Wall clock time and date at job start Mon Mar 30 2020 07:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00320 * 2 1 4 4 H 1.48498 * 109.46933 * 270.00279 * 3 2 1 5 5 H 1.48504 * 109.46936 * 29.99677 * 3 2 1 6 6 H 1.48498 * 109.47257 * 149.99728 * 3 2 1 7 7 C 1.37883 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99322 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00445 * 179.97438 * 7 2 1 10 10 O 1.42899 * 109.47503 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99984 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46636 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47069 * 65.00817 * 12 11 10 14 14 C 1.46906 * 111.00016 * 179.97438 * 13 12 11 15 15 H 1.08992 * 110.33908 * 35.64898 * 14 13 12 16 16 C 1.53922 * 110.29237 * 273.54320 * 14 13 12 17 17 C 1.53957 * 107.00882 * 221.70199 * 16 14 13 18 18 C 1.53374 * 106.27940 * 358.76742 * 17 16 14 19 19 H 1.09003 * 107.21216 * 267.30262 * 18 17 16 20 20 C 1.49900 * 112.78867 * 149.16354 * 18 17 16 21 21 C 1.51507 * 115.11242 * 277.68235 * 20 18 17 22 22 C 1.52610 * 111.03325 * 312.62915 * 21 20 18 23 23 C 1.52882 * 108.79000 * 59.36671 * 22 21 20 24 24 C 1.51675 * 109.31443 * 295.48794 * 23 22 21 25 25 H 1.08998 * 110.91391 * 291.62802 * 24 23 22 26 26 H 0.97000 * 120.00037 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47022 * 59.99890 * 9 7 2 28 28 H 1.09001 * 109.47186 * 300.00360 * 9 7 2 29 29 H 1.08998 * 109.46482 * 60.00900 * 11 10 9 30 30 H 1.08991 * 109.47178 * 300.00574 * 11 10 9 31 31 H 1.08999 * 109.47363 * 305.00527 * 12 11 10 32 32 H 1.09003 * 109.46539 * 185.00138 * 12 11 10 33 33 H 1.00901 * 111.00019 * 56.04050 * 13 12 11 34 34 H 1.09002 * 109.95961 * 102.30467 * 16 14 13 35 35 H 1.08999 * 109.96207 * 341.10050 * 16 14 13 36 36 H 1.09005 * 110.09402 * 117.96858 * 17 16 14 37 37 H 1.08997 * 110.09351 * 239.49908 * 17 16 14 38 38 H 1.09003 * 108.35974 * 39.13957 * 20 18 17 39 39 H 1.08999 * 108.35632 * 156.22341 * 20 18 17 40 40 H 1.09000 * 109.16770 * 73.02876 * 21 20 18 41 41 H 1.08998 * 109.17230 * 192.27908 * 21 20 18 42 42 H 1.08998 * 109.58721 * 179.15742 * 22 21 20 43 43 H 1.09003 * 109.58486 * 299.43267 * 22 21 20 44 44 H 1.08999 * 109.46969 * 55.36879 * 23 22 21 45 45 H 1.09000 * 109.47101 * 175.36616 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1942 0.0000 10 8 3.9878 -2.5414 0.0013 11 6 5.4124 -2.6542 0.0003 12 6 5.8068 -4.1325 0.0012 13 7 5.3667 -4.7575 -1.2533 14 6 5.7298 -6.1805 -1.2882 15 1 5.6474 -6.6170 -0.2929 16 6 7.1600 -6.3534 -1.8303 17 6 7.1369 -7.5614 -2.7845 18 6 5.7004 -8.0984 -2.7637 19 1 5.6576 -8.8756 -2.0006 20 6 5.2947 -8.7218 -4.0652 21 6 4.8295 -7.7470 -5.1276 22 6 3.8268 -6.7494 -4.5545 23 6 4.4936 -5.9819 -3.4127 24 6 4.8223 -6.9434 -2.2866 25 1 3.9130 -7.3107 -1.8107 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6797 0.8894 28 1 3.8745 -0.6809 -0.8905 29 1 5.8157 -2.1697 0.8894 30 1 5.8144 -2.1717 -0.8905 31 1 5.3315 -4.6349 0.8437 32 1 6.8897 -4.2195 0.0900 33 1 5.7427 -4.2689 -2.0520 34 1 7.8495 -6.5423 -1.0075 35 1 7.4636 -5.4574 -2.3716 36 1 7.4046 -7.2469 -3.7933 37 1 7.8292 -8.3276 -2.4355 38 1 6.1450 -9.2786 -4.4590 39 1 4.4877 -9.4282 -3.8706 40 1 5.6909 -7.2046 -5.5175 41 1 4.3581 -8.3006 -5.9396 42 1 3.5198 -6.0516 -5.3334 43 1 2.9545 -7.2837 -4.1780 44 1 5.4116 -5.5184 -3.7739 45 1 3.8154 -5.2099 -3.0492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714310673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:59 Heat of formation + Delta-G solvation = -92.763220 kcal Electronic energy + Delta-G solvation = -21039.178283 eV Core-core repulsion = 18054.285183 eV Total energy + Delta-G solvation = -2984.893100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16646 -38.77804 -36.86851 -34.95508 -34.41122 -32.47181 -30.51079 -29.63743 -28.83575 -26.24950 -23.96664 -23.81683 -22.91898 -22.34130 -20.89086 -19.21488 -19.04996 -17.51042 -17.02279 -16.81547 -16.68303 -16.18335 -15.61851 -15.32840 -15.01921 -14.71854 -14.56699 -14.47958 -14.18706 -13.85774 -13.49584 -13.24149 -13.11672 -12.90908 -12.69029 -12.65616 -12.40656 -12.23315 -12.06206 -11.91851 -11.80189 -11.53065 -11.36999 -11.30408 -11.03131 -10.91354 -10.76825 -10.70432 -10.29251 -9.10564 -8.36089 -6.43710 1.32878 1.36576 1.47426 2.30152 2.96321 3.12614 3.24077 3.62530 3.66277 3.90662 4.12254 4.19616 4.25615 4.27807 4.32304 4.40463 4.48667 4.54435 4.58373 4.61121 4.63852 4.69403 4.73733 4.80761 4.85837 4.95447 4.99167 5.01187 5.06220 5.09653 5.16657 5.27301 5.29048 5.30940 5.37749 5.46046 5.46208 5.55552 5.66882 5.70693 5.96589 6.25785 6.56515 6.61066 6.83294 7.21116 8.81464 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025983 B = 0.003870 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.380825 B = 7232.708366 C = 7917.048944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.544 4.544 8 H 0.026 0.974 9 C 0.179 3.821 10 O -0.394 6.394 11 C 0.051 3.949 12 C 0.073 3.927 13 N -0.688 5.688 14 C 0.086 3.914 15 H 0.072 0.928 16 C -0.145 4.145 17 C -0.108 4.108 18 C -0.080 4.080 19 H 0.062 0.938 20 C -0.104 4.104 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.071 4.071 25 H 0.058 0.942 26 H 0.273 0.727 27 H 0.010 0.990 28 H 0.008 0.992 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.342 0.658 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.072 -15.266 -7.783 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.582 4.582 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.314 6.314 11 C -0.026 4.026 12 C -0.056 4.056 13 N -0.320 5.320 14 C -0.024 4.024 15 H 0.090 0.910 16 C -0.184 4.184 17 C -0.146 4.146 18 C -0.099 4.099 19 H 0.081 0.919 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.135 4.135 24 C -0.090 4.090 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.157 -15.433 -7.531 24.992 hybrid contribution 0.574 1.012 0.080 1.166 sum 18.732 -14.422 -7.450 24.787 Atomic orbital electron populations 1.70042 1.08316 1.28742 1.51252 1.25867 0.95805 1.03447 0.93463 0.85577 0.79400 0.77369 0.79770 1.18386 1.19779 1.16893 1.21176 0.91131 0.93711 1.52142 0.95523 1.20279 0.93200 0.81474 0.94720 1.87981 1.20896 1.27387 1.95104 1.22698 0.82320 0.97440 1.00130 1.21900 0.98089 0.92430 0.93224 1.60381 1.65042 1.02537 1.04000 1.22423 0.93154 0.87972 0.98861 0.90968 1.22768 0.96978 0.99210 0.99484 1.21959 0.96089 0.97022 0.99497 1.20638 0.94806 0.96793 0.97630 0.91916 1.20480 1.01305 0.98036 0.94294 1.21086 0.98660 0.97161 0.97876 1.21464 0.98427 0.98268 0.97898 1.21040 1.00113 0.97442 0.94919 1.21367 0.97309 0.94805 0.95565 0.92387 0.91829 0.97280 0.97415 0.92623 0.93394 0.91663 0.91390 0.83762 0.91208 0.91857 0.91528 0.90778 0.90851 0.92659 0.92075 0.91432 0.92468 0.92966 0.92230 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.76 13.96 21.45 0.30 -60.46 16 2 C 0.01 0.71 5.47 84.66 0.46 1.18 16 3 Si 0.96 44.21 27.47 68.60 1.88 46.09 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 7 C -0.54 -34.26 9.99 25.60 0.26 -34.00 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 9 C 0.18 9.28 4.76 71.23 0.34 9.62 16 10 O -0.39 -19.00 10.27 -148.98 -1.53 -20.53 16 11 C 0.05 1.74 6.22 71.98 0.45 2.18 16 12 C 0.07 2.01 5.91 86.30 0.51 2.52 16 13 N -0.69 -19.31 5.06 -486.44 -2.46 -21.77 16 14 C 0.09 1.96 2.93 45.91 0.13 2.09 16 15 H 0.07 1.71 7.86 -2.39 -0.02 1.69 16 16 C -0.15 -2.48 6.02 31.23 0.19 -2.29 16 17 C -0.11 -1.62 6.12 31.04 0.19 -1.43 16 18 C -0.08 -1.38 2.48 -11.75 -0.03 -1.41 16 19 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 20 C -0.10 -1.61 5.19 29.11 0.15 -1.46 16 21 C -0.11 -1.86 5.91 29.98 0.18 -1.68 16 22 C -0.12 -2.69 5.93 30.43 0.18 -2.51 16 23 C -0.10 -2.41 3.90 30.12 0.12 -2.30 16 24 C -0.07 -1.64 3.14 -10.63 -0.03 -1.68 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 27 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 28 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 32 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 33 H 0.34 9.03 7.08 -89.69 -0.63 8.40 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.09 7.53 -2.39 -0.02 1.07 16 36 H 0.07 0.97 7.98 -2.38 -0.02 0.95 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.93 8.00 -2.39 -0.02 0.91 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 1.37 7.12 -2.39 -0.02 1.36 16 45 H 0.05 1.50 7.61 -2.39 -0.02 1.48 16 Total: -1.00 -71.01 341.53 1.52 -69.49 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.24 Total: 18.35 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 3.09 Total: -31.18 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -2.16 Total: -82.23 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.53 Total: -20.53 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -71.01 1.52 -69.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714310673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.270 kcal (2) G-P(sol) polarization free energy of solvation -71.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds