Wall clock time and date at job start Mon Mar 30 2020 06:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86795 * 119.99815 * 2 1 4 4 H 1.48505 * 109.46981 * 239.99756 * 3 2 1 5 5 H 1.48503 * 109.47459 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47029 * 119.99953 * 3 2 1 7 7 C 1.37870 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46822 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46925 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47029 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99905 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47425 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47388 * 179.97438 * 14 13 12 16 16 H 1.09002 * 110.53199 * 307.81626 * 15 14 13 17 17 C 1.55050 * 110.59651 * 184.99828 * 15 14 13 18 18 C 1.54968 * 102.12056 * 204.82323 * 17 15 14 19 19 C 1.53518 * 103.89577 * 20.86012 * 18 17 15 20 20 C 1.53147 * 114.90334 * 131.92894 * 19 18 17 21 21 C 1.53896 * 86.89736 * 91.40120 * 20 19 18 22 22 C 1.53147 * 114.89200 * 231.55063 * 19 18 17 23 23 O 1.43068 * 108.05557 * 1.72424 * 19 18 17 24 24 H 0.97000 * 119.99792 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47419 * 59.99615 * 9 7 2 26 26 H 1.08999 * 109.46724 * 299.99444 * 9 7 2 27 27 H 1.09001 * 109.47616 * 60.00315 * 10 9 7 28 28 H 1.08998 * 109.47626 * 299.99620 * 10 9 7 29 29 H 1.08995 * 109.47318 * 59.99797 * 11 10 9 30 30 H 1.09006 * 109.47085 * 299.99734 * 11 10 9 31 31 H 1.00894 * 110.99803 * 56.04637 * 12 11 10 32 32 H 1.09002 * 109.46833 * 59.99451 * 13 12 11 33 33 H 1.09006 * 109.47034 * 300.00339 * 13 12 11 34 34 H 1.08999 * 109.46764 * 59.99952 * 14 13 12 35 35 H 1.09000 * 109.46689 * 300.00318 * 14 13 12 36 36 H 1.09000 * 110.86758 * 86.66168 * 17 15 14 37 37 H 1.09000 * 111.04655 * 323.05819 * 17 15 14 38 38 H 1.09007 * 110.53717 * 262.26090 * 18 17 15 39 39 H 1.08997 * 110.53975 * 139.47028 * 18 17 15 40 40 H 1.09004 * 113.64513 * 336.90368 * 20 19 18 41 41 H 1.08999 * 113.72590 * 205.91261 * 20 19 18 42 42 H 1.09003 * 113.59533 * 139.54132 * 21 20 19 43 43 H 1.08997 * 113.60230 * 270.38789 * 21 20 19 44 44 H 1.08998 * 113.64731 * 154.08722 * 22 19 18 45 45 H 1.09010 * 113.64453 * 23.08985 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4350 -6.1037 0.0018 13 6 1.7347 -7.3950 0.0030 14 6 2.7595 -8.5310 0.0030 15 6 2.0302 -9.8759 0.0050 16 1 1.2986 -9.9129 0.8121 17 6 3.0413 -11.0445 0.1314 18 6 2.2643 -12.2186 -0.5160 19 6 1.2050 -11.5253 -1.3845 20 6 1.0962 -12.0573 -2.8164 21 6 0.0267 -13.0282 -2.2854 22 6 -0.2303 -12.0101 -1.1603 23 8 1.3954 -10.1118 -1.2720 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6044 0.8905 28 1 2.8720 -3.6044 -0.8894 29 1 0.8534 -5.0451 -0.8885 30 1 0.8540 -5.0446 0.8915 31 1 3.0698 -6.0362 0.7831 32 1 1.1095 -7.4701 -0.8867 33 1 1.1100 -7.4687 0.8933 34 1 3.3850 -8.4560 0.8925 35 1 3.3838 -8.4570 -0.8874 36 1 3.2624 -11.2551 1.1778 37 1 3.9561 -10.8323 -0.4219 38 1 1.7893 -12.8315 0.2502 39 1 2.9290 -12.8231 -1.1330 40 1 2.0008 -12.5534 -3.1684 41 1 0.7094 -11.3272 -3.5273 42 1 -0.8199 -13.1562 -2.9599 43 1 0.4341 -13.9754 -1.9319 44 1 -0.9869 -11.2659 -1.4088 45 1 -0.3896 -12.4682 -0.1841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717000617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:31 Heat of formation + Delta-G solvation = -72.537575 kcal Electronic energy + Delta-G solvation = -19880.766651 eV Core-core repulsion = 16896.750600 eV Total energy + Delta-G solvation = -2984.016050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42163 -38.33598 -37.33312 -35.61183 -33.86511 -32.97132 -31.42517 -28.38004 -26.77279 -26.50550 -24.46032 -23.67894 -22.73308 -22.19511 -21.56153 -19.84902 -18.49201 -17.79460 -17.00507 -16.79721 -16.55774 -16.03696 -15.93360 -15.47486 -15.28003 -14.78568 -14.57870 -14.19926 -13.88944 -13.51864 -13.45668 -13.25453 -13.12030 -12.78014 -12.64812 -12.61034 -12.49098 -12.37518 -12.17019 -11.94603 -11.75453 -11.72057 -11.52243 -11.43483 -11.35952 -11.21327 -11.03397 -10.55636 -10.39765 -9.40047 -8.20493 -6.32115 1.39688 1.43623 1.51520 2.40964 2.86675 3.12212 3.13865 3.52811 3.58946 3.73801 3.86683 3.93101 4.01045 4.07744 4.19859 4.24792 4.31984 4.40375 4.44549 4.55709 4.67850 4.70183 4.78398 4.80919 4.83652 4.91589 4.94280 4.98506 5.02519 5.03652 5.09493 5.09909 5.16897 5.23372 5.27055 5.34946 5.43949 5.50699 5.73170 5.84443 6.02401 6.16872 6.25773 6.50702 6.84552 7.37098 8.91459 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044123 B = 0.002381 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.440856 B =11755.449984 C =12103.911011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.091 4.091 11 C 0.071 3.929 12 N -0.693 5.693 13 C 0.063 3.937 14 C -0.101 4.101 15 C 0.074 3.926 16 H 0.070 0.930 17 C -0.145 4.145 18 C -0.125 4.125 19 C 0.064 3.936 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.156 4.156 23 O -0.385 6.385 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.009 1.009 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.023 0.977 31 H 0.346 0.654 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -30.207 0.362 30.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.058 4.058 12 N -0.325 5.325 13 C -0.066 4.066 14 C -0.139 4.139 15 C 0.017 3.983 16 H 0.088 0.912 17 C -0.183 4.183 18 C -0.162 4.162 19 C 0.024 3.976 20 C -0.172 4.172 21 C -0.166 4.166 22 C -0.194 4.194 23 O -0.305 6.305 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.010 0.990 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.165 0.835 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.564 -29.937 -0.478 30.287 hybrid contribution -0.507 1.130 0.850 1.502 sum 4.058 -28.808 0.373 29.094 Atomic orbital electron populations 1.70107 1.07882 1.27888 1.51668 1.26047 0.95837 1.03572 0.94670 0.85448 0.78225 0.77786 0.79269 1.19171 1.20757 1.18958 1.21675 0.93599 0.92334 1.50616 0.92083 1.18979 0.94453 0.93237 0.94674 1.21374 0.98000 0.92712 1.00852 1.21827 0.94060 0.90504 0.99389 1.60461 1.20110 1.01535 1.50350 1.21905 0.96165 0.88605 0.99914 1.21538 0.97427 0.91221 1.03699 1.23226 0.93879 0.95172 0.86068 0.91223 1.23191 0.98475 0.93642 1.02958 1.22669 0.96550 0.97936 0.99088 1.23444 0.95614 0.80967 0.97537 1.23152 1.00443 0.98437 0.95196 1.22704 0.98961 0.97286 0.97626 1.23450 0.96591 0.99002 1.00317 1.88855 1.80787 1.23420 1.37414 0.92737 0.99278 0.99049 0.92722 0.92948 0.92674 0.95864 0.83540 0.92659 0.95279 0.88765 0.91285 0.88329 0.90306 0.89024 0.89112 0.89904 0.90846 0.90425 0.88190 0.90977 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.29 21.45 0.28 -58.29 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 3 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.99 5.41 30.60 0.17 -3.83 16 11 C 0.07 2.67 5.69 86.30 0.49 3.16 16 12 N -0.69 -21.26 6.50 -513.87 -3.34 -24.61 16 13 C 0.06 1.69 5.63 86.30 0.49 2.17 16 14 C -0.10 -2.09 5.23 30.59 0.16 -1.93 16 15 C 0.07 1.40 3.30 31.29 0.10 1.50 16 16 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 17 C -0.15 -1.91 6.60 31.97 0.21 -1.70 16 18 C -0.13 -1.51 6.28 31.44 0.20 -1.31 16 19 C 0.06 1.10 1.53 -10.52 -0.02 1.09 16 20 C -0.13 -2.10 7.58 30.95 0.23 -1.87 16 21 C -0.13 -1.53 7.90 31.20 0.25 -1.28 16 22 C -0.16 -2.41 7.57 30.94 0.23 -2.18 16 23 O -0.38 -9.23 10.83 -148.98 -1.61 -10.84 16 24 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 25 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.35 9.34 8.73 -89.70 -0.78 8.56 16 32 H 0.05 1.70 8.06 -2.39 -0.02 1.68 16 33 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.06 8.06 -2.39 -0.02 1.04 16 38 H 0.09 0.84 7.74 -2.38 -0.02 0.82 16 39 H 0.09 0.89 7.75 -2.39 -0.02 0.87 16 40 H 0.08 1.07 7.86 -2.38 -0.02 1.05 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 1.02 7.87 -2.38 -0.02 1.01 16 Total: -1.00 -68.34 357.98 0.85 -67.49 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.14 Total: 15.29 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 3.36 Total: -36.37 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -3.06 Total: -82.90 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.61 Total: -10.84 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.34 0.85 -67.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717000617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.047 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds