Wall clock time and date at job start Mon Mar 30 2020 06:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.46497 * 119.99707 * 179.97438 * 8 6 5 10 10 H 1.09004 * 115.53149 * 9.09654 * 9 8 6 11 11 C 1.53008 * 117.45703 * 223.60371 * 9 8 6 12 12 H 1.09003 * 119.29309 * 140.15947 * 11 9 8 13 13 C 1.54269 * 118.20078 * 346.01812 * 11 9 8 14 14 C 1.54885 * 104.19118 * 272.21134 * 13 11 9 15 15 C 1.54887 * 102.75339 * 37.94035 * 14 13 11 16 16 H 1.09004 * 110.48731 * 80.73435 * 15 14 13 17 17 C 1.50702 * 110.48871 * 203.24270 * 15 14 13 18 18 H 1.08001 * 119.99309 * 118.54456 * 17 15 14 19 19 C 1.37874 * 120.00077 * 298.55086 * 17 15 14 20 20 N 1.31517 * 119.99926 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99898 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47026 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47131 * 119.99928 * 21 19 17 24 24 H 1.48498 * 109.46845 * 239.99661 * 21 19 17 25 25 C 1.53002 * 117.46083 * 154.56533 * 9 8 6 26 26 H 1.09003 * 119.29516 * 218.90250 * 25 9 8 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 0.97000 * 120.00566 * 359.97438 * 8 6 5 37 37 H 1.08992 * 110.48389 * 30.89038 * 13 11 9 38 38 H 1.08997 * 110.48616 * 153.53255 * 13 11 9 39 39 H 1.09002 * 110.75662 * 156.25939 * 14 13 11 40 40 H 1.08998 * 110.75694 * 279.44031 * 14 13 11 41 41 H 0.97004 * 119.99316 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 1.6732 -0.2041 -4.8135 10 1 1.1777 0.7661 -4.7774 11 6 1.2210 -1.1874 -5.8951 12 1 0.3796 -0.9249 -6.5364 13 6 1.5128 -2.6875 -5.6847 14 6 2.9296 -2.8857 -6.2784 15 6 3.6593 -1.5840 -5.8636 16 1 3.9999 -1.6502 -4.8303 17 6 4.8215 -1.3145 -6.7843 18 1 4.8415 -0.4132 -7.3790 19 6 5.8591 -2.2186 -6.8675 20 7 5.8348 -3.3159 -6.1431 21 14 7.3001 -1.8841 -8.0083 22 1 7.0885 -0.5910 -8.7070 23 1 8.5542 -1.8197 -7.2157 24 1 7.4028 -2.9762 -9.0093 25 6 2.5858 -0.4858 -6.0089 26 1 2.7596 0.3001 -6.7440 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 2.6268 -1.5520 -3.4786 37 1 1.5067 -2.9320 -4.6226 38 1 0.7856 -3.2966 -6.2215 39 1 3.4143 -3.7573 -5.8386 40 1 2.8843 -2.9774 -7.3636 41 1 6.5647 -3.9522 -6.2020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714532426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:23 Heat of formation + Delta-G solvation = -67.335904 kcal Electronic energy + Delta-G solvation = -21101.071198 eV Core-core repulsion = 17981.447614 eV Total energy + Delta-G solvation = -3119.623584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56870 -39.06582 -36.69840 -34.14301 -33.41929 -32.33554 -29.83641 -28.04319 -27.41989 -27.36353 -23.81262 -23.16495 -21.15359 -19.99599 -18.97191 -18.64609 -18.11833 -16.54081 -16.24996 -15.86818 -15.18284 -14.68528 -14.41720 -14.29874 -14.11326 -13.50937 -12.69596 -12.53337 -12.45994 -12.36445 -12.19224 -11.87852 -11.83546 -11.65382 -11.38363 -11.24390 -11.06539 -10.80167 -10.62011 -10.54445 -10.34250 -10.18518 -9.84292 -9.73313 -9.46950 -8.97682 -8.77415 -8.40016 -8.21323 -6.05062 -4.07094 2.44223 3.09427 3.28314 3.36791 3.40553 4.39127 4.41539 4.47181 4.73020 4.77365 4.91232 5.23728 5.32028 5.43031 5.50891 5.51123 5.52564 5.63395 5.66062 5.75298 5.86135 5.88088 5.95743 6.08562 6.29842 6.34377 6.35230 6.44891 6.53441 6.65591 6.76578 6.83901 6.94392 7.15972 7.28630 7.64896 7.76434 7.86382 7.95736 8.38705 8.71345 8.93835 9.56960 11.04382 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024320 B = 0.004701 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.018590 B = 5954.205281 C = 6401.869043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.184 4.184 4 C -0.141 4.141 5 O -0.365 6.365 6 C 0.652 3.348 7 O -0.580 6.580 8 N -0.670 5.670 9 C 0.100 3.900 10 H 0.133 0.867 11 C -0.184 4.184 12 H 0.103 0.897 13 C -0.102 4.102 14 C -0.099 4.099 15 C 0.074 3.926 16 H 0.031 0.969 17 C -0.510 4.510 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.136 4.136 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.413 0.587 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 3.805 10.551 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.241 4.241 4 C -0.198 4.198 5 O -0.280 6.280 6 C 0.406 3.594 7 O -0.471 6.471 8 N -0.327 5.327 9 C -0.004 4.004 10 H 0.150 0.850 11 C -0.204 4.204 12 H 0.121 0.879 13 C -0.140 4.140 14 C -0.137 4.137 15 C 0.055 3.945 16 H 0.049 0.951 17 C -0.548 4.548 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.155 4.155 26 H 0.125 0.875 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.250 0.750 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.186 4.125 10.662 14.665 hybrid contribution 1.012 -0.216 -0.630 1.211 sum -8.174 3.909 10.032 13.518 Atomic orbital electron populations 1.22512 0.94242 1.02803 1.04415 1.21992 0.94188 0.92197 0.81712 1.22515 1.01687 0.95477 1.04389 1.21855 1.02385 1.01054 0.94508 1.86329 1.71656 1.56302 1.13709 1.18031 0.78770 0.81575 0.81058 1.90830 1.42005 1.27169 1.87055 1.44237 1.53722 1.32434 1.02308 1.21862 1.03769 0.97391 0.77396 0.84970 1.23824 0.99757 0.94462 1.02310 0.87871 1.22056 0.99456 0.92511 0.99953 1.22634 0.90634 1.00872 0.99522 1.19069 0.90698 0.87785 0.96941 0.95122 1.21131 1.03681 1.05878 1.24143 0.92465 1.24953 0.98090 0.95144 0.95743 1.69955 1.32414 1.10296 1.40212 0.86556 0.82562 0.78247 0.80763 1.19790 1.21090 1.21086 1.24245 0.92787 1.01348 0.97111 0.87503 0.89280 0.91461 0.92286 0.91477 0.92120 0.89261 0.91522 0.91403 0.90399 0.74963 0.92871 0.92792 0.90957 0.92951 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.37 37.16 0.31 -1.88 16 2 C 0.14 1.75 1.13 -90.62 -0.10 1.64 16 3 C -0.18 -2.28 8.37 37.15 0.31 -1.97 16 4 C -0.14 -1.39 8.85 37.16 0.33 -1.06 16 5 O -0.37 -5.87 9.94 -40.33 -0.40 -6.28 16 6 C 0.65 11.54 8.06 54.06 0.44 11.97 16 7 O -0.58 -10.80 11.45 -19.28 -0.22 -11.02 16 8 N -0.67 -12.02 4.80 -58.72 -0.28 -12.30 16 9 C 0.10 1.79 6.36 -67.93 -0.43 1.36 16 10 H 0.13 2.29 7.40 -51.93 -0.38 1.91 16 11 C -0.18 -3.22 6.94 -89.50 -0.62 -3.84 16 12 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 13 C -0.10 -1.86 6.32 -25.07 -0.16 -2.02 16 14 C -0.10 -2.18 5.61 -24.74 -0.14 -2.32 16 15 C 0.07 1.73 2.26 -90.12 -0.20 1.52 16 16 H 0.03 0.77 6.60 -51.93 -0.34 0.43 16 17 C -0.51 -13.53 8.59 -34.44 -0.30 -13.83 16 18 H 0.06 1.51 7.62 -52.49 -0.40 1.11 16 19 C 0.06 1.68 5.33 -17.82 -0.09 1.58 16 20 N -0.89 -24.70 12.00 55.43 0.67 -24.03 16 21 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.14 -2.70 6.34 -89.50 -0.57 -3.26 16 26 H 0.11 2.10 7.93 -51.93 -0.41 1.69 16 27 H 0.09 1.28 5.88 -51.93 -0.31 0.98 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.41 7.57 6.24 -40.82 -0.25 7.31 16 37 H 0.05 0.94 6.98 -51.93 -0.36 0.58 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.74 7.36 -51.93 -0.38 1.36 16 40 H 0.05 1.21 8.06 -51.93 -0.42 0.79 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -28.27 323.11 -8.12 -36.39 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.51 Total: 8.59 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.23 Total: -12.11 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.38 Total: -36.33 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.62 Total: -17.29 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.27 -8.12 -36.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714532426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.946 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds