Wall clock time and date at job start Mon Mar 30 2020 06:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48507 * 109.47116 * 240.00156 * 3 2 1 5 5 H 1.48498 * 109.47383 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47445 * 120.00009 * 3 2 1 7 7 C 1.37865 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00369 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47560 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47074 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46726 * 179.97438 * 11 10 9 13 13 C 1.46899 * 110.99814 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47340 * 180.02562 * 13 12 11 15 15 H 1.08994 * 109.40460 * 304.89941 * 14 13 12 16 16 C 1.53080 * 109.44045 * 184.99837 * 14 13 12 17 17 C 1.53350 * 109.08593 * 180.52462 * 16 14 13 18 18 C 1.52852 * 108.74846 * 54.86270 * 17 16 14 19 19 C 1.53347 * 113.55510 * 77.76016 * 18 17 16 20 20 C 1.53863 * 87.04471 * 89.55803 * 19 18 17 21 21 C 1.53512 * 113.58214 * 175.67128 * 18 17 16 22 22 C 1.52750 * 112.67461 * 306.79073 * 18 17 16 23 23 O 1.42870 * 109.43657 * 64.79075 * 14 13 12 24 24 H 0.96996 * 119.99702 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46852 * 59.99745 * 9 7 2 26 26 H 1.09003 * 109.46638 * 299.99837 * 9 7 2 27 27 H 1.08998 * 109.46908 * 59.99584 * 10 9 7 28 28 H 1.08996 * 109.46971 * 300.00006 * 10 9 7 29 29 H 1.09001 * 109.46924 * 60.00045 * 11 10 9 30 30 H 1.08996 * 109.47397 * 299.99954 * 11 10 9 31 31 H 1.00894 * 111.00355 * 303.95487 * 12 11 10 32 32 H 1.08999 * 109.47419 * 59.99917 * 13 12 11 33 33 H 1.09001 * 109.47266 * 300.00444 * 13 12 11 34 34 H 1.09000 * 109.52828 * 60.64277 * 16 14 13 35 35 H 1.08994 * 109.60134 * 300.44658 * 16 14 13 36 36 H 1.08997 * 109.59265 * 295.08362 * 17 16 14 37 37 H 1.08995 * 109.71008 * 174.71240 * 17 16 14 38 38 H 1.09002 * 113.63856 * 335.00042 * 19 18 17 39 39 H 1.09004 * 113.63401 * 204.11697 * 19 18 17 40 40 H 1.09005 * 113.59734 * 139.63022 * 20 19 18 41 41 H 1.08993 * 113.60475 * 270.49823 * 20 19 18 42 42 H 1.08992 * 113.55505 * 155.94350 * 21 18 17 43 43 H 1.09003 * 113.76740 * 25.01098 * 21 18 17 44 44 H 1.09001 * 109.52800 * 173.52311 * 22 18 17 45 45 H 1.09002 * 109.52615 * 293.72068 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0006 13 6 1.7346 -7.3949 0.0005 14 6 2.7595 -8.5309 0.0005 15 1 3.4388 -8.4058 -0.8426 16 6 2.0330 -9.8725 -0.1253 17 6 3.0663 -11.0055 -0.1112 18 6 3.9238 -10.8728 1.1472 19 6 3.2288 -11.3756 2.4182 20 6 3.8282 -12.7573 2.1037 21 6 4.9312 -12.0171 1.3273 22 6 4.5402 -9.4831 1.2959 23 8 3.5040 -8.4995 1.2195 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5566 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8894 29 1 0.8533 -5.0450 -0.8886 30 1 0.8539 -5.0446 0.8913 31 1 3.0692 -6.0366 -0.7812 32 1 1.1094 -7.4692 -0.8892 33 1 1.1100 -7.4696 0.8907 34 1 1.4759 -9.8988 -1.0618 35 1 1.3455 -9.9959 0.7114 36 1 3.7004 -10.9329 -0.9948 37 1 2.5559 -11.9685 -0.1058 38 1 2.1406 -11.3481 2.3613 39 1 3.6164 -10.9292 3.3340 40 1 4.1937 -13.2852 2.9846 41 1 3.1906 -13.3763 1.4726 42 1 5.7914 -11.7477 1.9401 43 1 5.2122 -12.5060 0.3945 44 1 5.0428 -9.4087 2.2603 45 1 5.2605 -9.3164 0.4949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716544386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:42 Heat of formation + Delta-G solvation = -53.897672 kcal Electronic energy + Delta-G solvation = -20286.526758 eV Core-core repulsion = 17303.318994 eV Total energy + Delta-G solvation = -2983.207764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72431 -37.78700 -35.99726 -33.65878 -32.86638 -31.33924 -29.51247 -27.13594 -25.99561 -25.48184 -23.76283 -22.58501 -21.84879 -21.21924 -19.96774 -18.51074 -16.78357 -16.25828 -15.95107 -15.84942 -15.36048 -14.83184 -14.54189 -14.35136 -14.11837 -13.72713 -13.32365 -13.12002 -12.87927 -12.64624 -12.56968 -12.16332 -11.69187 -11.60033 -11.39344 -11.35362 -11.24718 -11.12736 -10.77522 -10.66386 -10.51483 -10.47938 -10.43936 -10.17231 -9.62180 -9.36162 -9.22488 -8.99901 -8.28988 -8.04210 -5.94429 -3.96291 3.37539 3.41232 3.44363 3.66637 4.20184 4.27271 4.30533 4.38660 4.51510 4.53899 4.76244 4.86612 4.91801 5.04899 5.18482 5.29383 5.36566 5.40610 5.41149 5.44603 5.47674 5.51411 5.55652 5.60393 5.68979 5.72452 5.74125 5.88560 5.92301 5.99192 6.04682 6.11515 6.18154 6.39793 6.79832 6.84241 7.20728 7.25156 7.44144 7.72119 7.74999 7.90617 8.06519 8.50041 9.10797 9.67304 11.17081 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.002580 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.108335 B =10852.072152 C =11092.573437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.683 5.683 13 C 0.065 3.935 14 C 0.096 3.904 15 H 0.053 0.947 16 C -0.149 4.149 17 C -0.095 4.095 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.130 4.130 22 C 0.076 3.924 23 O -0.355 6.355 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.022 0.978 30 H 0.067 0.933 31 H 0.335 0.665 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.888 -27.131 0.537 27.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.313 5.313 13 C -0.064 4.064 14 C 0.038 3.962 15 H 0.071 0.929 16 C -0.187 4.187 17 C -0.132 4.132 18 C -0.119 4.119 19 C -0.160 4.160 20 C -0.180 4.180 21 C -0.168 4.168 22 C -0.001 4.001 23 O -0.273 6.273 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.765 -26.858 1.374 27.731 hybrid contribution 0.138 0.659 -1.162 1.343 sum 6.904 -26.199 0.212 27.094 Atomic orbital electron populations 1.69962 1.06050 1.26610 1.51087 1.25033 0.94861 0.99246 0.95445 0.86650 0.79557 0.83124 0.78614 1.20297 1.21345 1.20210 1.21233 0.93035 0.91093 1.50269 0.92723 1.19067 0.94037 0.91392 0.97073 1.21613 0.99147 0.92954 1.00720 1.22128 0.94090 0.90892 0.99770 1.60464 1.20194 1.01029 1.49655 1.21957 0.94737 0.88706 1.01031 1.22055 0.92956 0.93632 0.87592 0.92900 1.22188 0.98647 0.94987 1.02865 1.21335 0.96974 0.98735 0.96157 1.22266 0.97476 0.95768 0.96357 1.22843 1.00303 0.95698 0.97190 1.22861 0.98250 0.96680 1.00220 1.22887 0.96794 0.96513 1.00591 1.22504 0.89694 0.86105 1.01819 1.88123 1.47461 1.54240 1.37471 0.93024 0.96868 0.96566 0.92499 0.93747 0.95980 0.91481 0.84822 0.94272 0.90370 0.90935 0.90801 0.91680 0.91381 0.91442 0.89939 0.91586 0.90392 0.89968 0.91467 0.89024 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.31 5.41 -26.73 -0.14 -2.45 16 11 C 0.06 1.09 5.69 -3.82 -0.02 1.07 16 12 N -0.68 -10.79 6.45 -113.78 -0.73 -11.52 16 13 C 0.07 0.85 5.35 -3.83 -0.02 0.83 16 14 C 0.10 1.09 2.76 -26.69 -0.07 1.02 16 15 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 16 C -0.15 -1.34 5.35 -26.51 -0.14 -1.48 16 17 C -0.09 -0.75 5.11 -26.63 -0.14 -0.88 16 18 C -0.12 -0.97 0.86 -154.27 -0.13 -1.10 16 19 C -0.12 -1.00 7.12 -26.10 -0.19 -1.18 16 20 C -0.14 -0.95 7.74 -25.83 -0.20 -1.15 16 21 C -0.13 -0.89 7.24 -26.02 -0.19 -1.07 16 22 C 0.08 0.76 6.02 37.03 0.22 0.98 16 23 O -0.35 -4.66 10.36 -35.23 -0.36 -5.02 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.33 4.92 8.73 -39.30 -0.34 4.58 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.48 7.35 -51.93 -0.38 0.10 16 38 H 0.07 0.58 7.62 -51.93 -0.40 0.18 16 39 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.49 7.65 -51.93 -0.40 0.09 16 42 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 43 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 44 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -31.29 352.33 -10.27 -41.56 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.63 Total: -1.68 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -1.57 Total: -18.93 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.00 Total: -38.40 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.36 Total: -5.02 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.29 -10.27 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716544386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.333 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds