Wall clock time and date at job start Mon Mar 30 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86795 * 119.99815 * 2 1 4 4 H 1.48505 * 109.46981 * 239.99756 * 3 2 1 5 5 H 1.48503 * 109.47459 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47029 * 119.99953 * 3 2 1 7 7 C 1.37870 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46822 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46925 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47029 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99905 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47425 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47388 * 179.97438 * 14 13 12 16 16 H 1.09002 * 110.53199 * 307.81626 * 15 14 13 17 17 C 1.55050 * 110.59651 * 184.99828 * 15 14 13 18 18 C 1.54968 * 102.12056 * 204.82323 * 17 15 14 19 19 C 1.53518 * 103.89577 * 20.86012 * 18 17 15 20 20 C 1.53147 * 114.90334 * 131.92894 * 19 18 17 21 21 C 1.53896 * 86.89736 * 91.40120 * 20 19 18 22 22 C 1.53147 * 114.89200 * 231.55063 * 19 18 17 23 23 O 1.43068 * 108.05557 * 1.72424 * 19 18 17 24 24 H 0.97000 * 119.99792 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47419 * 59.99615 * 9 7 2 26 26 H 1.08999 * 109.46724 * 299.99444 * 9 7 2 27 27 H 1.09001 * 109.47616 * 60.00315 * 10 9 7 28 28 H 1.08998 * 109.47626 * 299.99620 * 10 9 7 29 29 H 1.08995 * 109.47318 * 59.99797 * 11 10 9 30 30 H 1.09006 * 109.47085 * 299.99734 * 11 10 9 31 31 H 1.00894 * 110.99803 * 56.04637 * 12 11 10 32 32 H 1.09002 * 109.46833 * 59.99451 * 13 12 11 33 33 H 1.09006 * 109.47034 * 300.00339 * 13 12 11 34 34 H 1.08999 * 109.46764 * 59.99952 * 14 13 12 35 35 H 1.09000 * 109.46689 * 300.00318 * 14 13 12 36 36 H 1.09000 * 110.86758 * 86.66168 * 17 15 14 37 37 H 1.09000 * 111.04655 * 323.05819 * 17 15 14 38 38 H 1.09007 * 110.53717 * 262.26090 * 18 17 15 39 39 H 1.08997 * 110.53975 * 139.47028 * 18 17 15 40 40 H 1.09004 * 113.64513 * 336.90368 * 20 19 18 41 41 H 1.08999 * 113.72590 * 205.91261 * 20 19 18 42 42 H 1.09003 * 113.59533 * 139.54132 * 21 20 19 43 43 H 1.08997 * 113.60230 * 270.38789 * 21 20 19 44 44 H 1.08998 * 113.64731 * 154.08722 * 22 19 18 45 45 H 1.09010 * 113.64453 * 23.08985 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4350 -6.1037 0.0018 13 6 1.7347 -7.3950 0.0030 14 6 2.7595 -8.5310 0.0030 15 6 2.0302 -9.8759 0.0050 16 1 1.2986 -9.9129 0.8121 17 6 3.0413 -11.0445 0.1314 18 6 2.2643 -12.2186 -0.5160 19 6 1.2050 -11.5253 -1.3845 20 6 1.0962 -12.0573 -2.8164 21 6 0.0267 -13.0282 -2.2854 22 6 -0.2303 -12.0101 -1.1603 23 8 1.3954 -10.1118 -1.2720 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6044 0.8905 28 1 2.8720 -3.6044 -0.8894 29 1 0.8534 -5.0451 -0.8885 30 1 0.8540 -5.0446 0.8915 31 1 3.0698 -6.0362 0.7831 32 1 1.1095 -7.4701 -0.8867 33 1 1.1100 -7.4687 0.8933 34 1 3.3850 -8.4560 0.8925 35 1 3.3838 -8.4570 -0.8874 36 1 3.2624 -11.2551 1.1778 37 1 3.9561 -10.8323 -0.4219 38 1 1.7893 -12.8315 0.2502 39 1 2.9290 -12.8231 -1.1330 40 1 2.0008 -12.5534 -3.1684 41 1 0.7094 -11.3272 -3.5273 42 1 -0.8199 -13.1562 -2.9599 43 1 0.4341 -13.9754 -1.9319 44 1 -0.9869 -11.2659 -1.4088 45 1 -0.3896 -12.4682 -0.1841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717000617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:32 Heat of formation + Delta-G solvation = -53.529457 kcal Electronic energy + Delta-G solvation = -19879.942397 eV Core-core repulsion = 16896.750600 eV Total energy + Delta-G solvation = -2983.191797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75521 -37.34502 -36.19412 -33.75230 -32.55267 -31.82519 -30.06756 -26.88463 -26.11107 -25.23760 -23.32282 -22.43211 -21.70817 -21.15829 -19.92537 -19.20620 -17.01157 -16.30442 -16.23921 -15.57927 -15.35477 -15.11808 -14.51432 -14.12895 -14.03873 -13.68764 -13.56422 -12.97576 -12.64925 -12.54268 -12.24122 -12.04145 -11.90353 -11.80341 -11.49052 -11.34417 -11.19308 -11.04538 -10.86157 -10.76237 -10.74239 -10.59853 -10.51241 -10.42137 -9.67370 -9.62798 -9.27242 -9.00930 -8.29427 -8.08936 -5.94753 -3.96790 3.37123 3.40902 3.43883 3.54751 4.13516 4.17839 4.19794 4.41119 4.46535 4.51490 4.63419 4.77895 4.79831 5.03026 5.10309 5.20702 5.29962 5.36716 5.40714 5.44234 5.46241 5.53762 5.54538 5.56801 5.65565 5.71031 5.78021 5.87792 5.89077 5.97599 6.00788 6.17971 6.19973 6.39404 6.78698 6.83817 6.86785 7.20061 7.42234 7.71447 7.74444 7.89976 8.06071 8.49330 9.10301 9.66793 11.16732 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044123 B = 0.002381 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.440856 B =11755.449984 C =12103.911011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.692 5.692 13 C 0.060 3.940 14 C -0.110 4.110 15 C 0.079 3.921 16 H 0.068 0.932 17 C -0.150 4.150 18 C -0.130 4.130 19 C 0.078 3.922 20 C -0.128 4.128 21 C -0.141 4.141 22 C -0.152 4.152 23 O -0.352 6.352 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.335 0.665 32 H 0.075 0.925 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.034 -28.987 -0.428 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.323 5.323 13 C -0.069 4.069 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.086 0.914 17 C -0.188 4.188 18 C -0.167 4.167 19 C 0.038 3.962 20 C -0.166 4.166 21 C -0.178 4.178 22 C -0.189 4.189 23 O -0.271 6.271 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.895 -28.692 -1.272 28.866 hybrid contribution 0.060 0.768 1.116 1.356 sum 2.955 -27.924 -0.155 28.080 Atomic orbital electron populations 1.69967 1.06055 1.26623 1.51034 1.25040 0.94865 0.99261 0.95436 0.86646 0.79552 0.83113 0.78607 1.20221 1.21335 1.20284 1.21232 0.93025 0.91088 1.50333 0.92717 1.19067 0.94042 0.91381 0.97111 1.21624 0.99162 0.93027 1.00664 1.22120 0.94118 0.90802 0.99880 1.60557 1.20538 1.01599 1.49585 1.21910 0.95533 0.88835 1.00647 1.21608 0.98170 0.91732 1.03316 1.23157 0.93280 0.94907 0.86593 0.91371 1.23206 0.99269 0.94639 1.01683 1.22648 0.97032 0.98079 0.98960 1.23118 0.94545 0.81948 0.96621 1.23117 0.99451 0.98263 0.95760 1.22711 0.99389 0.97220 0.98481 1.23452 0.97466 0.98859 0.99168 1.88881 1.80315 1.21447 1.36433 0.93011 0.96565 0.96831 0.93718 0.92562 0.91496 0.95886 0.84835 0.90610 0.95899 0.90836 0.90107 0.90260 0.90192 0.90498 0.90260 0.90967 0.89125 0.90806 0.90086 0.89210 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.32 5.41 -26.73 -0.14 -2.46 16 11 C 0.06 1.10 5.69 -3.82 -0.02 1.08 16 12 N -0.69 -10.86 6.50 -113.77 -0.74 -11.60 16 13 C 0.06 0.81 5.63 -3.83 -0.02 0.79 16 14 C -0.11 -1.20 5.23 -26.74 -0.14 -1.34 16 15 C 0.08 0.78 3.30 -25.65 -0.08 0.70 16 16 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.15 -1.16 6.60 -24.61 -0.16 -1.32 16 18 C -0.13 -0.94 6.28 -25.42 -0.16 -1.09 16 19 C 0.08 0.71 1.53 -90.20 -0.14 0.57 16 20 C -0.13 -1.04 7.58 -26.19 -0.20 -1.24 16 21 C -0.14 -0.94 7.90 -25.80 -0.20 -1.14 16 22 C -0.15 -1.23 7.57 -26.19 -0.20 -1.43 16 23 O -0.35 -4.21 10.83 -35.23 -0.38 -4.59 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.33 4.78 8.73 -39.29 -0.34 4.44 16 32 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 38 H 0.08 0.47 7.74 -51.92 -0.40 0.07 16 39 H 0.08 0.50 7.75 -51.93 -0.40 0.10 16 40 H 0.07 0.51 7.86 -51.93 -0.41 0.10 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.49 7.87 -51.92 -0.41 0.09 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -31.49 357.98 -10.72 -42.21 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.68 Total: -1.20 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -2.02 Total: -20.43 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.00 Total: -38.53 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.38 Total: -4.59 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.49 -10.72 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717000617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.324 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds