Wall clock time and date at job start Mon Mar 30 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48504 * 109.46861 * 274.80220 * 3 2 1 5 5 H 1.48500 * 109.46972 * 34.79466 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.79933 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00021 * 4.59174 * 7 2 1 9 9 C 1.50705 * 119.99864 * 184.58643 * 7 2 1 10 10 C 1.53001 * 115.55119 * 294.71783 * 9 7 2 11 11 C 1.52998 * 109.46993 * 280.29197 * 10 9 7 12 12 C 1.50699 * 108.78251 * 172.29074 * 11 10 9 13 13 O 1.20819 * 120.00298 * 251.41893 * 12 11 10 14 14 O 1.34235 * 119.99581 * 71.41965 * 12 11 10 15 15 C 1.50451 * 108.72341 * 290.64487 * 11 10 9 16 16 C 1.54311 * 108.49247 * 214.53333 * 15 11 10 17 17 C 1.45879 * 112.18799 * 281.46375 * 16 15 11 18 18 C 1.54303 * 112.18636 * 61.11943 * 17 16 15 19 19 C 1.50440 * 108.50125 * 281.46582 * 18 17 16 20 20 N 1.48000 * 112.82585 * 93.72737 * 19 18 17 21 21 C 1.52997 * 117.51531 * 80.41898 * 9 7 2 22 22 C 1.52999 * 60.00065 * 107.47908 * 21 9 7 23 23 H 0.96998 * 120.00056 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46919 * 160.29041 * 10 9 7 25 25 H 1.08993 * 109.47006 * 40.29004 * 10 9 7 26 26 H 0.96703 * 116.99500 * 180.02562 * 14 12 11 27 27 H 1.08994 * 109.63241 * 94.83285 * 15 11 10 28 28 H 1.08995 * 109.63242 * 334.23079 * 15 11 10 29 29 H 1.09000 * 108.93767 * 160.76639 * 16 15 11 30 30 H 1.09008 * 108.93958 * 42.16286 * 16 15 11 31 31 H 1.08995 * 108.94036 * 181.82062 * 17 16 15 32 32 H 1.09005 * 108.93786 * 300.51776 * 17 16 15 33 33 H 1.09008 * 109.63259 * 41.17194 * 18 17 16 34 34 H 1.09000 * 109.63380 * 161.76064 * 18 17 16 35 35 H 1.09007 * 108.81510 * 214.58739 * 19 18 17 36 36 H 1.09002 * 108.81235 * 332.97304 * 19 18 17 37 37 H 1.00900 * 110.99955 * 84.83935 * 20 19 18 38 38 H 1.09006 * 117.49805 * 214.96911 * 21 9 7 39 39 H 1.08997 * 117.50329 * 359.97438 * 21 9 7 40 40 H 1.08999 * 117.50191 * 252.50800 * 22 21 9 41 41 H 1.09004 * 117.50100 * 107.48986 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3951 2.1050 -1.3952 5 1 1.5009 2.6213 0.7989 6 1 3.5937 1.4130 0.5961 7 6 2.0045 -1.1941 0.0005 8 1 1.4671 -2.1279 -0.0739 9 6 3.5080 -1.1960 0.1049 10 6 4.2523 -0.5706 -1.0765 11 6 4.3183 -1.5762 -2.2277 12 6 4.8818 -0.8860 -3.4431 13 8 4.1642 -0.6344 -4.3820 14 8 6.1810 -0.5508 -3.4825 15 6 5.2403 -2.6987 -1.8362 16 6 5.9863 -3.1819 -3.0976 17 6 5.1575 -4.0462 -3.9307 18 6 3.8934 -3.3242 -4.4424 19 6 2.8815 -3.2872 -3.3298 20 7 2.9470 -2.0402 -2.5353 21 6 4.1201 -1.0242 1.4965 22 6 4.1660 -2.3876 0.8036 23 1 -0.4850 0.8400 -0.0004 24 1 5.2633 -0.3037 -0.7687 25 1 3.7245 0.3244 -1.4057 26 1 6.4963 -0.1093 -4.2831 27 1 4.6595 -3.5203 -1.4170 28 1 5.9598 -2.3416 -1.0995 29 1 6.8766 -3.7322 -2.7930 30 1 6.2917 -2.3140 -3.6822 31 1 5.7441 -4.3815 -4.7860 32 1 4.8548 -4.9157 -3.3470 33 1 4.1479 -2.3069 -4.7400 34 1 3.4817 -3.8658 -5.2940 35 1 1.8836 -3.3784 -3.7590 36 1 3.0570 -4.1343 -2.6667 37 1 2.4057 -1.3069 -2.9680 38 1 5.0532 -0.4656 1.5704 39 1 3.4355 -0.9092 2.3368 40 1 3.5115 -3.1698 1.1881 41 1 5.1292 -2.7259 0.4217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722757963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:54 Heat of formation + Delta-G solvation = -53.018424 kcal Electronic energy + Delta-G solvation = -22972.319661 eV Core-core repulsion = 19853.316930 eV Total energy + Delta-G solvation = -3119.002731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.65889 -39.45271 -38.08502 -37.34585 -34.48137 -34.10116 -33.49453 -29.28616 -27.74153 -26.63110 -25.60417 -23.85393 -22.74161 -21.52178 -20.73185 -20.23697 -19.04138 -18.39116 -17.60483 -17.27889 -16.88293 -16.40228 -15.76012 -15.39144 -14.97313 -14.93848 -14.74736 -14.46254 -14.16224 -13.78058 -13.70017 -13.47286 -13.23033 -12.88909 -12.61398 -12.55730 -12.13866 -11.97874 -11.83719 -11.73893 -11.47096 -11.23296 -11.17795 -11.12619 -10.95498 -10.64572 -10.40831 -9.99582 -9.16119 -8.07004 -6.00608 1.09742 1.35192 1.42219 1.51845 2.10472 2.48714 3.10338 3.21356 3.47171 3.78759 3.94597 3.99337 4.10151 4.18853 4.23319 4.37046 4.49402 4.57039 4.64355 4.70431 4.76673 4.85249 4.88296 4.99726 5.02748 5.08602 5.15644 5.20292 5.27536 5.32203 5.34208 5.36982 5.53504 5.63658 5.65639 5.70095 5.93132 6.29048 6.46155 6.62490 6.95073 7.01936 7.58862 9.09502 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.008696 C = 0.008489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.618538 B = 3219.230268 C = 3297.478620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C 0.013 3.987 3 Si 0.916 3.084 4 H -0.292 1.292 5 H -0.309 1.309 6 H -0.224 1.224 7 C -0.409 4.409 8 H 0.036 0.964 9 C 0.002 3.998 10 C -0.073 4.073 11 C 0.154 3.846 12 C 0.466 3.534 13 O -0.543 6.543 14 O -0.499 6.499 15 C -0.100 4.100 16 C -0.153 4.153 17 C -0.113 4.113 18 C -0.193 4.193 19 C 0.066 3.934 20 N -0.645 5.645 21 C -0.204 4.204 22 C -0.162 4.162 23 H 0.254 0.746 24 H 0.084 0.916 25 H 0.030 0.970 26 H 0.417 0.583 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.337 0.663 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.672 -5.285 -6.787 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.181 4.181 3 Si 0.744 3.256 4 H -0.219 1.219 5 H -0.238 1.238 6 H -0.146 1.146 7 C -0.448 4.448 8 H 0.054 0.946 9 C 0.001 3.999 10 C -0.111 4.111 11 C 0.060 3.940 12 C 0.310 3.690 13 O -0.435 6.435 14 O -0.311 6.311 15 C -0.138 4.138 16 C -0.190 4.190 17 C -0.150 4.150 18 C -0.232 4.232 19 C -0.063 4.063 20 N -0.276 5.276 21 C -0.242 4.242 22 C -0.199 4.199 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.049 0.951 26 H 0.278 0.722 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.156 0.844 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.181 -5.657 -6.101 18.195 hybrid contribution -0.427 1.751 -1.550 2.377 sum 15.753 -3.907 -7.651 17.944 Atomic orbital electron populations 1.70044 1.07958 1.26673 1.55514 1.25519 0.94852 1.01631 0.96117 0.86286 0.81477 0.80736 0.77106 1.21900 1.23766 1.14621 1.20238 0.88835 0.91937 1.43758 0.94589 1.18928 0.92692 0.99695 0.88582 1.21526 0.99696 0.95487 0.94399 1.20684 0.89176 0.95466 0.88690 1.25376 0.79885 0.73999 0.89779 1.90560 1.60959 1.52462 1.39486 1.84700 1.26238 1.71527 1.48634 1.21661 0.96907 0.96598 0.98591 1.21227 0.99480 1.01783 0.96482 1.20533 0.95903 0.98842 0.99747 1.22736 0.97568 1.03853 0.98997 1.21749 0.98548 0.92641 0.93317 1.60433 1.08980 1.07099 1.51062 1.23192 1.01832 1.01443 0.97733 1.22997 1.01814 0.90747 1.04316 0.93660 0.89722 0.95141 0.72200 0.89623 0.88654 0.89469 0.89935 0.91363 0.91620 0.89763 0.91400 0.92553 0.91020 0.84373 0.88860 0.91528 0.91245 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.34 13.96 21.45 0.30 -60.04 16 2 C 0.01 0.75 5.47 84.66 0.46 1.22 16 3 Si 0.92 44.79 24.73 68.60 1.70 46.49 16 4 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 5 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 6 H -0.22 -9.68 5.90 99.48 0.59 -9.09 16 7 C -0.41 -21.97 7.93 25.60 0.20 -21.77 16 8 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 9 C 0.00 0.08 0.57 -52.93 -0.03 0.05 16 10 C -0.07 -2.74 3.50 30.59 0.11 -2.63 16 11 C 0.15 5.08 0.56 1.74 0.00 5.08 16 12 C 0.47 14.36 4.14 71.24 0.29 14.65 16 13 O -0.54 -19.65 14.01 21.98 0.31 -19.34 16 14 O -0.50 -11.02 10.85 -51.46 -0.56 -11.58 16 15 C -0.10 -2.62 3.03 30.21 0.09 -2.53 16 16 C -0.15 -3.30 5.09 28.86 0.15 -3.15 16 17 C -0.11 -2.50 5.30 28.85 0.15 -2.35 16 18 C -0.19 -5.34 5.62 30.21 0.17 -5.17 16 19 C 0.07 2.14 6.01 85.26 0.51 2.65 16 20 N -0.65 -24.85 4.24 -477.44 -2.02 -26.87 16 21 C -0.20 -7.76 8.73 30.59 0.27 -7.49 16 22 C -0.16 -5.71 8.49 30.59 0.26 -5.45 16 23 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 24 H 0.08 2.68 7.63 -2.39 -0.02 2.67 16 25 H 0.03 1.30 4.65 -2.39 -0.01 1.28 16 26 H 0.42 5.51 9.10 -68.16 -0.62 4.89 16 27 H 0.09 2.40 6.17 -2.39 -0.01 2.39 16 28 H 0.10 2.22 6.15 -2.39 -0.01 2.20 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.81 4.00 -0.26 0.00 1.81 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.40 7.51 -2.38 -0.02 1.38 16 33 H 0.08 2.66 3.28 -30.76 -0.10 2.55 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.07 2.23 6.58 -2.39 -0.02 2.22 16 37 H 0.34 14.87 8.04 -89.69 -0.72 14.14 16 38 H 0.09 3.04 8.09 -2.38 -0.02 3.02 16 39 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.11 3.17 5.26 -2.38 -0.01 3.15 16 Total: -1.00 -67.59 293.98 1.88 -65.70 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.48 Total: 32.53 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 2.64 Total: -26.89 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -1.72 Total: -86.91 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.25 Total: -30.92 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.70 Total: 46.49 kcal Total: -67.59 1.88 -65.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722757963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.685 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds