Wall clock time and date at job start Mon Mar 30 2020 06:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46770 * 240.00712 * 2 1 3 5 5 O 1.45191 * 109.47410 * 120.00275 * 2 1 3 6 6 C 1.34641 * 117.00015 * 60.00046 * 5 2 1 7 7 O 1.21513 * 120.00001 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00228 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00206 * 180.27606 * 8 6 5 10 10 H 1.09002 * 115.52712 * 65.41665 * 9 8 6 11 11 C 1.53002 * 117.46010 * 279.91976 * 9 8 6 12 12 H 1.09001 * 119.29930 * 141.09282 * 11 9 8 13 13 C 1.54265 * 118.19679 * 346.95224 * 11 9 8 14 14 C 1.54889 * 104.19761 * 319.43221 * 13 11 9 15 15 C 1.54894 * 102.74743 * 322.05551 * 14 13 11 16 16 H 1.08997 * 110.48638 * 279.13428 * 15 14 13 17 17 C 1.50697 * 110.48646 * 156.61734 * 15 14 13 18 18 H 1.07994 * 120.00311 * 241.45565 * 17 15 14 19 19 C 1.37880 * 119.99823 * 61.45465 * 17 15 14 20 20 N 1.31517 * 119.99833 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00260 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46953 * 60.00154 * 21 19 17 23 23 H 1.48497 * 109.47102 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46915 * 300.00403 * 21 19 17 25 25 C 1.53004 * 117.46057 * 210.91604 * 9 8 6 26 26 H 1.09002 * 119.29465 * 218.90005 * 25 9 8 27 27 H 1.08999 * 109.47006 * 299.99732 * 1 2 3 28 28 H 1.09002 * 109.47724 * 59.99314 * 1 2 3 29 29 H 1.08996 * 109.47473 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46902 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47088 * 300.00447 * 3 2 1 32 32 H 1.08999 * 109.46994 * 60.00261 * 3 2 1 33 33 H 1.09003 * 109.46437 * 299.99369 * 4 2 1 34 34 H 1.08996 * 109.47644 * 59.99786 * 4 2 1 35 35 H 1.09003 * 109.47060 * 180.02562 * 4 2 1 36 36 H 0.97000 * 120.00042 * 359.97438 * 8 6 5 37 37 H 1.09001 * 110.48863 * 78.10572 * 13 11 9 38 38 H 1.09003 * 110.49091 * 200.61862 * 13 11 9 39 39 H 1.09004 * 110.75976 * 80.36980 * 14 13 11 40 40 H 1.09000 * 110.75563 * 203.74495 * 14 13 11 41 41 H 0.97001 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5038 8 7 2.0673 -2.6655 2.4169 9 6 1.6787 -4.0686 2.5800 10 1 2.0785 -4.7564 1.8349 11 6 0.2772 -4.3539 3.1235 12 1 -0.2953 -5.1853 2.7123 13 6 -0.5145 -3.1860 3.7471 14 6 0.5437 -2.4023 4.5626 15 6 1.4279 -3.5308 5.1490 16 1 0.9586 -3.9629 6.0328 17 6 2.7996 -3.0052 5.4852 18 1 3.6699 -3.4132 4.9928 19 6 2.9436 -2.0035 6.4216 20 7 1.8838 -1.5070 7.0216 21 14 4.6440 -1.3524 6.8391 22 1 5.2740 -0.7934 5.6160 23 1 4.5275 -0.2874 7.8674 24 1 5.4822 -2.4592 7.3660 25 6 1.5127 -4.5934 4.0076 26 1 1.8509 -5.6013 4.2481 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6765 -1.7488 -1.2494 34 1 1.6765 -0.2073 -2.1393 35 1 3.1299 -0.7216 -1.2492 36 1 2.6269 -2.2367 3.0831 37 1 -0.9399 -2.5541 2.9674 38 1 -1.3002 -3.5639 4.4014 39 1 1.1286 -1.7517 3.9123 40 1 0.0703 -1.8289 5.3596 41 1 1.9851 -0.8024 7.6806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714532281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:20 Heat of formation + Delta-G solvation = -56.474161 kcal Electronic energy + Delta-G solvation = -21921.031616 eV Core-core repulsion = 18801.879033 eV Total energy + Delta-G solvation = -3119.152583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44401 -39.04333 -36.35079 -33.88347 -33.07567 -32.25929 -29.75969 -27.95527 -27.28309 -27.22071 -23.78200 -23.18622 -20.96097 -19.60407 -18.91939 -18.69600 -17.60070 -16.39965 -16.19753 -15.84848 -15.26952 -14.50257 -14.22567 -14.05483 -13.87297 -13.36986 -13.07181 -12.49696 -12.36785 -12.16864 -12.02617 -11.72664 -11.67423 -11.47348 -11.26709 -11.05472 -11.03364 -10.77979 -10.59339 -10.13606 -10.09302 -9.99282 -9.74801 -9.60202 -9.33771 -9.04402 -8.83415 -8.39268 -7.97842 -6.06436 -4.11387 2.69528 3.28959 3.34541 3.36714 3.41456 4.35641 4.49012 4.67995 4.88330 4.91882 5.06312 5.22942 5.36663 5.51253 5.55096 5.63822 5.73134 5.78242 5.81833 5.90684 6.00377 6.00652 6.08579 6.26763 6.27689 6.43190 6.50358 6.50681 6.62880 6.75287 6.91155 6.94493 7.12987 7.23781 7.36334 7.67488 7.83518 7.95795 8.18278 8.36167 8.91903 9.02599 9.53722 11.01643 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.007160 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.519691 B = 3909.541632 C = 4755.420890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.647 3.353 7 O -0.581 6.581 8 N -0.663 5.663 9 C 0.112 3.888 10 H 0.109 0.891 11 C -0.175 4.175 12 H 0.098 0.902 13 C -0.095 4.095 14 C -0.112 4.112 15 C 0.076 3.924 16 H 0.037 0.963 17 C -0.520 4.520 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.887 3.113 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.134 4.134 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.423 0.577 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 1.920 -11.557 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.401 3.599 7 O -0.472 6.472 8 N -0.324 5.324 9 C 0.008 3.992 10 H 0.127 0.873 11 C -0.195 4.195 12 H 0.116 0.884 13 C -0.133 4.133 14 C -0.150 4.150 15 C 0.058 3.942 16 H 0.055 0.945 17 C -0.558 4.558 18 H 0.075 0.925 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.715 3.285 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.153 4.153 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.264 0.736 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.559 1.880 -11.845 12.094 hybrid contribution 1.067 0.546 0.491 1.295 sum -0.492 2.426 -11.354 11.620 Atomic orbital electron populations 1.22498 0.94281 1.05141 1.02001 1.21926 0.94253 0.91396 0.82521 1.21846 1.02122 0.92996 1.02814 1.22504 1.01316 1.03629 0.96399 1.86339 1.71651 1.24275 1.45778 1.18124 0.79092 0.80146 0.82571 1.90813 1.41850 1.70489 1.44047 1.44528 1.53933 1.11344 1.22567 1.21426 0.98791 0.80962 0.98037 0.87333 1.23496 0.90623 1.01169 1.04163 0.88440 1.21930 0.98079 0.95481 0.97781 1.22713 0.95838 0.98529 0.97926 1.19454 0.95334 0.88975 0.90462 0.94469 1.21031 0.92364 1.19565 1.22885 0.92453 1.24981 0.96371 0.96527 0.95755 1.69948 1.28474 1.27073 1.26650 0.86735 0.84870 0.78609 0.78279 1.20128 1.21378 1.20293 1.24266 0.99017 1.00714 0.91257 0.87623 0.92186 0.91751 0.89218 0.91635 0.90586 0.91427 0.89286 0.91674 0.92445 0.73585 0.93655 0.92396 0.92070 0.91342 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.37 37.15 0.31 -2.26 16 2 C 0.14 1.98 1.13 -90.62 -0.10 1.87 16 3 C -0.14 -1.62 8.85 37.16 0.33 -1.30 16 4 C -0.18 -2.42 8.37 37.16 0.31 -2.10 16 5 O -0.37 -6.64 9.94 -40.33 -0.40 -7.04 16 6 C 0.65 12.59 7.88 54.05 0.43 13.02 16 7 O -0.58 -11.71 11.88 -19.28 -0.23 -11.94 16 8 N -0.66 -13.09 3.08 -58.73 -0.18 -13.27 16 9 C 0.11 2.11 5.95 -67.93 -0.40 1.70 16 10 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 11 C -0.17 -3.26 7.01 -89.54 -0.63 -3.89 16 12 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 13 C -0.10 -1.90 6.62 -25.07 -0.17 -2.07 16 14 C -0.11 -2.56 4.97 -24.74 -0.12 -2.68 16 15 C 0.08 1.79 2.61 -89.08 -0.23 1.55 16 16 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.52 -13.17 7.21 -34.44 -0.25 -13.41 16 18 H 0.06 1.43 7.78 -52.49 -0.41 1.02 16 19 C 0.07 1.74 5.33 -17.82 -0.09 1.65 16 20 N -0.88 -24.27 12.01 55.43 0.67 -23.61 16 21 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 C -0.13 -2.62 6.56 -88.50 -0.58 -3.21 16 26 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.49 5.88 -51.93 -0.31 1.18 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.39 5.88 -51.93 -0.31 1.09 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.42 8.90 6.25 -40.82 -0.25 8.64 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.44 4.99 -51.93 -0.26 1.18 16 40 H 0.07 1.72 7.37 -51.93 -0.38 1.34 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -27.63 320.92 -8.08 -35.71 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.55 Total: 11.04 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.20 Total: -11.12 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.48 Total: -36.87 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.63 Total: -18.98 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.63 -8.08 -35.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714532281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.763 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds