34 1 7.8495 -6.5423 -1.0075 35 1 7.4636 -5.4574 -2.3716 36 1 7.4046 -7.2469 -3.7933 37 1 7.8292 -8.3276 -2.4355 38 1 6.1450 -9.2786 -4.4590 39 1 4.4877 -9.4282 -3.8706 40 1 5.6909 -7.2046 -5.5175 41 1 4.3581 -8.3006 -5.9396 42 1 3.5198 -6.0516 -5.3334 43 1 2.9545 -7.2837 -4.1780 44 1 5.4116 -5.5184 -3.7739 45 1 3.8154 -5.2099 -3.0492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714310673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:59 Heat of formation + Delta-G solvation = -73.045808 kcal Electronic energy + Delta-G solvation = -21038.323272 eV Core-core repulsion = 18054.285183 eV Total energy + Delta-G solvation = -2984.038089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29981 -37.18310 -35.73553 -33.63083 -32.55366 -31.45575 -28.97086 -28.69065 -27.24142 -25.23900 -22.94036 -21.93471 -21.74051 -21.33475 -20.00021 -18.36647 -16.85493 -16.17738 -15.83040 -15.53069 -15.37252 -14.63322 -14.37926 -14.27413 -13.87657 -13.73176 -13.24242 -13.08687 -12.73521 -12.61488 -12.37095 -11.98605 -11.94363 -11.85233 -11.50128 -11.31738 -11.15237 -10.89800 -10.76642 -10.67087 -10.59980 -10.44293 -10.19207 -9.89353 -9.84202 -9.81665 -9.11129 -8.77896 -8.39613 -8.07739 -6.06226 -4.04353 3.27618 3.34356 3.35986 4.20112 4.39778 4.44234 4.47900 4.68770 4.77224 4.93546 5.00756 5.06786 5.22789 5.25047 5.30864 5.37199 5.50188 5.52035 5.53629 5.61795 5.65606 5.68192 5.75565 5.81562 5.83292 5.88669 5.92921 5.97249 6.07534 6.10718 6.13990 6.17452 6.25457 6.31142 6.39360 6.56947 6.66115 6.67996 7.05897 7.27633 7.60325 7.66270 8.11631 8.74812 9.07473 9.53676 11.07018 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025983 B = 0.003870 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.380825 B = 7232.708366 C = 7917.048944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.167 3.833 10 O -0.364 6.364 11 C 0.061 3.939 12 C 0.065 3.935 13 N -0.665 5.665 14 C 0.087 3.913 15 H 0.078 0.922 16 C -0.153 4.153 17 C -0.112 4.112 18 C -0.084 4.084 19 H 0.059 0.941 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.105 4.105 24 C -0.068 4.068 25 H 0.078 0.922 26 H 0.265 0.735 27 H -0.001 1.001 28 H -0.004 1.004 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.340 0.660 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.877 -15.656 -7.198 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.283 6.283 11 C -0.017 4.017 12 C -0.065 4.065 13 N -0.296 5.296 14 C -0.024 4.024 15 H 0.096 0.904 16 C -0.192 4.192 17 C -0.151 4.151 18 C -0.103 4.103 19 H 0.077 0.923 20 C -0.141 4.141 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.143 4.143 24 C -0.087 4.087 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.017 0.983 28 H 0.014 0.986 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.159 0.841 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.946 -15.792 -6.945 22.825 hybrid contribution 1.657 1.237 -0.113 2.071 sum 16.603 -14.555 -7.058 23.180 Atomic orbital electron populations 1.69879 1.06039 1.26957 1.50686 1.24767 0.94779 0.98667 0.94795 0.86861 0.80328 0.83894 0.78696 1.19995 1.20857 1.19199 1.20906 0.88333 0.95292 1.50690 0.89891 1.20581 0.96204 0.80002 0.94022 1.88024 1.16758 1.28631 1.94858 1.22318 0.85748 0.94876 0.98798 1.21979 0.96319 0.94644 0.93509 1.60427 1.63956 1.01212 1.03988 1.22413 0.91568 0.89460 0.98970 0.90394 1.22860 0.98692 0.98665 0.99007 1.21972 0.96557 0.97105 0.99419 1.20676 0.94816 0.97737 0.97081 0.92273 1.20471 1.00611 0.98172 0.94856 1.21119 0.99101 0.97512 0.97522 1.21460 0.98128 0.97919 0.98393 1.21177 1.00741 0.98075 0.94271 1.21377 0.97527 0.93992 0.95844 0.90327 0.92455 0.98309 0.98623 0.94186 0.94767 0.90349 0.94917 0.84061 0.92233 0.91986 0.91995 0.92291 0.92592 0.92614 0.92599 0.92522 0.92191 0.92087 0.92866 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.51 -15.62 9.99 -34.44 -0.34 -15.96 16 8 H 0.08 2.77 8.06 -52.49 -0.42 2.34 16 9 C 0.17 4.35 4.76 36.00 0.17 4.52 16 10 O -0.36 -8.66 10.27 -35.23 -0.36 -9.02 16 11 C 0.06 1.07 6.22 37.16 0.23 1.30 16 12 C 0.06 0.93 5.91 -3.83 -0.02 0.91 16 13 N -0.67 -9.37 5.06 -105.10 -0.53 -9.90 16 14 C 0.09 1.01 2.93 -66.17 -0.19 0.82 16 15 H 0.08 0.93 7.86 -51.93 -0.41 0.53 16 16 C -0.15 -1.48 6.02 -25.75 -0.15 -1.64 16 17 C -0.11 -1.00 6.12 -26.04 -0.16 -1.16 16 18 C -0.08 -0.80 2.48 -92.10 -0.23 -1.03 16 19 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 20 C -0.10 -0.91 5.19 -29.02 -0.15 -1.06 16 21 C -0.11 -1.06 5.91 -27.69 -0.16 -1.22 16 22 C -0.12 -1.31 5.93 -26.99 -0.16 -1.47 16 23 C -0.11 -1.27 3.90 -27.46 -0.11 -1.37 16 24 C -0.07 -0.78 3.14 -90.37 -0.28 -1.06 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 28 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 33 H 0.34 4.56 7.08 -39.29 -0.28 4.28 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.61 7.53 -51.93 -0.39 0.22 16 36 H 0.06 0.55 7.98 -51.93 -0.41 0.13 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.44 8.00 -51.93 -0.42 0.03 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 45 H 0.08 1.26 7.61 -51.93 -0.40 0.86 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -31.53 341.53 -9.83 -41.36 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.52 Total: -0.92 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -1.66 Total: -16.40 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.24 Total: -37.22 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.36 Total: -9.02 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.53 -9.83 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714310673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.690 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds