Wall clock time and date at job start Mon Mar 30 2020 06:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.46497 * 119.99707 * 179.97438 * 8 6 5 10 10 H 1.09004 * 115.53149 * 9.09654 * 9 8 6 11 11 C 1.53008 * 117.45703 * 223.60371 * 9 8 6 12 12 H 1.09003 * 119.29309 * 140.15947 * 11 9 8 13 13 C 1.54269 * 118.20078 * 346.01812 * 11 9 8 14 14 C 1.54885 * 104.19118 * 272.21134 * 13 11 9 15 15 C 1.54887 * 102.75339 * 37.94035 * 14 13 11 16 16 H 1.09004 * 110.48731 * 80.73435 * 15 14 13 17 17 C 1.50702 * 110.48871 * 203.24270 * 15 14 13 18 18 H 1.08001 * 119.99309 * 118.54456 * 17 15 14 19 19 C 1.37874 * 120.00077 * 298.55086 * 17 15 14 20 20 N 1.31517 * 119.99926 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99898 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47026 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47131 * 119.99928 * 21 19 17 24 24 H 1.48498 * 109.46845 * 239.99661 * 21 19 17 25 25 C 1.53002 * 117.46083 * 154.56533 * 9 8 6 26 26 H 1.09003 * 119.29516 * 218.90250 * 25 9 8 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 0.97000 * 120.00566 * 359.97438 * 8 6 5 37 37 H 1.08992 * 110.48389 * 30.89038 * 13 11 9 38 38 H 1.08997 * 110.48616 * 153.53255 * 13 11 9 39 39 H 1.09002 * 110.75662 * 156.25939 * 14 13 11 40 40 H 1.08998 * 110.75694 * 279.44031 * 14 13 11 41 41 H 0.97004 * 119.99316 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 1.6732 -0.2041 -4.8135 10 1 1.1777 0.7661 -4.7774 11 6 1.2210 -1.1874 -5.8951 12 1 0.3796 -0.9249 -6.5364 13 6 1.5128 -2.6875 -5.6847 14 6 2.9296 -2.8857 -6.2784 15 6 3.6593 -1.5840 -5.8636 16 1 3.9999 -1.6502 -4.8303 17 6 4.8215 -1.3145 -6.7843 18 1 4.8415 -0.4132 -7.3790 19 6 5.8591 -2.2186 -6.8675 20 7 5.8348 -3.3159 -6.1431 21 14 7.3001 -1.8841 -8.0083 22 1 7.0885 -0.5910 -8.7070 23 1 8.5542 -1.8197 -7.2157 24 1 7.4028 -2.9762 -9.0093 25 6 2.5858 -0.4858 -6.0089 26 1 2.7596 0.3001 -6.7440 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 2.6268 -1.5520 -3.4786 37 1 1.5067 -2.9320 -4.6226 38 1 0.7856 -3.2966 -6.2215 39 1 3.4143 -3.7573 -5.8386 40 1 2.8843 -2.9774 -7.3636 41 1 6.5647 -3.9522 -6.2020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714532426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:22 Heat of formation + Delta-G solvation = -83.000985 kcal Electronic energy + Delta-G solvation = -21101.750487 eV Core-core repulsion = 17981.447614 eV Total energy + Delta-G solvation = -3120.302872 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.87775 -40.54449 -37.97945 -35.49196 -35.00450 -33.94950 -31.47234 -29.84434 -28.32351 -28.26573 -25.73487 -24.49055 -22.72058 -21.19105 -20.48073 -20.29733 -19.44482 -18.34092 -17.56405 -17.14381 -16.74767 -16.24794 -16.10337 -15.49552 -15.32535 -14.59606 -14.34985 -14.09241 -13.96224 -13.40474 -13.29056 -13.11713 -12.97583 -12.86349 -12.83471 -12.70175 -12.57986 -12.37264 -12.29736 -12.11595 -11.83813 -11.45145 -11.35992 -11.31186 -11.05635 -10.82259 -10.54294 -10.32234 -9.68104 -8.10756 -6.18679 1.19601 1.40560 1.43499 1.53748 1.71614 2.44614 2.95222 3.14297 3.24229 3.75779 3.79401 3.83752 3.98156 3.98494 4.05426 4.46211 4.47807 4.63504 4.65201 4.70506 4.79587 4.81708 4.87277 4.90576 4.91344 5.00165 5.06530 5.15423 5.20230 5.31788 5.32567 5.39885 5.50126 5.54304 5.60932 5.70088 5.89607 5.99841 6.39689 6.43668 6.89420 7.34703 7.48157 8.97697 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024320 B = 0.004701 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.018590 B = 5954.205281 C = 6401.869043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.120 3.880 3 C -0.180 4.180 4 C -0.136 4.136 5 O -0.375 6.375 6 C 0.652 3.348 7 O -0.590 6.590 8 N -0.675 5.675 9 C 0.111 3.889 10 H 0.143 0.857 11 C -0.162 4.162 12 H 0.134 0.866 13 C -0.093 4.093 14 C -0.092 4.092 15 C 0.069 3.931 16 H 0.007 0.993 17 C -0.528 4.528 18 H 0.052 0.948 19 C 0.015 3.985 20 N -0.916 5.916 21 Si 0.949 3.051 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.281 1.281 25 C -0.157 4.157 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.409 0.591 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 4.316 11.385 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.084 3.916 3 C -0.237 4.237 4 C -0.193 4.193 5 O -0.290 6.290 6 C 0.406 3.594 7 O -0.482 6.482 8 N -0.332 5.332 9 C 0.007 3.993 10 H 0.160 0.840 11 C -0.182 4.182 12 H 0.151 0.849 13 C -0.131 4.131 14 C -0.130 4.130 15 C 0.051 3.949 16 H 0.025 0.975 17 C -0.566 4.566 18 H 0.070 0.930 19 C -0.184 4.184 20 N -0.556 5.556 21 Si 0.776 3.224 22 H -0.193 1.193 23 H -0.209 1.209 24 H -0.207 1.207 25 C -0.176 4.176 26 H 0.125 0.875 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.246 0.754 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.331 4.645 11.506 16.146 hybrid contribution 1.377 -0.351 -0.815 1.638 sum -8.954 4.294 10.691 14.592 Atomic orbital electron populations 1.22459 0.93507 1.02973 1.04498 1.22490 0.95007 0.92651 0.81413 1.22479 1.01388 0.95359 1.04496 1.21898 1.02228 1.01274 0.93912 1.86347 1.71775 1.56855 1.13975 1.18084 0.78551 0.81336 0.81448 1.90830 1.42444 1.27539 1.87360 1.44278 1.53860 1.32356 1.02679 1.21856 1.02370 0.98033 0.77050 0.83992 1.23918 0.98886 0.93515 1.01875 0.84867 1.21956 0.97267 0.93609 1.00239 1.22415 0.93035 0.99137 0.98410 1.18972 0.91172 0.89934 0.94864 0.97510 1.21520 1.05028 1.05611 1.24483 0.93008 1.25661 1.00474 0.95073 0.97148 1.70068 1.33090 1.10984 1.41455 0.85635 0.79569 0.78208 0.79021 1.19290 1.20944 1.20691 1.23999 0.93061 1.01354 0.99207 0.87473 0.91887 0.88610 0.92042 0.88504 0.92540 0.91948 0.91282 0.91717 0.87372 0.75421 0.92435 0.90347 0.93610 0.94455 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 8.37 71.98 0.60 -3.32 16 2 C 0.12 2.90 1.13 -10.79 -0.01 2.89 16 3 C -0.18 -4.24 8.37 71.98 0.60 -3.64 16 4 C -0.14 -2.36 8.85 71.98 0.64 -1.72 16 5 O -0.37 -11.88 9.94 -55.53 -0.55 -12.43 16 6 C 0.65 22.86 8.06 129.79 1.05 23.90 16 7 O -0.59 -21.72 11.45 19.82 0.23 -21.50 16 8 N -0.68 -24.08 4.80 -570.11 -2.74 -26.82 16 9 C 0.11 3.87 6.36 45.00 0.29 4.15 16 10 H 0.14 4.70 7.40 -2.38 -0.02 4.68 16 11 C -0.16 -5.37 6.94 -10.07 -0.07 -5.44 16 12 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 13 C -0.09 -3.26 6.32 31.67 0.20 -3.06 16 14 C -0.09 -4.12 5.61 31.88 0.18 -3.94 16 15 C 0.07 3.31 2.26 -10.47 -0.02 3.29 16 16 H 0.01 0.36 6.60 -2.38 -0.02 0.35 16 17 C -0.53 -28.58 8.59 25.60 0.22 -28.36 16 18 H 0.05 2.78 7.62 -2.91 -0.02 2.76 16 19 C 0.02 0.83 5.33 84.65 0.45 1.29 16 20 N -0.92 -52.04 12.00 21.45 0.26 -51.78 16 21 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 C -0.16 -6.19 6.34 -10.07 -0.06 -6.25 16 26 H 0.11 4.19 7.93 -2.39 -0.02 4.17 16 27 H 0.06 1.75 5.88 -2.39 -0.01 1.74 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.82 5.88 -2.39 -0.01 1.81 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.41 15.21 6.24 -92.71 -0.58 14.63 16 37 H 0.06 1.98 6.98 -2.39 -0.02 1.96 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.05 2.26 7.36 -2.39 -0.02 2.25 16 40 H 0.04 1.74 8.06 -2.39 -0.02 1.72 16 41 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -61.62 323.11 3.72 -57.90 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.44 Total: 29.45 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 4.05 Total: -20.21 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -2.48 Total: -78.60 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.33 Total: -33.93 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -61.62 3.72 -57.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714532426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.096 kcal (2) G-P(sol) polarization free energy of solvation -61.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds