Wall clock time and date at job start Mon Mar 30 2020 06:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46935 * 2 1 4 4 N 1.46892 * 109.47042 * 174.86471 * 3 2 1 5 5 C 1.46905 * 111.00103 * 199.59877 * 4 3 2 6 6 C 1.53001 * 109.47080 * 66.04777 * 5 4 3 7 7 O 1.42896 * 109.47058 * 65.00222 * 6 5 4 8 8 C 1.42906 * 113.99877 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47094 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99986 * 179.97438 * 9 8 7 12 12 N 1.31508 * 119.99930 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99683 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47022 * 89.99728 * 13 11 9 15 15 H 1.48497 * 109.46836 * 209.99498 * 13 11 9 16 16 H 1.48501 * 109.47303 * 329.99657 * 13 11 9 17 17 C 1.46904 * 111.00209 * 75.64340 * 4 3 2 18 18 C 1.50693 * 109.47391 * 199.73565 * 17 4 3 19 19 C 1.41384 * 126.58080 * 84.63611 * 18 17 4 20 20 C 1.34511 * 106.84276 * 179.73163 * 19 18 17 21 21 O 1.34306 * 108.42085 * 0.02562 * 20 19 18 22 22 C 1.34301 * 109.47510 * 359.97438 * 21 20 19 23 23 H 1.08990 * 109.47446 * 59.99689 * 1 2 3 24 24 H 1.09006 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46733 * 299.98902 * 1 2 3 26 26 H 1.09003 * 109.46733 * 240.01098 * 2 1 3 27 27 H 1.08997 * 109.47438 * 120.00726 * 2 1 3 28 28 H 1.09002 * 109.46522 * 54.86684 * 3 2 1 29 29 H 1.09001 * 109.46963 * 294.86777 * 3 2 1 30 30 H 1.09002 * 109.47105 * 186.05166 * 5 4 3 31 31 H 1.09001 * 109.46825 * 306.04287 * 5 4 3 32 32 H 1.08997 * 109.46689 * 185.00550 * 6 5 4 33 33 H 1.09002 * 109.47046 * 304.99982 * 6 5 4 34 34 H 1.09002 * 109.46876 * 300.00561 * 8 7 6 35 35 H 1.09000 * 109.46932 * 59.99364 * 8 7 6 36 36 H 0.97007 * 119.99533 * 180.02562 * 12 11 9 37 37 H 1.09007 * 109.46820 * 79.73166 * 17 4 3 38 38 H 1.08998 * 109.46865 * 319.73584 * 17 4 3 39 39 H 1.07999 * 126.57821 * 359.77678 * 19 18 17 40 40 H 1.07998 * 125.79104 * 179.97438 * 20 19 18 41 41 H 1.08000 * 125.79101 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 0.1240 5 6 3.9911 2.7502 0.5880 6 6 3.5044 2.9977 2.0173 7 8 4.0979 2.0390 2.8952 8 6 3.7067 2.1822 4.2622 9 6 4.3877 1.1254 5.0929 10 1 5.0531 0.4155 4.6240 11 6 4.1622 1.0652 6.4518 12 7 4.7562 0.1426 7.1767 13 14 3.0120 2.2935 7.2629 14 1 1.6289 1.7527 7.2605 15 1 3.4483 2.5307 8.6624 16 1 3.0443 3.5734 6.5106 17 6 4.1400 1.0656 -1.1447 18 6 5.5519 0.6092 -0.8820 19 6 5.9603 -0.6890 -0.4989 20 6 7.2996 -0.6566 -0.3785 21 8 7.7217 0.5856 -0.6662 22 6 6.6662 1.3574 -0.9724 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6034 1.9821 0.8405 29 1 1.7536 1.9291 -0.9324 30 1 5.0809 2.7592 0.5685 31 1 3.6096 3.5339 -0.0665 32 1 3.7902 4.0021 2.3296 33 1 2.4193 2.9008 2.0536 34 1 3.9962 3.1698 4.6213 35 1 2.6258 2.0682 4.3446 36 1 4.5972 0.1002 8.1327 37 1 4.1547 1.9253 -1.8148 38 1 3.5761 0.2549 -1.6061 39 1 5.3199 -1.5431 -0.3351 40 1 7.9288 -1.4881 -0.0973 41 1 6.7052 2.4018 -1.2445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723749468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:20 Heat of formation + Delta-G solvation = -28.900547 kcal Electronic energy + Delta-G solvation = -20694.124641 eV Core-core repulsion = 17576.167740 eV Total energy + Delta-G solvation = -3117.956901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.30690 -38.32150 -36.36400 -33.78588 -32.82451 -32.34052 -29.96854 -29.12509 -27.41493 -26.44896 -24.17484 -21.77412 -21.65426 -21.33757 -20.55529 -19.91132 -17.36414 -16.79290 -16.03447 -15.71127 -15.56864 -15.09835 -14.89412 -14.53064 -14.21465 -14.12703 -13.60750 -13.03813 -12.72819 -12.72586 -12.53834 -12.36054 -12.11266 -11.78295 -11.76623 -11.50949 -11.16523 -10.92546 -10.79973 -10.60805 -10.54503 -10.27115 -9.80077 -9.44925 -9.09120 -8.74973 -8.38067 -8.34189 -8.03395 -6.05377 -4.03103 1.97706 2.80072 3.27754 3.34417 3.35196 3.36226 4.13822 4.40384 4.71911 4.88953 5.00393 5.03026 5.11735 5.17720 5.25922 5.35494 5.45592 5.49258 5.59062 5.62155 5.64927 5.79066 5.86354 5.90774 5.96298 6.00862 6.10420 6.22057 6.23738 6.30868 6.35409 6.48870 6.67583 6.70632 7.07321 7.25628 7.28642 7.35574 7.67607 8.13930 8.76854 9.08804 9.54797 11.07921 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.005619 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.572296 B = 4981.459007 C = 6060.472378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.053 3.947 4 N -0.519 5.519 5 C 0.060 3.940 6 C 0.062 3.938 7 O -0.361 6.361 8 C 0.168 3.832 9 C -0.512 4.512 10 H 0.082 0.918 11 C 0.071 3.929 12 N -0.897 5.897 13 Si 0.875 3.125 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.267 1.267 17 C 0.124 3.876 18 C -0.160 4.160 19 C -0.187 4.187 20 C -0.047 4.047 21 O -0.180 6.180 22 C -0.044 4.044 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.038 0.962 34 H -0.002 1.002 35 H -0.005 1.005 36 H 0.265 0.735 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.199 0.801 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 2.858 -19.227 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.074 4.074 4 N -0.243 5.243 5 C -0.068 4.068 6 C -0.016 4.016 7 O -0.279 6.279 8 C 0.092 3.908 9 C -0.550 4.550 10 H 0.101 0.899 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.701 3.299 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.192 1.192 17 C -0.003 4.003 18 C -0.162 4.162 19 C -0.206 4.206 20 C -0.114 4.114 21 O -0.075 6.075 22 C -0.113 4.113 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.163 0.837 40 H 0.216 0.784 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.545 2.392 -18.736 19.059 hybrid contribution -1.231 1.343 0.244 1.839 sum -3.776 3.736 -18.493 19.240 Atomic orbital electron populations 1.21733 0.96040 1.01570 1.01424 1.21508 0.94835 0.96534 1.02867 1.22215 0.87612 0.97574 1.00017 1.61796 1.04932 1.29526 1.28053 1.22141 1.01426 0.88771 0.94440 1.22367 0.96460 0.92527 0.90250 1.88041 1.68821 1.52714 1.18354 1.20568 0.94203 0.96700 0.79281 1.20898 1.27929 1.14485 0.91699 0.89947 1.24764 0.95880 0.95579 0.96791 1.69881 1.43392 1.33717 1.06611 0.86872 0.81593 0.82301 0.79099 1.19999 1.20850 1.19205 1.20387 0.90553 0.99177 0.90190 1.20236 0.95327 0.94349 1.06326 1.21635 0.94803 0.98450 1.05758 1.23956 0.95637 0.86038 1.05758 1.84032 1.35841 1.20378 1.67275 1.23716 0.84445 0.96796 1.06340 0.93329 0.92693 0.92611 0.92550 0.90347 0.90423 0.95424 0.89965 0.94466 0.94348 0.94445 0.98390 0.98731 0.92491 0.94503 0.90050 0.83684 0.78408 0.78946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.12 -1.50 5.98 -26.73 -0.16 -1.66 16 3 C 0.05 0.70 4.83 -3.83 -0.02 0.68 16 4 N -0.52 -7.75 4.30 -236.07 -1.02 -8.76 16 5 C 0.06 0.90 5.17 -3.82 -0.02 0.88 16 6 C 0.06 1.13 6.02 37.16 0.22 1.35 16 7 O -0.36 -8.77 10.27 -35.23 -0.36 -9.13 16 8 C 0.17 4.42 4.76 36.00 0.17 4.59 16 9 C -0.51 -15.70 9.99 -34.44 -0.34 -16.05 16 10 H 0.08 2.79 8.06 -52.49 -0.42 2.36 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 13 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 17 C 0.12 1.57 5.33 -4.98 -0.03 1.54 16 18 C -0.16 -2.24 5.21 -104.75 -0.55 -2.79 16 19 C -0.19 -2.68 10.87 -39.70 -0.43 -3.11 16 20 C -0.05 -0.62 12.09 29.41 0.36 -0.27 16 21 O -0.18 -2.58 10.65 5.71 0.06 -2.52 16 22 C -0.04 -0.59 11.06 29.42 0.33 -0.26 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.65 6.89 -51.93 -0.36 0.29 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.09 5.82 -51.93 -0.30 0.79 16 29 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16 30 H 0.08 1.29 6.67 -51.93 -0.35 0.94 16 31 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.65 6.08 -51.93 -0.32 0.33 16 34 H 0.00 -0.04 7.20 -51.93 -0.37 -0.41 16 35 H 0.00 -0.13 7.57 -51.93 -0.39 -0.52 16 36 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.04 0.40 8.00 -51.92 -0.42 -0.02 16 38 H 0.08 0.95 6.55 -51.93 -0.34 0.61 16 39 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.19 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -34.17 336.24 -7.00 -41.17 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.65 Total: -1.29 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.20 Total: -14.28 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.24 Total: -36.24 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.30 Total: -11.64 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.17 -7.00 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723749468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.270 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds