Wall clock time and date at job start Mon Mar 30 2020 06:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48507 * 109.47116 * 240.00156 * 3 2 1 5 5 H 1.48498 * 109.47383 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47445 * 120.00009 * 3 2 1 7 7 C 1.37865 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00369 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47560 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47074 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46726 * 179.97438 * 11 10 9 13 13 C 1.46899 * 110.99814 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47340 * 180.02562 * 13 12 11 15 15 H 1.08994 * 109.40460 * 304.89941 * 14 13 12 16 16 C 1.53080 * 109.44045 * 184.99837 * 14 13 12 17 17 C 1.53350 * 109.08593 * 180.52462 * 16 14 13 18 18 C 1.52852 * 108.74846 * 54.86270 * 17 16 14 19 19 C 1.53347 * 113.55510 * 77.76016 * 18 17 16 20 20 C 1.53863 * 87.04471 * 89.55803 * 19 18 17 21 21 C 1.53512 * 113.58214 * 175.67128 * 18 17 16 22 22 C 1.52750 * 112.67461 * 306.79073 * 18 17 16 23 23 O 1.42870 * 109.43657 * 64.79075 * 14 13 12 24 24 H 0.96996 * 119.99702 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46852 * 59.99745 * 9 7 2 26 26 H 1.09003 * 109.46638 * 299.99837 * 9 7 2 27 27 H 1.08998 * 109.46908 * 59.99584 * 10 9 7 28 28 H 1.08996 * 109.46971 * 300.00006 * 10 9 7 29 29 H 1.09001 * 109.46924 * 60.00045 * 11 10 9 30 30 H 1.08996 * 109.47397 * 299.99954 * 11 10 9 31 31 H 1.00894 * 111.00355 * 303.95487 * 12 11 10 32 32 H 1.08999 * 109.47419 * 59.99917 * 13 12 11 33 33 H 1.09001 * 109.47266 * 300.00444 * 13 12 11 34 34 H 1.09000 * 109.52828 * 60.64277 * 16 14 13 35 35 H 1.08994 * 109.60134 * 300.44658 * 16 14 13 36 36 H 1.08997 * 109.59265 * 295.08362 * 17 16 14 37 37 H 1.08995 * 109.71008 * 174.71240 * 17 16 14 38 38 H 1.09002 * 113.63856 * 335.00042 * 19 18 17 39 39 H 1.09004 * 113.63401 * 204.11697 * 19 18 17 40 40 H 1.09005 * 113.59734 * 139.63022 * 20 19 18 41 41 H 1.08993 * 113.60475 * 270.49823 * 20 19 18 42 42 H 1.08992 * 113.55505 * 155.94350 * 21 18 17 43 43 H 1.09003 * 113.76740 * 25.01098 * 21 18 17 44 44 H 1.09001 * 109.52800 * 173.52311 * 22 18 17 45 45 H 1.09002 * 109.52615 * 293.72068 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0006 13 6 1.7346 -7.3949 0.0005 14 6 2.7595 -8.5309 0.0005 15 1 3.4388 -8.4058 -0.8426 16 6 2.0330 -9.8725 -0.1253 17 6 3.0663 -11.0055 -0.1112 18 6 3.9238 -10.8728 1.1472 19 6 3.2288 -11.3756 2.4182 20 6 3.8282 -12.7573 2.1037 21 6 4.9312 -12.0171 1.3273 22 6 4.5402 -9.4831 1.2959 23 8 3.5040 -8.4995 1.2195 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5566 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8894 29 1 0.8533 -5.0450 -0.8886 30 1 0.8539 -5.0446 0.8913 31 1 3.0692 -6.0366 -0.7812 32 1 1.1094 -7.4692 -0.8892 33 1 1.1100 -7.4696 0.8907 34 1 1.4759 -9.8988 -1.0618 35 1 1.3455 -9.9959 0.7114 36 1 3.7004 -10.9329 -0.9948 37 1 2.5559 -11.9685 -0.1058 38 1 2.1406 -11.3481 2.3613 39 1 3.6164 -10.9292 3.3340 40 1 4.1937 -13.2852 2.9846 41 1 3.1906 -13.3763 1.4726 42 1 5.7914 -11.7477 1.9401 43 1 5.2122 -12.5060 0.3945 44 1 5.0428 -9.4087 2.2603 45 1 5.2605 -9.3164 0.4949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716544386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:42 Heat of formation + Delta-G solvation = -72.806897 kcal Electronic energy + Delta-G solvation = -20287.346723 eV Core-core repulsion = 17303.318994 eV Total energy + Delta-G solvation = -2984.027729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41355 -38.67691 -37.34304 -35.47818 -33.98851 -32.93808 -30.59512 -28.49049 -26.91879 -26.55744 -24.82107 -23.88597 -22.99576 -22.17227 -21.61547 -19.17905 -18.47686 -17.66853 -16.81900 -16.57511 -16.55376 -16.40601 -15.91724 -15.50887 -15.02222 -14.85425 -14.51403 -14.16560 -14.07797 -13.80125 -13.54509 -13.30342 -13.18687 -13.08734 -12.63417 -12.51797 -12.36956 -12.29131 -12.03826 -12.01568 -11.84500 -11.54038 -11.41139 -11.36154 -11.11250 -11.04983 -10.84838 -10.54907 -10.08669 -9.31576 -8.19973 -6.31274 1.39843 1.43593 1.51502 2.41315 2.85414 3.12744 3.16383 3.64686 3.67557 3.70197 3.93919 4.01225 4.08099 4.14946 4.21220 4.28905 4.35642 4.50839 4.53983 4.59679 4.69897 4.72065 4.74616 4.79897 4.86802 4.88017 4.93216 4.99236 5.06209 5.07744 5.09646 5.11938 5.18926 5.24096 5.35138 5.47443 5.51587 5.59793 5.74839 5.85558 6.05101 6.27123 6.40720 6.54410 6.85221 7.37788 8.91884 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.002580 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.108335 B =10852.072152 C =11092.573437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.073 3.927 12 N -0.689 5.689 13 C 0.065 3.935 14 C 0.098 3.902 15 H 0.058 0.942 16 C -0.143 4.143 17 C -0.092 4.092 18 C -0.119 4.119 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.125 4.125 22 C 0.071 3.929 23 O -0.386 6.386 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.010 1.010 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.342 0.658 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -28.177 -0.122 29.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.056 4.056 12 N -0.321 5.321 13 C -0.064 4.064 14 C 0.040 3.960 15 H 0.076 0.924 16 C -0.182 4.182 17 C -0.129 4.129 18 C -0.120 4.120 19 C -0.167 4.167 20 C -0.173 4.173 21 C -0.162 4.162 22 C -0.005 4.005 23 O -0.305 6.305 24 H 0.073 0.927 25 H 0.011 0.989 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.032 -27.932 0.712 29.072 hybrid contribution -0.270 0.969 -0.931 1.371 sum 7.761 -26.963 -0.220 28.058 Atomic orbital electron populations 1.70096 1.07811 1.27868 1.51662 1.26018 0.95836 1.03473 0.94686 0.85470 0.78257 0.77912 0.79223 1.19038 1.20685 1.19239 1.21672 0.93535 0.92435 1.50616 0.92285 1.18971 0.94411 0.93103 0.94742 1.21364 0.98005 0.92975 1.00606 1.21822 0.93933 0.90270 0.99558 1.60370 1.19997 1.01390 1.50306 1.22024 0.95285 0.87875 1.01206 1.22058 0.92676 0.94038 0.87240 0.92398 1.22139 0.98722 0.94026 1.03276 1.21343 0.96721 0.98730 0.96143 1.22277 0.98063 0.95051 0.96586 1.22864 0.99872 0.96963 0.96985 1.22843 0.98004 0.95911 1.00546 1.22876 0.96629 0.95640 1.01084 1.22643 0.89254 0.86632 1.02012 1.88069 1.48410 1.55637 1.38352 0.92731 0.98920 0.99170 0.93277 0.92988 0.95563 0.92419 0.83958 0.92653 0.91518 0.89520 0.91548 0.90996 0.90142 0.92181 0.90662 0.90972 0.89644 0.89631 0.90577 0.88998 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.25 13.29 21.44 0.28 -57.97 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -32.21 9.11 25.60 0.23 -31.98 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -4.01 5.41 30.60 0.17 -3.84 16 11 C 0.07 2.68 5.69 86.30 0.49 3.17 16 12 N -0.69 -21.33 6.45 -513.90 -3.31 -24.64 16 13 C 0.07 1.65 5.35 86.30 0.46 2.11 16 14 C 0.10 2.11 2.76 30.62 0.08 2.19 16 15 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 16 C -0.14 -2.35 5.35 30.74 0.16 -2.18 16 17 C -0.09 -1.25 5.11 30.66 0.16 -1.10 16 18 C -0.12 -1.78 0.86 -52.03 -0.04 -1.83 16 19 C -0.13 -1.97 7.12 31.00 0.22 -1.75 16 20 C -0.14 -1.54 7.74 31.18 0.24 -1.30 16 21 C -0.12 -1.44 7.24 31.06 0.22 -1.21 16 22 C 0.07 1.36 6.02 71.90 0.43 1.80 16 23 O -0.39 -9.94 10.36 -148.98 -1.54 -11.48 16 24 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.34 9.68 8.73 -89.70 -0.78 8.90 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.19 7.67 -2.39 -0.02 1.17 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.92 7.35 -2.39 -0.02 0.90 16 38 H 0.06 0.99 7.62 -2.39 -0.02 0.97 16 39 H 0.07 1.23 8.03 -2.38 -0.02 1.21 16 40 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.08 0.86 7.65 -2.39 -0.02 0.84 16 42 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 43 H 0.08 0.76 8.10 -2.39 -0.02 0.74 16 44 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 45 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -67.00 352.33 1.04 -65.96 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.14 Total: 14.83 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.44 Total: -34.05 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -3.03 Total: -82.61 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -1.54 Total: -11.48 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.00 1.04 -65.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716544386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.845 kcal (2) G-P(sol) polarization free energy of solvation -67.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds