Wall clock time and date at job start Mon Mar 30 2020 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00064 * 180.02562 * 12 11 10 14 14 C 1.52990 * 109.46964 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.47127 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.84688 * 54.29777 * 15 14 13 17 17 C 1.54164 * 109.85602 * 175.24470 * 15 14 13 18 18 C 1.55002 * 104.26652 * 121.24287 * 17 15 14 19 19 C 1.53899 * 101.92073 * 19.78799 * 18 17 15 20 20 C 1.52640 * 115.55517 * 195.01232 * 19 18 17 21 21 C 1.53989 * 86.73812 * 217.58255 * 20 19 18 22 22 C 1.52647 * 115.54126 * 93.99502 * 19 18 17 23 23 O 1.43264 * 105.18834 * 324.58189 * 19 18 17 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 30 30 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 31 31 H 1.00902 * 111.00046 * 56.04586 * 12 11 10 32 32 H 1.09006 * 109.46752 * 299.99739 * 13 12 11 33 33 H 1.08997 * 109.47048 * 59.99621 * 13 12 11 34 34 H 1.09006 * 109.46966 * 299.99355 * 14 13 12 35 35 H 1.08997 * 109.47754 * 59.99801 * 14 13 12 36 36 H 1.09003 * 110.47678 * 239.94130 * 17 15 14 37 37 H 1.08997 * 110.47636 * 2.54734 * 17 15 14 38 38 H 1.08999 * 110.93997 * 137.94431 * 18 17 15 39 39 H 1.09006 * 110.94011 * 261.63375 * 18 17 15 40 40 H 1.08998 * 113.66935 * 332.03904 * 20 19 18 41 41 H 1.08999 * 113.66791 * 103.12026 * 20 19 18 42 42 H 1.09000 * 113.57585 * 269.98518 * 21 20 19 43 43 H 1.08992 * 113.65506 * 139.19779 * 21 20 19 44 44 H 1.09001 * 113.66642 * 256.88688 * 22 19 18 45 45 H 1.09000 * 113.67175 * 27.96957 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 1.7347 -7.3950 0.0018 14 6 2.7596 -8.5309 0.0031 15 6 2.0303 -9.8759 0.0038 16 1 1.3283 -9.9166 -0.8291 17 6 3.0510 -11.0251 -0.1151 18 6 2.8157 -11.8781 1.1575 19 6 1.4006 -11.4413 1.5759 20 6 0.9865 -11.8221 2.9948 21 6 -0.4182 -12.0834 2.4205 22 6 0.2618 -12.3165 1.0587 23 8 1.3249 -10.0490 1.2468 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8906 29 1 0.8540 -5.0446 0.8914 30 1 0.8534 -5.0451 -0.8886 31 1 3.0698 -6.0362 0.7832 32 1 1.1095 -7.4692 0.8917 33 1 1.1101 -7.4696 -0.8883 34 1 3.3851 -8.4568 -0.8865 35 1 3.3839 -8.4561 0.8935 36 1 2.8579 -11.6155 -1.0109 37 1 4.0676 -10.6323 -0.1282 38 1 2.8416 -12.9424 0.9234 39 1 3.5437 -11.6330 1.9309 40 1 1.4800 -12.7190 3.3689 41 1 1.0236 -10.9912 3.6993 42 1 -1.0669 -11.2076 2.4398 43 1 -0.8979 -12.9739 2.8265 44 1 -0.2790 -11.8797 0.2191 45 1 0.5505 -13.3531 0.8855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717000615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:29 Heat of formation + Delta-G solvation = -55.949726 kcal Electronic energy + Delta-G solvation = -20004.028746 eV Core-core repulsion = 17020.731999 eV Total energy + Delta-G solvation = -2983.296747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86614 -37.33890 -36.20513 -33.99682 -32.67708 -31.91408 -30.03409 -26.98173 -26.10970 -25.06671 -23.19027 -22.28388 -21.67831 -21.28103 -20.24071 -19.54422 -16.69857 -16.56658 -16.19625 -15.79360 -15.71463 -15.13689 -14.26843 -14.02413 -13.87837 -13.66194 -13.59418 -13.15497 -12.80406 -12.75675 -12.59053 -12.19370 -12.03784 -11.71098 -11.50347 -11.40178 -11.23668 -11.08942 -10.91738 -10.73844 -10.68094 -10.45870 -10.41009 -10.08620 -9.77422 -9.75876 -9.63980 -8.47384 -8.26993 -8.15569 -6.30558 -3.98765 3.36383 3.47472 3.50024 3.68597 4.11040 4.17463 4.21963 4.42595 4.47685 4.59971 4.62903 4.73216 4.79658 4.98231 5.09835 5.18384 5.27494 5.32217 5.38778 5.44566 5.45980 5.46930 5.56812 5.57171 5.65452 5.71735 5.77819 5.79536 5.83522 5.91963 5.95942 6.10538 6.14776 6.27588 6.64761 6.69351 6.80468 7.03718 7.32487 7.49587 7.59457 7.67274 8.29594 8.52998 8.95011 9.73582 11.10230 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040925 B = 0.002460 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.008975 B =11378.583983 C =11743.554553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.070 2.930 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.600 4.600 8 H 0.048 0.952 9 C 0.008 3.992 10 C -0.100 4.100 11 C 0.059 3.941 12 N -0.693 5.693 13 C 0.060 3.940 14 C -0.114 4.114 15 C 0.079 3.921 16 H 0.069 0.931 17 C -0.150 4.150 18 C -0.139 4.139 19 C 0.081 3.919 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.156 4.156 23 O -0.344 6.344 24 H 0.268 0.732 25 H 0.005 0.995 26 H 0.007 0.993 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.337 0.663 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 -29.074 2.638 29.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.191 4.191 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.638 4.638 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.138 4.138 11 C -0.070 4.070 12 N -0.324 5.324 13 C -0.070 4.070 14 C -0.152 4.152 15 C 0.021 3.979 16 H 0.087 0.913 17 C -0.188 4.188 18 C -0.177 4.177 19 C 0.041 3.959 20 C -0.167 4.167 21 C -0.174 4.174 22 C -0.193 4.193 23 O -0.263 6.263 24 H 0.078 0.922 25 H 0.023 0.977 26 H 0.025 0.975 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.708 -27.238 2.064 27.567 hybrid contribution -0.062 -1.878 0.740 2.019 sum 3.646 -29.116 2.803 29.477 Atomic orbital electron populations 1.70780 1.06889 1.30548 1.46969 1.25875 0.96589 1.02775 0.93885 0.83540 0.74861 0.75314 0.76496 1.20804 1.21480 1.21437 1.22071 0.94301 0.92066 1.55360 0.93334 1.19201 0.94687 0.93221 0.95815 1.21484 0.98874 0.92513 1.00899 1.22120 0.94186 0.90919 0.99785 1.60562 1.20461 1.01601 1.49729 1.21889 0.95619 0.88773 1.00678 1.21783 0.98123 0.92166 1.03152 1.22814 0.92915 0.95123 0.87043 0.91289 1.22992 1.00466 0.96760 0.98548 1.22898 0.96817 1.00211 0.97754 1.22659 0.93492 0.82995 0.96717 1.22876 0.96695 1.01797 0.95305 1.22850 0.96415 1.02011 0.96099 1.23296 0.97761 0.99991 0.98299 1.88769 1.75330 1.22577 1.39644 0.92157 0.97718 0.97500 0.92417 0.93517 0.95873 0.91639 0.84629 0.94881 0.91478 0.89859 0.91371 0.90664 0.90168 0.90282 0.90386 0.88915 0.90392 0.89781 0.91337 0.90841 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.03 13.65 55.43 0.76 -28.27 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 3 Si 1.07 26.07 29.90 -169.99 -5.08 20.99 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.60 -17.86 9.11 -34.44 -0.31 -18.17 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 10 C -0.10 -2.19 5.41 -26.73 -0.14 -2.34 16 11 C 0.06 1.09 5.69 -3.82 -0.02 1.07 16 12 N -0.69 -10.93 6.50 -113.78 -0.74 -11.67 16 13 C 0.06 0.81 5.60 -3.83 -0.02 0.79 16 14 C -0.11 -1.24 4.96 -26.73 -0.13 -1.38 16 15 C 0.08 0.78 3.43 -26.12 -0.09 0.69 16 16 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 17 C -0.15 -1.14 6.65 -25.07 -0.17 -1.31 16 18 C -0.14 -1.01 6.48 -25.21 -0.16 -1.17 16 19 C 0.08 0.72 1.12 -90.53 -0.10 0.61 16 20 C -0.13 -1.01 7.64 -26.40 -0.20 -1.21 16 21 C -0.14 -1.04 8.09 -25.72 -0.21 -1.25 16 22 C -0.16 -1.18 7.63 -26.40 -0.20 -1.39 16 23 O -0.34 -4.00 10.64 -35.23 -0.37 -4.38 16 24 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 25 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 26 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.34 5.01 8.73 -39.29 -0.34 4.66 16 32 H 0.03 0.49 7.89 -51.93 -0.41 0.08 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.58 7.70 -51.93 -0.40 0.18 16 38 H 0.08 0.45 7.96 -51.93 -0.41 0.04 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.53 8.01 -51.93 -0.42 0.11 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -32.31 356.96 -10.70 -43.01 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.65 Total: -0.39 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -1.98 Total: -24.68 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.02 Total: -39.94 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.37 Total: -4.38 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.31 -10.70 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717000615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.939 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds