Wall clock time and date at job start Mon Mar 30 2020 06:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00064 * 180.02562 * 12 11 10 14 14 C 1.52990 * 109.46964 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.47127 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.84688 * 54.29777 * 15 14 13 17 17 C 1.54164 * 109.85602 * 175.24470 * 15 14 13 18 18 C 1.55002 * 104.26652 * 121.24287 * 17 15 14 19 19 C 1.53899 * 101.92073 * 19.78799 * 18 17 15 20 20 C 1.52640 * 115.55517 * 195.01232 * 19 18 17 21 21 C 1.53989 * 86.73812 * 217.58255 * 20 19 18 22 22 C 1.52647 * 115.54126 * 93.99502 * 19 18 17 23 23 O 1.43264 * 105.18834 * 324.58189 * 19 18 17 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 30 30 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 31 31 H 1.00902 * 111.00046 * 56.04586 * 12 11 10 32 32 H 1.09006 * 109.46752 * 299.99739 * 13 12 11 33 33 H 1.08997 * 109.47048 * 59.99621 * 13 12 11 34 34 H 1.09006 * 109.46966 * 299.99355 * 14 13 12 35 35 H 1.08997 * 109.47754 * 59.99801 * 14 13 12 36 36 H 1.09003 * 110.47678 * 239.94130 * 17 15 14 37 37 H 1.08997 * 110.47636 * 2.54734 * 17 15 14 38 38 H 1.08999 * 110.93997 * 137.94431 * 18 17 15 39 39 H 1.09006 * 110.94011 * 261.63375 * 18 17 15 40 40 H 1.08998 * 113.66935 * 332.03904 * 20 19 18 41 41 H 1.08999 * 113.66791 * 103.12026 * 20 19 18 42 42 H 1.09000 * 113.57585 * 269.98518 * 21 20 19 43 43 H 1.08992 * 113.65506 * 139.19779 * 21 20 19 44 44 H 1.09001 * 113.66642 * 256.88688 * 22 19 18 45 45 H 1.09000 * 113.67175 * 27.96957 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 1.7347 -7.3950 0.0018 14 6 2.7596 -8.5309 0.0031 15 6 2.0303 -9.8759 0.0038 16 1 1.3283 -9.9166 -0.8291 17 6 3.0510 -11.0251 -0.1151 18 6 2.8157 -11.8781 1.1575 19 6 1.4006 -11.4413 1.5759 20 6 0.9865 -11.8221 2.9948 21 6 -0.4182 -12.0834 2.4205 22 6 0.2618 -12.3165 1.0587 23 8 1.3249 -10.0490 1.2468 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8906 29 1 0.8540 -5.0446 0.8914 30 1 0.8534 -5.0451 -0.8886 31 1 3.0698 -6.0362 0.7832 32 1 1.1095 -7.4692 0.8917 33 1 1.1101 -7.4696 -0.8883 34 1 3.3851 -8.4568 -0.8865 35 1 3.3839 -8.4561 0.8935 36 1 2.8579 -11.6155 -1.0109 37 1 4.0676 -10.6323 -0.1282 38 1 2.8416 -12.9424 0.9234 39 1 3.5437 -11.6330 1.9309 40 1 1.4800 -12.7190 3.3689 41 1 1.0236 -10.9912 3.6993 42 1 -1.0669 -11.2076 2.4398 43 1 -0.8979 -12.9739 2.8265 44 1 -0.2790 -11.8797 0.2191 45 1 0.5505 -13.3531 0.8855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717000615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:28 Heat of formation + Delta-G solvation = -75.587825 kcal Electronic energy + Delta-G solvation = -20004.880318 eV Core-core repulsion = 17020.731999 eV Total energy + Delta-G solvation = -2984.148319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52823 -38.38957 -37.34058 -35.90891 -33.87039 -33.07244 -31.40465 -28.26837 -26.89596 -26.40923 -24.57950 -23.60058 -22.71893 -22.21879 -21.78758 -20.18274 -18.92878 -17.36499 -17.16564 -16.73996 -16.50580 -15.94530 -15.75650 -15.62258 -15.32852 -15.16774 -14.59219 -14.46619 -13.77531 -13.71063 -13.65619 -13.32533 -13.17893 -12.89130 -12.71311 -12.61533 -12.43429 -12.12234 -12.06462 -11.99307 -11.91491 -11.77145 -11.65040 -11.48100 -11.32044 -11.03114 -10.67671 -10.56306 -10.44819 -9.49839 -8.71804 -6.42107 1.51738 1.61037 1.80549 2.56195 2.70847 3.06801 3.13575 3.49895 3.59299 3.79146 3.83510 3.89938 3.99151 4.06593 4.10583 4.18299 4.27745 4.33688 4.37942 4.54521 4.55520 4.65295 4.73570 4.75544 4.76769 4.80316 4.87035 4.92485 4.98225 4.99142 5.00952 5.06121 5.08420 5.14917 5.23622 5.33945 5.38511 5.39985 5.49334 5.90801 6.01988 6.12321 6.15920 6.37469 6.55160 7.40662 8.69124 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040925 B = 0.002460 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.008975 B =11378.583983 C =11743.554553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.043 4.043 3 Si 1.121 2.879 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.620 4.620 8 H 0.052 0.948 9 C 0.008 3.992 10 C -0.085 4.085 11 C 0.071 3.929 12 N -0.690 5.690 13 C 0.063 3.937 14 C -0.105 4.105 15 C 0.076 3.924 16 H 0.066 0.934 17 C -0.146 4.146 18 C -0.135 4.135 19 C 0.067 3.933 20 C -0.129 4.129 21 C -0.139 4.139 22 C -0.150 4.150 23 O -0.375 6.375 24 H 0.254 0.746 25 H -0.014 1.014 26 H -0.012 1.012 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.018 0.982 30 H 0.061 0.939 31 H 0.344 0.656 32 H 0.019 0.981 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 -30.528 2.512 31.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.941 3.059 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.658 4.658 8 H 0.070 0.930 9 C -0.030 4.030 10 C -0.123 4.123 11 C -0.059 4.059 12 N -0.321 5.321 13 C -0.066 4.066 14 C -0.143 4.143 15 C 0.018 3.982 16 H 0.084 0.916 17 C -0.183 4.183 18 C -0.172 4.172 19 C 0.027 3.973 20 C -0.166 4.166 21 C -0.177 4.177 22 C -0.188 4.188 23 O -0.295 6.295 24 H 0.063 0.937 25 H 0.005 0.995 26 H 0.007 0.993 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.495 -28.736 1.941 29.321 hybrid contribution -0.663 -1.471 0.796 1.799 sum 4.833 -30.207 2.737 30.713 Atomic orbital electron populations 1.70921 1.08002 1.29781 1.48911 1.27571 0.96636 1.07122 0.92609 0.82907 0.74098 0.70745 0.78160 1.20771 1.19241 1.19231 1.22517 0.94790 0.93425 1.55076 0.92970 1.19158 0.95147 0.94667 0.93980 1.21258 0.97759 0.92410 1.00902 1.21840 0.94098 0.90486 0.99434 1.60517 1.19872 1.01575 1.50101 1.21915 0.96229 0.88540 0.99915 1.21713 0.97386 0.91651 1.03522 1.22853 0.93401 0.95366 0.86545 0.91564 1.22986 0.99912 0.96014 0.99432 1.22909 0.95550 1.01349 0.97403 1.22930 0.94912 0.82000 0.97445 1.22948 0.96894 1.02134 0.94605 1.22841 0.96326 1.01910 0.96611 1.23313 0.97019 1.00878 0.97568 1.88738 1.75840 1.24595 1.40309 0.93656 0.99540 0.99335 0.92643 0.93076 0.96360 0.92022 0.83854 0.96224 0.91671 0.88918 0.91426 0.89225 0.89566 0.88144 0.90485 0.86620 0.92034 0.91770 0.89672 0.92005 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.48 13.65 21.45 0.29 -60.19 16 2 C -0.04 -2.57 5.46 84.65 0.46 -2.11 16 3 Si 1.12 51.65 29.90 68.60 2.05 53.70 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.62 -37.15 9.11 25.60 0.23 -36.92 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.01 0.45 4.28 29.85 0.13 0.57 16 10 C -0.09 -3.76 5.41 30.59 0.17 -3.60 16 11 C 0.07 2.64 5.69 86.30 0.49 3.13 16 12 N -0.69 -21.26 6.50 -513.88 -3.34 -24.60 16 13 C 0.06 1.69 5.60 86.30 0.48 2.17 16 14 C -0.10 -2.17 4.96 30.59 0.15 -2.02 16 15 C 0.08 1.43 3.43 30.99 0.11 1.54 16 16 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 17 C -0.15 -1.89 6.65 31.67 0.21 -1.68 16 18 C -0.13 -1.63 6.48 31.58 0.20 -1.42 16 19 C 0.07 1.09 1.12 -10.74 -0.01 1.08 16 20 C -0.13 -1.86 7.64 30.81 0.24 -1.63 16 21 C -0.14 -2.02 8.09 31.25 0.25 -1.77 16 22 C -0.15 -2.06 7.63 30.81 0.24 -1.82 16 23 O -0.37 -8.63 10.64 -148.98 -1.58 -10.21 16 24 H 0.25 16.61 7.22 -92.71 -0.67 15.94 16 25 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 26 H -0.01 -0.68 8.01 -2.38 -0.02 -0.70 16 27 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.34 9.87 8.73 -89.69 -0.78 9.08 16 32 H 0.02 0.58 7.89 -2.38 -0.02 0.56 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.02 7.70 -2.39 -0.02 1.00 16 38 H 0.10 0.79 7.96 -2.39 -0.02 0.77 16 39 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.11 1.00 8.01 -2.39 -0.02 0.98 16 Total: -1.00 -69.81 356.96 1.01 -68.80 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.24 Total: 16.97 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.35 Total: -44.47 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -3.05 Total: -84.79 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -1.58 Total: -10.21 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.70 kcal Total: -69.81 1.01 -68.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717000615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.784 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds