Wall clock time and date at job start Mon Mar 30 2020 06:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47330 * 2 1 4 4 N 1.46907 * 109.46768 * 119.99947 * 2 1 3 5 5 C 1.46893 * 111.00020 * 72.62981 * 4 2 1 6 6 C 1.53003 * 109.47170 * 66.04637 * 5 4 2 7 7 O 1.42900 * 109.47355 * 64.99943 * 6 5 4 8 8 C 1.42898 * 113.99869 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.46834 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00062 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99875 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00088 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47381 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47298 * 119.99911 * 13 11 9 16 16 H 1.48493 * 109.47293 * 239.99812 * 13 11 9 17 17 C 1.46902 * 111.00205 * 308.67429 * 4 2 1 18 18 C 1.50690 * 109.47071 * 199.84350 * 17 4 2 19 19 C 1.41387 * 126.58448 * 84.41953 * 18 17 4 20 20 C 1.34514 * 106.84286 * 180.26250 * 19 18 17 21 21 O 1.34303 * 108.41952 * 359.62670 * 20 19 18 22 22 C 1.34305 * 109.47787 * 0.38173 * 21 20 19 23 23 H 1.09000 * 109.47084 * 300.00288 * 1 2 3 24 24 H 1.09003 * 109.46797 * 59.99830 * 1 2 3 25 25 H 1.08997 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47084 * 239.99712 * 2 1 3 27 27 H 1.08998 * 109.46976 * 174.30399 * 3 2 1 28 28 H 1.09000 * 109.46916 * 294.30337 * 3 2 1 29 29 H 1.08997 * 109.46878 * 54.30193 * 3 2 1 30 30 H 1.08997 * 109.47274 * 186.04335 * 5 4 2 31 31 H 1.09002 * 109.47323 * 306.04727 * 5 4 2 32 32 H 1.09007 * 109.47073 * 185.00247 * 6 5 4 33 33 H 1.09001 * 109.46789 * 304.99837 * 6 5 4 34 34 H 1.08994 * 109.47472 * 299.99924 * 8 7 6 35 35 H 1.09000 * 109.47401 * 60.00355 * 8 7 6 36 36 H 0.97006 * 120.00362 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.47041 * 79.84130 * 17 4 2 38 38 H 1.09003 * 109.47061 * 319.84413 * 17 4 2 39 39 H 1.07998 * 126.57421 * 359.97438 * 19 18 17 40 40 H 1.07997 * 125.79021 * 179.77579 * 20 19 18 41 41 H 1.08001 * 125.79161 * 179.78331 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.8091 -2.1424 1.0931 6 6 2.6809 -2.7032 -0.0322 7 8 4.0595 -2.5454 0.3094 8 6 4.9638 -3.0392 -0.6807 9 6 6.3818 -2.8220 -0.2188 10 1 6.5732 -2.3540 0.7356 11 6 7.4348 -3.2206 -1.0146 12 7 7.2018 -3.7899 -2.1769 13 14 9.1924 -2.9519 -0.4417 14 1 9.1840 -2.2966 0.8908 15 1 9.8873 -4.2609 -0.3458 16 1 9.9031 -2.0844 -1.4150 17 6 1.3871 -0.1563 2.4121 18 6 2.2238 -0.5113 3.6141 19 6 3.3458 0.1991 4.0993 20 6 3.7905 -0.4661 5.1806 21 8 2.9969 -1.5312 5.3796 22 6 2.0469 -1.5653 4.4309 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1253 1.4441 0.1020 28 1 1.7624 1.9260 -0.9366 29 1 1.5959 1.9849 0.8346 30 1 2.0807 -2.6191 2.0349 31 1 0.7602 -2.3421 0.8740 32 1 2.4595 -3.7615 -0.1704 33 1 2.4717 -2.1646 -0.9565 34 1 4.7900 -4.1044 -0.8327 35 1 4.8020 -2.5073 -1.6182 36 1 7.9426 -4.0700 -2.7371 37 1 0.3914 -0.5858 2.5228 38 1 1.3083 0.9279 2.3317 39 1 3.7678 1.1002 3.6794 40 1 4.6400 -0.1893 5.7872 41 1 1.2722 -2.3122 4.3394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723738211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:17 Heat of formation + Delta-G solvation = -28.201627 kcal Electronic energy + Delta-G solvation = -20906.151756 eV Core-core repulsion = 17788.225162 eV Total energy + Delta-G solvation = -3117.926594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31531 -38.74995 -36.25948 -33.54020 -32.72454 -31.61510 -29.89708 -28.47156 -27.17524 -26.74484 -24.92621 -22.34936 -22.08102 -21.31771 -20.43281 -19.02173 -17.32825 -16.32476 -15.95796 -15.86578 -15.53229 -15.12583 -14.66361 -14.26182 -14.09665 -13.99785 -13.49729 -13.15702 -12.90002 -12.56343 -12.31100 -12.15782 -11.89879 -11.85899 -11.57863 -11.44500 -11.06761 -10.92484 -10.75835 -10.70669 -10.60312 -10.23815 -9.91042 -9.42339 -8.98936 -8.71564 -8.35608 -8.05295 -7.93638 -6.04083 -4.04299 1.97253 2.80006 3.33337 3.34413 3.39502 3.46945 4.19887 4.41870 4.88821 4.89961 5.00607 5.04584 5.15073 5.23282 5.32505 5.33103 5.43039 5.55947 5.59928 5.67911 5.78804 5.83127 5.89665 5.93910 5.99584 6.10900 6.14112 6.22094 6.32666 6.35262 6.38902 6.47226 6.70341 7.18960 7.29477 7.36018 7.40987 7.52236 7.88793 8.25500 8.71777 9.11657 9.60375 11.07793 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.005587 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.593511 B = 5010.789898 C = 6092.166582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 C -0.141 4.141 4 N -0.510 5.510 5 C 0.058 3.942 6 C 0.067 3.933 7 O -0.376 6.376 8 C 0.194 3.806 9 C -0.506 4.506 10 H 0.066 0.934 11 C 0.054 3.946 12 N -0.901 5.901 13 Si 0.905 3.095 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.122 3.878 18 C -0.159 4.159 19 C -0.187 4.187 20 C -0.049 4.049 21 O -0.180 6.180 22 C -0.045 4.045 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.001 0.999 35 H 0.002 0.998 36 H 0.262 0.738 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.145 0.855 40 H 0.198 0.802 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.496 8.159 9.407 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.037 4.037 3 C -0.198 4.198 4 N -0.234 5.234 5 C -0.070 4.070 6 C -0.011 4.011 7 O -0.296 6.296 8 C 0.119 3.881 9 C -0.545 4.545 10 H 0.085 0.915 11 C -0.146 4.146 12 N -0.541 5.541 13 Si 0.733 3.267 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.005 4.005 18 C -0.161 4.161 19 C -0.207 4.207 20 C -0.116 4.116 21 O -0.076 6.076 22 C -0.113 4.113 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.020 0.980 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.163 0.837 40 H 0.215 0.785 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.791 8.047 9.687 18.676 hybrid contribution 0.059 -0.174 -0.473 0.507 sum -13.732 7.873 9.214 18.316 Atomic orbital electron populations 1.22520 0.98144 1.01712 1.02096 1.21796 0.91854 0.95851 0.94217 1.21811 1.02687 0.94610 1.00714 1.62040 1.57436 1.03226 1.00662 1.22176 0.96138 0.88115 1.00536 1.22261 0.85805 0.97349 0.95678 1.87975 1.12415 1.83181 1.45991 1.20161 0.88088 0.92837 0.86967 1.21108 0.89468 1.38998 1.04902 0.91528 1.24940 0.99600 0.95237 0.94833 1.69976 1.31832 1.41395 1.10900 0.86317 0.83698 0.77836 0.78873 1.19477 1.20921 1.20907 1.20389 0.93033 1.00081 0.87020 1.20286 0.99729 0.97456 0.98666 1.21637 0.98303 1.03097 0.97628 1.23931 0.98014 0.88325 1.01322 1.84028 1.34976 1.42266 1.46317 1.23727 0.95325 1.01097 0.91152 0.92568 0.92218 0.92745 0.89334 0.91207 0.92654 0.93196 0.90236 0.94369 0.94599 0.94649 0.98162 0.98030 0.92855 0.94415 0.89981 0.83736 0.78506 0.78939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 8.50 37.16 0.32 -1.64 16 2 C 0.07 0.95 2.79 -67.71 -0.19 0.76 16 3 C -0.14 -1.74 9.10 37.16 0.34 -1.40 16 4 N -0.51 -7.71 4.30 -228.08 -0.98 -8.69 16 5 C 0.06 0.90 5.07 -3.83 -0.02 0.88 16 6 C 0.07 1.29 6.01 37.16 0.22 1.52 16 7 O -0.38 -9.49 10.27 -35.23 -0.36 -9.85 16 8 C 0.19 5.51 5.69 36.01 0.20 5.72 16 9 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16 10 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 11 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 13 Si 0.91 22.43 29.54 -169.99 -5.02 17.41 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.12 1.55 4.04 -4.98 -0.02 1.53 16 18 C -0.16 -2.23 5.22 -104.74 -0.55 -2.77 16 19 C -0.19 -2.64 10.87 -39.70 -0.43 -3.07 16 20 C -0.05 -0.64 12.09 29.42 0.36 -0.28 16 21 O -0.18 -2.56 10.65 5.71 0.06 -2.50 16 22 C -0.04 -0.59 11.06 29.42 0.33 -0.26 16 23 H 0.06 0.54 6.68 -51.93 -0.35 0.20 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.57 6.69 -51.93 -0.35 0.22 16 26 H 0.09 1.34 5.94 -51.93 -0.31 1.04 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.55 6.58 -51.93 -0.34 0.20 16 30 H 0.08 1.29 6.68 -51.93 -0.35 0.94 16 31 H 0.04 0.49 6.54 -51.93 -0.34 0.15 16 32 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.04 0.66 6.13 -51.93 -0.32 0.35 16 34 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 35 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.04 0.42 7.34 -51.93 -0.38 0.04 16 38 H 0.08 0.97 6.01 -51.93 -0.31 0.66 16 39 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.20 1.88 8.06 -52.49 -0.42 1.45 16 41 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -33.65 332.41 -6.81 -40.46 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.39 Total: -1.73 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 0.13 Total: -13.25 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.24 Total: -35.56 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.30 Total: -12.35 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.65 -6.81 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723738211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.262 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds