Wall clock time and date at job start Mon Mar 30 2020 06:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47330 * 2 1 4 4 N 1.46907 * 109.46768 * 119.99947 * 2 1 3 5 5 C 1.46893 * 111.00020 * 72.62981 * 4 2 1 6 6 C 1.53003 * 109.47170 * 66.04637 * 5 4 2 7 7 O 1.42900 * 109.47355 * 64.99943 * 6 5 4 8 8 C 1.42898 * 113.99869 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.46834 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00062 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99875 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00088 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47381 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47298 * 119.99911 * 13 11 9 16 16 H 1.48493 * 109.47293 * 239.99812 * 13 11 9 17 17 C 1.46902 * 111.00205 * 308.67429 * 4 2 1 18 18 C 1.50690 * 109.47071 * 199.84350 * 17 4 2 19 19 C 1.41387 * 126.58448 * 84.41953 * 18 17 4 20 20 C 1.34514 * 106.84286 * 180.26250 * 19 18 17 21 21 O 1.34303 * 108.41952 * 359.62670 * 20 19 18 22 22 C 1.34305 * 109.47787 * 0.38173 * 21 20 19 23 23 H 1.09000 * 109.47084 * 300.00288 * 1 2 3 24 24 H 1.09003 * 109.46797 * 59.99830 * 1 2 3 25 25 H 1.08997 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47084 * 239.99712 * 2 1 3 27 27 H 1.08998 * 109.46976 * 174.30399 * 3 2 1 28 28 H 1.09000 * 109.46916 * 294.30337 * 3 2 1 29 29 H 1.08997 * 109.46878 * 54.30193 * 3 2 1 30 30 H 1.08997 * 109.47274 * 186.04335 * 5 4 2 31 31 H 1.09002 * 109.47323 * 306.04727 * 5 4 2 32 32 H 1.09007 * 109.47073 * 185.00247 * 6 5 4 33 33 H 1.09001 * 109.46789 * 304.99837 * 6 5 4 34 34 H 1.08994 * 109.47472 * 299.99924 * 8 7 6 35 35 H 1.09000 * 109.47401 * 60.00355 * 8 7 6 36 36 H 0.97006 * 120.00362 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.47041 * 79.84130 * 17 4 2 38 38 H 1.09003 * 109.47061 * 319.84413 * 17 4 2 39 39 H 1.07998 * 126.57421 * 359.97438 * 19 18 17 40 40 H 1.07997 * 125.79021 * 179.77579 * 20 19 18 41 41 H 1.08001 * 125.79161 * 179.78331 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.8091 -2.1424 1.0931 6 6 2.6809 -2.7032 -0.0322 7 8 4.0595 -2.5454 0.3094 8 6 4.9638 -3.0392 -0.6807 9 6 6.3818 -2.8220 -0.2188 10 1 6.5732 -2.3540 0.7356 11 6 7.4348 -3.2206 -1.0146 12 7 7.2018 -3.7899 -2.1769 13 14 9.1924 -2.9519 -0.4417 14 1 9.1840 -2.2966 0.8908 15 1 9.8873 -4.2609 -0.3458 16 1 9.9031 -2.0844 -1.4150 17 6 1.3871 -0.1563 2.4121 18 6 2.2238 -0.5113 3.6141 19 6 3.3458 0.1991 4.0993 20 6 3.7905 -0.4661 5.1806 21 8 2.9969 -1.5312 5.3796 22 6 2.0469 -1.5653 4.4309 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1253 1.4441 0.1020 28 1 1.7624 1.9260 -0.9366 29 1 1.5959 1.9849 0.8346 30 1 2.0807 -2.6191 2.0349 31 1 0.7602 -2.3421 0.8740 32 1 2.4595 -3.7615 -0.1704 33 1 2.4717 -2.1646 -0.9565 34 1 4.7900 -4.1044 -0.8327 35 1 4.8020 -2.5073 -1.6182 36 1 7.9426 -4.0700 -2.7371 37 1 0.3914 -0.5858 2.5228 38 1 1.3083 0.9279 2.3317 39 1 3.7678 1.1002 3.6794 40 1 4.6400 -0.1893 5.7872 41 1 1.2722 -2.3122 4.3394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723738211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:17 Heat of formation + Delta-G solvation = -50.772684 kcal Electronic energy + Delta-G solvation = -20907.130510 eV Core-core repulsion = 17788.225162 eV Total energy + Delta-G solvation = -3118.905348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.33236 -39.92682 -38.10523 -34.94685 -34.55083 -32.86479 -31.08782 -29.82906 -28.79663 -27.99514 -26.09758 -24.47421 -23.50674 -22.34712 -21.47864 -20.11820 -18.62521 -18.34855 -17.40111 -17.17005 -16.92398 -16.50106 -16.13975 -15.74403 -15.62564 -15.15289 -14.77820 -14.59820 -14.17014 -13.64677 -13.58493 -13.45084 -13.23962 -13.11919 -12.95719 -12.75496 -12.70412 -12.60595 -12.31465 -12.04538 -11.91487 -11.82998 -11.48798 -11.21451 -10.84024 -10.48797 -10.14969 -9.36473 -9.00676 -8.32147 -6.43750 0.96531 1.38094 1.39878 1.54802 1.75538 2.34789 2.40015 3.01263 3.09544 3.29939 3.95395 3.95874 4.05629 4.14745 4.19493 4.26380 4.33518 4.44735 4.54245 4.59944 4.65370 4.70004 4.79489 4.82305 4.87774 4.93989 5.01320 5.01897 5.14249 5.19525 5.22083 5.31615 5.38226 5.45246 5.55838 5.69123 5.98237 6.22541 6.31261 6.34536 6.58396 6.88382 7.28715 8.80600 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.005587 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.593511 B = 5010.789898 C = 6092.166582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.136 4.136 4 N -0.538 5.538 5 C 0.069 3.931 6 C 0.057 3.943 7 O -0.393 6.393 8 C 0.211 3.789 9 C -0.542 4.542 10 H 0.056 0.944 11 C 0.006 3.994 12 N -0.931 5.931 13 Si 0.981 3.019 14 H -0.266 1.266 15 H -0.269 1.269 16 H -0.270 1.270 17 C 0.128 3.872 18 C -0.179 4.179 19 C -0.214 4.214 20 C -0.053 4.053 21 O -0.193 6.193 22 C -0.050 4.050 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.038 0.962 34 H -0.018 1.018 35 H -0.020 1.020 36 H 0.270 0.730 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.227 0.773 41 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.989 8.658 10.218 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.040 4.040 3 C -0.193 4.193 4 N -0.262 5.262 5 C -0.059 4.059 6 C -0.020 4.020 7 O -0.312 6.312 8 C 0.136 3.864 9 C -0.580 4.580 10 H 0.075 0.925 11 C -0.192 4.192 12 N -0.571 5.571 13 Si 0.804 3.196 14 H -0.190 1.190 15 H -0.194 1.194 16 H -0.195 1.195 17 C 0.002 3.998 18 C -0.181 4.181 19 C -0.234 4.234 20 C -0.119 4.119 21 O -0.089 6.089 22 C -0.118 4.118 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.056 0.944 34 H -0.001 1.001 35 H -0.002 1.002 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.164 0.836 40 H 0.243 0.757 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.315 8.551 10.497 19.703 hybrid contribution 0.153 -0.321 -0.757 0.837 sum -14.162 8.230 9.740 19.057 Atomic orbital electron populations 1.22407 0.95411 1.02261 1.03348 1.21786 0.94008 0.95610 0.92569 1.21770 1.00704 0.94611 1.02256 1.61942 1.59179 1.02974 1.02129 1.22050 0.96792 0.88604 0.98452 1.22633 0.83313 0.98289 0.97811 1.87931 1.15009 1.83036 1.45239 1.19755 0.88617 0.91306 0.86764 1.21377 0.91018 1.40494 1.05124 0.92539 1.25944 1.04488 0.94115 0.94632 1.70075 1.33815 1.41341 1.11872 0.85165 0.77329 0.78460 0.78631 1.19045 1.19448 1.19484 1.20397 0.93522 1.00545 0.85375 1.20580 1.00120 0.97927 0.99426 1.21901 0.99144 1.03782 0.98525 1.24528 0.98363 0.87685 1.01363 1.84031 1.35417 1.42666 1.46815 1.24298 0.95490 1.01414 0.90592 0.91191 0.91079 0.92503 0.91962 0.94261 0.91181 0.91488 0.90866 0.90936 0.93956 0.94411 1.00069 1.00188 0.92064 0.92194 0.89199 0.83613 0.75704 0.76264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.50 71.98 0.61 -2.61 16 2 C 0.07 1.76 2.79 44.92 0.13 1.88 16 3 C -0.14 -3.27 9.10 71.98 0.65 -2.61 16 4 N -0.54 -15.77 4.30 -875.52 -3.77 -19.53 16 5 C 0.07 2.06 5.07 86.31 0.44 2.50 16 6 C 0.06 2.22 6.01 71.98 0.43 2.65 16 7 O -0.39 -20.41 10.27 -148.98 -1.53 -21.94 16 8 C 0.21 12.45 5.69 71.24 0.41 12.86 16 9 C -0.54 -33.84 9.43 25.60 0.24 -33.60 16 10 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 11 C 0.01 0.38 5.46 84.66 0.46 0.84 16 12 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 13 Si 0.98 45.87 29.54 68.60 2.03 47.90 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 C 0.13 3.02 4.04 85.55 0.35 3.36 16 18 C -0.18 -4.80 5.22 -19.94 -0.10 -4.91 16 19 C -0.21 -5.97 10.87 22.19 0.24 -5.72 16 20 C -0.05 -1.34 12.09 66.97 0.81 -0.53 16 21 O -0.19 -5.32 10.65 -2.50 -0.03 -5.34 16 22 C -0.05 -1.25 11.06 66.97 0.74 -0.51 16 23 H 0.07 1.11 6.68 -2.39 -0.02 1.09 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.02 6.69 -2.39 -0.02 1.00 16 26 H 0.06 1.91 5.94 -2.39 -0.01 1.90 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.35 6.58 -2.39 -0.02 1.34 16 30 H 0.07 2.29 6.68 -2.39 -0.02 2.27 16 31 H 0.07 1.68 6.54 -2.39 -0.02 1.66 16 32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.04 1.45 6.13 -2.39 -0.01 1.44 16 34 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 35 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 36 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 37 H 0.06 1.14 7.34 -2.39 -0.02 1.12 16 38 H 0.09 1.94 6.01 -2.39 -0.01 1.92 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.23 4.01 8.06 -2.91 -0.02 3.98 16 41 H 0.22 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -73.46 332.41 3.39 -70.07 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.00 Total: 12.47 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 5.40 Total: -26.40 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -3.48 Total: -76.76 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.56 Total: -27.28 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.46 3.39 -70.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723738211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.298 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds