Wall clock time and date at job start Mon Mar 30 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48504 * 109.46861 * 274.80220 * 3 2 1 5 5 H 1.48500 * 109.46972 * 34.79466 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.79933 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00021 * 4.59174 * 7 2 1 9 9 C 1.50705 * 119.99864 * 184.58643 * 7 2 1 10 10 C 1.53001 * 115.55119 * 294.71783 * 9 7 2 11 11 C 1.52998 * 109.46993 * 280.29197 * 10 9 7 12 12 C 1.50699 * 108.78251 * 172.29074 * 11 10 9 13 13 O 1.20819 * 120.00298 * 251.41893 * 12 11 10 14 14 O 1.34235 * 119.99581 * 71.41965 * 12 11 10 15 15 C 1.50451 * 108.72341 * 290.64487 * 11 10 9 16 16 C 1.54311 * 108.49247 * 214.53333 * 15 11 10 17 17 C 1.45879 * 112.18799 * 281.46375 * 16 15 11 18 18 C 1.54303 * 112.18636 * 61.11943 * 17 16 15 19 19 C 1.50440 * 108.50125 * 281.46582 * 18 17 16 20 20 N 1.48000 * 112.82585 * 93.72737 * 19 18 17 21 21 C 1.52997 * 117.51531 * 80.41898 * 9 7 2 22 22 C 1.52999 * 60.00065 * 107.47908 * 21 9 7 23 23 H 0.96998 * 120.00056 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46919 * 160.29041 * 10 9 7 25 25 H 1.08993 * 109.47006 * 40.29004 * 10 9 7 26 26 H 0.96703 * 116.99500 * 180.02562 * 14 12 11 27 27 H 1.08994 * 109.63241 * 94.83285 * 15 11 10 28 28 H 1.08995 * 109.63242 * 334.23079 * 15 11 10 29 29 H 1.09000 * 108.93767 * 160.76639 * 16 15 11 30 30 H 1.09008 * 108.93958 * 42.16286 * 16 15 11 31 31 H 1.08995 * 108.94036 * 181.82062 * 17 16 15 32 32 H 1.09005 * 108.93786 * 300.51776 * 17 16 15 33 33 H 1.09008 * 109.63259 * 41.17194 * 18 17 16 34 34 H 1.09000 * 109.63380 * 161.76064 * 18 17 16 35 35 H 1.09007 * 108.81510 * 214.58739 * 19 18 17 36 36 H 1.09002 * 108.81235 * 332.97304 * 19 18 17 37 37 H 1.00900 * 110.99955 * 84.83935 * 20 19 18 38 38 H 1.09006 * 117.49805 * 214.96911 * 21 9 7 39 39 H 1.08997 * 117.50329 * 359.97438 * 21 9 7 40 40 H 1.08999 * 117.50191 * 252.50800 * 22 21 9 41 41 H 1.09004 * 117.50100 * 107.48986 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3951 2.1050 -1.3952 5 1 1.5009 2.6213 0.7989 6 1 3.5937 1.4130 0.5961 7 6 2.0045 -1.1941 0.0005 8 1 1.4671 -2.1279 -0.0739 9 6 3.5080 -1.1960 0.1049 10 6 4.2523 -0.5706 -1.0765 11 6 4.3183 -1.5762 -2.2277 12 6 4.8818 -0.8860 -3.4431 13 8 4.1642 -0.6344 -4.3820 14 8 6.1810 -0.5508 -3.4825 15 6 5.2403 -2.6987 -1.8362 16 6 5.9863 -3.1819 -3.0976 17 6 5.1575 -4.0462 -3.9307 18 6 3.8934 -3.3242 -4.4424 19 6 2.8815 -3.2872 -3.3298 20 7 2.9470 -2.0402 -2.5353 21 6 4.1201 -1.0242 1.4965 22 6 4.1660 -2.3876 0.8036 23 1 -0.4850 0.8400 -0.0004 24 1 5.2633 -0.3037 -0.7687 25 1 3.7245 0.3244 -1.4057 26 1 6.4963 -0.1093 -4.2831 27 1 4.6595 -3.5203 -1.4170 28 1 5.9598 -2.3416 -1.0995 29 1 6.8766 -3.7322 -2.7930 30 1 6.2917 -2.3140 -3.6822 31 1 5.7441 -4.3815 -4.7860 32 1 4.8548 -4.9157 -3.3470 33 1 4.1479 -2.3069 -4.7400 34 1 3.4817 -3.8658 -5.2940 35 1 1.8836 -3.3784 -3.7590 36 1 3.0570 -4.1343 -2.6667 37 1 2.4057 -1.3069 -2.9680 38 1 5.0532 -0.4656 1.5704 39 1 3.4355 -0.9092 2.3368 40 1 3.5115 -3.1698 1.1881 41 1 5.1292 -2.7259 0.4217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722757963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:55 Heat of formation + Delta-G solvation = -32.098197 kcal Electronic energy + Delta-G solvation = -22971.412492 eV Core-core repulsion = 19853.316930 eV Total energy + Delta-G solvation = -3118.095562 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40759 -38.08585 -36.66354 -36.14862 -33.18832 -32.39833 -31.84516 -27.84280 -26.12390 -25.16585 -24.14762 -22.57581 -21.24318 -20.35330 -19.16508 -18.78756 -17.82063 -16.82751 -16.14087 -15.86987 -15.41254 -14.71749 -14.46441 -14.07163 -13.83083 -13.47994 -13.22829 -12.83431 -12.68832 -12.50308 -12.18403 -12.02179 -11.75517 -11.51692 -10.95718 -10.88189 -10.68432 -10.54805 -10.37274 -10.31140 -10.11234 -10.00690 -9.87858 -9.72036 -9.28633 -8.79392 -8.44913 -8.26543 -7.75533 -5.91268 -3.84101 2.35936 3.25845 3.34410 3.46487 3.50339 4.47228 4.55645 4.84346 4.92555 5.04534 5.22676 5.27333 5.31724 5.42459 5.56483 5.67224 5.85932 5.87448 5.96661 6.00887 6.09942 6.16161 6.25056 6.28228 6.29691 6.35326 6.39756 6.45556 6.51200 6.60116 6.63471 6.70304 6.77776 6.89047 7.26682 7.29246 7.59627 7.94279 8.00980 8.07573 8.75183 9.18603 9.73187 11.21439 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.008696 C = 0.008489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.618538 B = 3219.230268 C = 3297.478620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.071 3.929 3 Si 0.860 3.140 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.255 1.255 7 C -0.434 4.434 8 H 0.081 0.919 9 C 0.028 3.972 10 C -0.075 4.075 11 C 0.157 3.843 12 C 0.459 3.541 13 O -0.517 6.517 14 O -0.512 6.512 15 C -0.102 4.102 16 C -0.157 4.157 17 C -0.115 4.115 18 C -0.196 4.196 19 C 0.063 3.937 20 N -0.621 5.621 21 C -0.206 4.206 22 C -0.187 4.187 23 H 0.259 0.741 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.394 0.606 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.357 0.643 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.663 -4.770 -6.566 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.129 4.129 3 Si 0.689 3.311 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.178 1.178 7 C -0.472 4.472 8 H 0.099 0.901 9 C 0.027 3.973 10 C -0.113 4.113 11 C 0.062 3.938 12 C 0.301 3.699 13 O -0.407 6.407 14 O -0.322 6.322 15 C -0.139 4.139 16 C -0.194 4.194 17 C -0.153 4.153 18 C -0.235 4.235 19 C -0.066 4.066 20 N -0.253 5.253 21 C -0.244 4.244 22 C -0.223 4.223 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.252 0.748 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.178 0.822 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.101 -5.122 -5.884 14.397 hybrid contribution 0.818 1.689 -1.603 2.469 sum 12.919 -3.433 -7.487 15.321 Atomic orbital electron populations 1.69883 1.06074 1.26333 1.52091 1.24855 0.94400 0.98295 0.95342 0.87185 0.81433 0.84837 0.77615 1.21316 1.22424 1.17846 1.20168 0.86125 0.94176 1.46758 0.90135 1.19058 0.95180 0.96299 0.86778 1.21600 0.99107 0.96078 0.94504 1.20702 0.89331 0.94815 0.88927 1.25825 0.79052 0.74405 0.90581 1.90551 1.59984 1.51482 1.38634 1.84794 1.28452 1.71729 1.47259 1.21647 0.97240 0.97892 0.97132 1.21250 0.99006 1.01514 0.97585 1.20545 0.96806 0.98966 0.98980 1.22809 0.96965 1.04193 0.99490 1.21746 0.98251 0.93759 0.92812 1.60477 1.07594 1.06976 1.50253 1.23161 1.01302 1.00135 0.99772 1.22954 1.00925 0.91885 1.06578 0.93078 0.92528 0.92519 0.74846 0.88816 0.90129 0.91970 0.89970 0.93140 0.92153 0.88406 0.92196 0.91520 0.91358 0.82160 0.91755 0.89824 0.90047 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.86 21.36 24.73 -169.99 -4.20 17.15 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.25 -5.94 5.90 56.52 0.33 -5.60 16 7 C -0.43 -11.38 7.93 -34.44 -0.27 -11.65 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 9 C 0.03 0.61 0.57 -155.66 -0.09 0.52 16 10 C -0.07 -1.50 3.50 -26.73 -0.09 -1.59 16 11 C 0.16 2.75 0.56 -133.42 -0.07 2.67 16 12 C 0.46 7.60 4.14 36.01 0.15 7.75 16 13 O -0.52 -9.61 14.01 -18.74 -0.26 -9.87 16 14 O -0.51 -6.69 10.85 -39.27 -0.43 -7.11 16 15 C -0.10 -1.52 3.03 -27.32 -0.08 -1.60 16 16 C -0.16 -2.03 5.09 -29.42 -0.15 -2.18 16 17 C -0.12 -1.48 5.30 -29.42 -0.16 -1.63 16 18 C -0.20 -2.86 5.62 -27.33 -0.15 -3.02 16 19 C 0.06 1.03 6.01 -4.50 -0.03 1.00 16 20 N -0.62 -11.87 4.24 -102.26 -0.43 -12.30 16 21 C -0.21 -4.22 8.73 -26.73 -0.23 -4.46 16 22 C -0.19 -3.55 8.49 -26.73 -0.23 -3.78 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.06 1.03 7.63 -51.93 -0.40 0.63 16 25 H 0.06 1.26 4.65 -51.93 -0.24 1.02 16 26 H 0.39 3.40 9.10 49.15 0.45 3.85 16 27 H 0.09 1.46 6.17 -51.93 -0.32 1.14 16 28 H 0.08 1.16 6.15 -51.93 -0.32 0.84 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.09 4.00 -48.58 -0.19 0.89 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.75 7.51 -51.93 -0.39 0.36 16 33 H 0.10 1.61 3.28 -53.72 -0.18 1.43 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.08 6.58 -51.93 -0.34 0.74 16 37 H 0.36 7.54 8.04 -39.29 -0.32 7.22 16 38 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 39 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.08 1.25 5.26 -51.93 -0.27 0.98 16 LS Contribution 293.98 15.07 4.43 4.43 Total: -1.00 -29.94 293.98 -6.73 -36.67 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -5.10 Total: 13.46 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.51 Total: -16.10 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.34 Total: -38.63 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.69 Total: -16.99 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.20 Total: 17.15 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.94 -6.73 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722757963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.568 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds