Wall clock time and date at job start Mon Mar 30 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46770 * 240.00712 * 2 1 3 5 5 O 1.45191 * 109.47410 * 120.00275 * 2 1 3 6 6 C 1.34641 * 117.00015 * 60.00046 * 5 2 1 7 7 O 1.21513 * 120.00001 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00228 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00206 * 180.27606 * 8 6 5 10 10 H 1.09002 * 115.52712 * 65.41665 * 9 8 6 11 11 C 1.53002 * 117.46010 * 279.91976 * 9 8 6 12 12 H 1.09001 * 119.29930 * 141.09282 * 11 9 8 13 13 C 1.54265 * 118.19679 * 346.95224 * 11 9 8 14 14 C 1.54889 * 104.19761 * 319.43221 * 13 11 9 15 15 C 1.54894 * 102.74743 * 322.05551 * 14 13 11 16 16 H 1.08997 * 110.48638 * 279.13428 * 15 14 13 17 17 C 1.50697 * 110.48646 * 156.61734 * 15 14 13 18 18 H 1.07994 * 120.00311 * 241.45565 * 17 15 14 19 19 C 1.37880 * 119.99823 * 61.45465 * 17 15 14 20 20 N 1.31517 * 119.99833 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00260 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46953 * 60.00154 * 21 19 17 23 23 H 1.48497 * 109.47102 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46915 * 300.00403 * 21 19 17 25 25 C 1.53004 * 117.46057 * 210.91604 * 9 8 6 26 26 H 1.09002 * 119.29465 * 218.90005 * 25 9 8 27 27 H 1.08999 * 109.47006 * 299.99732 * 1 2 3 28 28 H 1.09002 * 109.47724 * 59.99314 * 1 2 3 29 29 H 1.08996 * 109.47473 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46902 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47088 * 300.00447 * 3 2 1 32 32 H 1.08999 * 109.46994 * 60.00261 * 3 2 1 33 33 H 1.09003 * 109.46437 * 299.99369 * 4 2 1 34 34 H 1.08996 * 109.47644 * 59.99786 * 4 2 1 35 35 H 1.09003 * 109.47060 * 180.02562 * 4 2 1 36 36 H 0.97000 * 120.00042 * 359.97438 * 8 6 5 37 37 H 1.09001 * 110.48863 * 78.10572 * 13 11 9 38 38 H 1.09003 * 110.49091 * 200.61862 * 13 11 9 39 39 H 1.09004 * 110.75976 * 80.36980 * 14 13 11 40 40 H 1.09000 * 110.75563 * 203.74495 * 14 13 11 41 41 H 0.97001 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5038 8 7 2.0673 -2.6655 2.4169 9 6 1.6787 -4.0686 2.5800 10 1 2.0785 -4.7564 1.8349 11 6 0.2772 -4.3539 3.1235 12 1 -0.2953 -5.1853 2.7123 13 6 -0.5145 -3.1860 3.7471 14 6 0.5437 -2.4023 4.5626 15 6 1.4279 -3.5308 5.1490 16 1 0.9586 -3.9629 6.0328 17 6 2.7996 -3.0052 5.4852 18 1 3.6699 -3.4132 4.9928 19 6 2.9436 -2.0035 6.4216 20 7 1.8838 -1.5070 7.0216 21 14 4.6440 -1.3524 6.8391 22 1 5.2740 -0.7934 5.6160 23 1 4.5275 -0.2874 7.8674 24 1 5.4822 -2.4592 7.3660 25 6 1.5127 -4.5934 4.0076 26 1 1.8509 -5.6013 4.2481 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6765 -1.7488 -1.2494 34 1 1.6765 -0.2073 -2.1393 35 1 3.1299 -0.7216 -1.2492 36 1 2.6269 -2.2367 3.0831 37 1 -0.9399 -2.5541 2.9674 38 1 -1.3002 -3.5639 4.4014 39 1 1.1286 -1.7517 3.9123 40 1 0.0703 -1.8289 5.3596 41 1 1.9851 -0.8024 7.6806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714532281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:19 Heat of formation + Delta-G solvation = -70.658024 kcal Electronic energy + Delta-G solvation = -21921.646674 eV Core-core repulsion = 18801.879033 eV Total energy + Delta-G solvation = -3119.767642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89686 -40.55658 -37.74683 -35.22887 -34.91359 -33.80911 -31.47104 -29.79232 -28.30575 -28.25410 -25.69379 -24.65021 -22.50767 -21.00169 -20.54174 -20.25206 -19.07795 -18.22085 -17.72373 -17.19093 -16.77699 -16.32637 -15.54259 -15.38651 -15.25020 -15.00228 -14.35896 -14.17977 -13.94555 -13.29220 -13.24269 -13.07698 -12.93927 -12.82607 -12.80647 -12.64484 -12.48597 -12.38910 -12.21176 -11.83727 -11.73814 -11.45253 -11.29508 -11.09473 -11.00893 -10.81322 -10.58902 -10.32976 -9.56168 -8.07440 -6.17356 1.34672 1.45738 1.46642 1.52859 1.92551 2.45720 2.92788 3.21098 3.35278 3.78893 3.82062 3.86008 3.92573 4.00642 4.19592 4.45794 4.58566 4.60971 4.65818 4.70861 4.80007 4.83040 4.88934 4.91372 4.92328 4.96810 5.06093 5.13895 5.27459 5.32817 5.34294 5.39494 5.51647 5.59711 5.68195 5.77749 5.92061 5.99308 6.38477 6.62931 6.92946 7.50307 7.52906 8.99923 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.007160 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.519691 B = 3909.541632 C = 4755.420890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.120 3.880 3 C -0.136 4.136 4 C -0.174 4.174 5 O -0.380 6.380 6 C 0.647 3.353 7 O -0.589 6.589 8 N -0.671 5.671 9 C 0.113 3.887 10 H 0.133 0.867 11 C -0.167 4.167 12 H 0.127 0.873 13 C -0.090 4.090 14 C -0.103 4.103 15 C 0.070 3.930 16 H 0.006 0.994 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.018 3.982 20 N -0.916 5.916 21 Si 0.944 3.056 22 H -0.269 1.269 23 H -0.292 1.292 24 H -0.272 1.272 25 C -0.137 4.137 26 H 0.128 0.872 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.414 0.586 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 1.889 -13.487 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.084 3.916 3 C -0.193 4.193 4 C -0.232 4.232 5 O -0.296 6.296 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.330 5.330 9 C 0.009 3.991 10 H 0.150 0.850 11 C -0.186 4.186 12 H 0.145 0.855 13 C -0.127 4.127 14 C -0.141 4.141 15 C 0.052 3.948 16 H 0.024 0.976 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.181 4.181 20 N -0.555 5.555 21 Si 0.771 3.229 22 H -0.194 1.194 23 H -0.218 1.218 24 H -0.198 1.198 25 C -0.156 4.156 26 H 0.146 0.854 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.254 0.746 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.945 1.841 -13.796 13.950 hybrid contribution 0.842 0.593 1.064 1.481 sum -0.103 2.435 -12.731 12.962 Atomic orbital electron populations 1.22448 0.94169 1.03665 1.03159 1.22438 0.94615 0.92759 0.81828 1.21890 1.02327 0.90982 1.04105 1.22435 1.01448 1.02285 0.96989 1.86347 1.71874 1.23635 1.47703 1.18157 0.78884 0.80583 0.82292 1.90809 1.42166 1.70880 1.44251 1.44582 1.54002 1.11859 1.22571 1.21680 0.98787 0.80944 0.97677 0.84984 1.23574 0.90470 1.01077 1.03520 0.85515 1.21842 0.97631 0.95775 0.97461 1.22498 0.96364 0.98240 0.97046 1.19349 0.94339 0.90213 0.90917 0.97598 1.21324 0.93296 1.19041 1.22242 0.92162 1.25683 0.99346 0.97082 0.96009 1.70086 1.30263 1.27737 1.27431 0.85820 0.81170 0.77930 0.78003 1.19411 1.21778 1.19762 1.24101 1.00600 1.00542 0.90316 0.85442 0.93046 0.88566 0.91887 0.91367 0.87316 0.92093 0.91816 0.88672 0.92153 0.74586 0.93889 0.91524 0.92938 0.94658 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.77 8.37 71.98 0.60 -4.16 16 2 C 0.12 3.29 1.13 -10.79 -0.01 3.27 16 3 C -0.14 -2.82 8.85 71.98 0.64 -2.18 16 4 C -0.17 -4.28 8.37 71.98 0.60 -3.68 16 5 O -0.38 -13.66 9.94 -55.50 -0.55 -14.21 16 6 C 0.65 24.86 7.88 129.79 1.02 25.88 16 7 O -0.59 -23.29 11.88 19.80 0.24 -23.06 16 8 N -0.67 -26.10 3.08 -570.12 -1.75 -27.86 16 9 C 0.11 4.04 5.95 44.99 0.27 4.31 16 10 H 0.13 4.14 8.14 -2.39 -0.02 4.12 16 11 C -0.17 -5.91 7.01 -10.09 -0.07 -5.98 16 12 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 13 C -0.09 -3.54 6.62 31.67 0.21 -3.33 16 14 C -0.10 -4.83 4.97 31.89 0.16 -4.67 16 15 C 0.07 3.34 2.61 -9.79 -0.03 3.31 16 16 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 17 C -0.52 -26.55 7.21 25.60 0.18 -26.37 16 18 H 0.06 2.98 7.78 -2.91 -0.02 2.96 16 19 C 0.02 0.97 5.33 84.65 0.45 1.42 16 20 N -0.92 -51.76 12.01 21.45 0.26 -51.50 16 21 Si 0.94 42.13 29.54 68.60 2.03 44.16 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.14 -5.19 6.56 -9.42 -0.06 -5.25 16 26 H 0.13 4.25 8.14 -2.39 -0.02 4.23 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 2.05 5.88 -2.39 -0.01 2.03 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.91 5.88 -2.39 -0.01 1.90 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.41 17.50 6.25 -92.71 -0.58 16.92 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.05 2.53 4.99 -2.38 -0.01 2.52 16 40 H 0.03 1.84 7.37 -2.39 -0.02 1.83 16 41 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -60.26 320.92 4.62 -55.64 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.44 Total: 34.25 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 3.97 Total: -17.42 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -1.50 Total: -79.36 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.32 Total: -37.26 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -60.26 4.62 -55.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714532281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.020 kcal (2) G-P(sol) polarization free energy of solvation -60.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds