Wall clock time and date at job start Mon Mar 30 2020 06:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46935 * 2 1 4 4 N 1.46892 * 109.47042 * 174.86471 * 3 2 1 5 5 C 1.46905 * 111.00103 * 199.59877 * 4 3 2 6 6 C 1.53001 * 109.47080 * 66.04777 * 5 4 3 7 7 O 1.42896 * 109.47058 * 65.00222 * 6 5 4 8 8 C 1.42906 * 113.99877 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47094 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99986 * 179.97438 * 9 8 7 12 12 N 1.31508 * 119.99930 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99683 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47022 * 89.99728 * 13 11 9 15 15 H 1.48497 * 109.46836 * 209.99498 * 13 11 9 16 16 H 1.48501 * 109.47303 * 329.99657 * 13 11 9 17 17 C 1.46904 * 111.00209 * 75.64340 * 4 3 2 18 18 C 1.50693 * 109.47391 * 199.73565 * 17 4 3 19 19 C 1.41384 * 126.58080 * 84.63611 * 18 17 4 20 20 C 1.34511 * 106.84276 * 179.73163 * 19 18 17 21 21 O 1.34306 * 108.42085 * 0.02562 * 20 19 18 22 22 C 1.34301 * 109.47510 * 359.97438 * 21 20 19 23 23 H 1.08990 * 109.47446 * 59.99689 * 1 2 3 24 24 H 1.09006 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46733 * 299.98902 * 1 2 3 26 26 H 1.09003 * 109.46733 * 240.01098 * 2 1 3 27 27 H 1.08997 * 109.47438 * 120.00726 * 2 1 3 28 28 H 1.09002 * 109.46522 * 54.86684 * 3 2 1 29 29 H 1.09001 * 109.46963 * 294.86777 * 3 2 1 30 30 H 1.09002 * 109.47105 * 186.05166 * 5 4 3 31 31 H 1.09001 * 109.46825 * 306.04287 * 5 4 3 32 32 H 1.08997 * 109.46689 * 185.00550 * 6 5 4 33 33 H 1.09002 * 109.47046 * 304.99982 * 6 5 4 34 34 H 1.09002 * 109.46876 * 300.00561 * 8 7 6 35 35 H 1.09000 * 109.46932 * 59.99364 * 8 7 6 36 36 H 0.97007 * 119.99533 * 180.02562 * 12 11 9 37 37 H 1.09007 * 109.46820 * 79.73166 * 17 4 3 38 38 H 1.08998 * 109.46865 * 319.73584 * 17 4 3 39 39 H 1.07999 * 126.57821 * 359.77678 * 19 18 17 40 40 H 1.07998 * 125.79104 * 179.97438 * 20 19 18 41 41 H 1.08000 * 125.79101 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 0.1240 5 6 3.9911 2.7502 0.5880 6 6 3.5044 2.9977 2.0173 7 8 4.0979 2.0390 2.8952 8 6 3.7067 2.1822 4.2622 9 6 4.3877 1.1254 5.0929 10 1 5.0531 0.4155 4.6240 11 6 4.1622 1.0652 6.4518 12 7 4.7562 0.1426 7.1767 13 14 3.0120 2.2935 7.2629 14 1 1.6289 1.7527 7.2605 15 1 3.4483 2.5307 8.6624 16 1 3.0443 3.5734 6.5106 17 6 4.1400 1.0656 -1.1447 18 6 5.5519 0.6092 -0.8820 19 6 5.9603 -0.6890 -0.4989 20 6 7.2996 -0.6566 -0.3785 21 8 7.7217 0.5856 -0.6662 22 6 6.6662 1.3574 -0.9724 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6034 1.9821 0.8405 29 1 1.7536 1.9291 -0.9324 30 1 5.0809 2.7592 0.5685 31 1 3.6096 3.5339 -0.0665 32 1 3.7902 4.0021 2.3296 33 1 2.4193 2.9008 2.0536 34 1 3.9962 3.1698 4.6213 35 1 2.6258 2.0682 4.3446 36 1 4.5972 0.1002 8.1327 37 1 4.1547 1.9253 -1.8148 38 1 3.5761 0.2549 -1.6061 39 1 5.3199 -1.5431 -0.3351 40 1 7.9288 -1.4881 -0.0973 41 1 6.7052 2.4018 -1.2445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723749468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:19 Heat of formation + Delta-G solvation = -52.519364 kcal Electronic energy + Delta-G solvation = -20695.148830 eV Core-core repulsion = 17576.167740 eV Total energy + Delta-G solvation = -3118.981090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.35209 -39.53956 -38.00377 -34.89629 -34.77879 -33.65312 -31.28729 -30.42478 -29.26631 -27.41395 -25.34893 -23.93726 -22.77476 -22.38823 -21.64795 -20.95879 -19.03526 -18.40930 -17.42060 -17.17431 -16.84215 -16.49272 -16.05586 -15.94827 -15.61872 -15.42175 -14.81920 -14.71127 -14.06593 -13.94016 -13.82474 -13.61447 -13.39903 -13.23521 -12.82425 -12.75630 -12.62174 -12.54411 -12.18078 -11.92545 -11.81079 -11.72817 -11.45066 -11.25279 -10.91334 -10.53454 -10.25440 -9.39103 -9.05430 -8.36832 -6.44102 0.94321 1.31307 1.35045 1.45889 1.72945 2.29027 2.37827 2.95439 3.05687 3.21867 3.94278 3.96884 4.03445 4.12365 4.17644 4.29332 4.35472 4.46510 4.53348 4.54991 4.59675 4.61751 4.68255 4.74905 4.87533 4.89415 4.95846 4.98661 5.04863 5.19374 5.22402 5.34946 5.37314 5.45456 5.46180 5.66657 5.96106 6.21261 6.27584 6.31752 6.60085 6.83825 7.20662 8.80729 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.005619 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.572296 B = 4981.459007 C = 6060.472378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C 0.056 3.944 4 N -0.550 5.550 5 C 0.066 3.934 6 C 0.051 3.949 7 O -0.391 6.391 8 C 0.181 3.819 9 C -0.541 4.541 10 H 0.025 0.975 11 C 0.012 3.988 12 N -0.943 5.943 13 Si 0.956 3.044 14 H -0.259 1.259 15 H -0.272 1.272 16 H -0.246 1.246 17 C 0.129 3.871 18 C -0.179 4.179 19 C -0.215 4.215 20 C -0.054 4.054 21 O -0.193 6.193 22 C -0.048 4.048 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.008 0.992 35 H 0.005 0.995 36 H 0.272 0.728 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.144 0.856 40 H 0.225 0.775 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 5.229 -20.227 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.071 4.071 4 N -0.275 5.275 5 C -0.062 4.062 6 C -0.026 4.026 7 O -0.310 6.310 8 C 0.105 3.895 9 C -0.579 4.579 10 H 0.043 0.957 11 C -0.186 4.186 12 N -0.583 5.583 13 Si 0.777 3.223 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.170 1.170 17 C 0.003 3.997 18 C -0.181 4.181 19 C -0.235 4.235 20 C -0.121 4.121 21 O -0.089 6.089 22 C -0.116 4.116 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.162 0.838 40 H 0.241 0.759 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.311 4.763 -19.768 20.786 hybrid contribution -0.605 0.505 0.490 0.928 sum -4.917 5.268 -19.278 20.581 Atomic orbital electron populations 1.21696 0.94415 1.02122 1.02043 1.21466 0.96232 0.96331 1.01449 1.22205 0.86575 0.97566 1.00787 1.61703 1.06112 1.29870 1.29823 1.22086 1.00897 0.90172 0.93016 1.22766 0.97049 0.91921 0.90848 1.87997 1.69912 1.55192 1.17922 1.20248 0.93895 0.95179 0.80173 1.21145 1.28306 1.15297 0.93152 0.95674 1.25855 0.97662 0.97908 0.97129 1.70043 1.44997 1.35845 1.07399 0.85602 0.78951 0.79642 0.78093 1.18385 1.19665 1.16951 1.20402 0.89491 1.00261 0.89587 1.20552 0.96533 0.94259 1.06711 1.21902 0.95539 0.99173 1.06866 1.24507 0.95944 0.86473 1.05154 1.84032 1.36596 1.20809 1.67480 1.24342 0.83900 0.97887 1.05471 0.91241 0.92259 0.93365 0.91517 0.94214 0.91615 0.92667 0.90995 0.90616 0.92790 0.93384 0.97413 0.97729 0.91847 0.91973 0.89473 0.83821 0.75896 0.75940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.91 71.98 0.71 -2.15 16 2 C -0.12 -2.85 5.98 30.60 0.18 -2.67 16 3 C 0.06 1.35 4.83 86.31 0.42 1.77 16 4 N -0.55 -15.67 4.30 -900.78 -3.88 -19.54 16 5 C 0.07 1.83 5.17 86.30 0.45 2.27 16 6 C 0.05 1.77 6.02 71.98 0.43 2.21 16 7 O -0.39 -19.14 10.27 -148.98 -1.53 -20.67 16 8 C 0.18 9.49 4.76 71.23 0.34 9.83 16 9 C -0.54 -34.36 9.99 25.60 0.26 -34.10 16 10 H 0.02 1.81 8.06 -2.91 -0.02 1.79 16 11 C 0.01 0.74 5.47 84.66 0.46 1.20 16 12 N -0.94 -60.92 13.96 21.45 0.30 -60.62 16 13 Si 0.96 44.52 27.47 68.60 1.88 46.40 16 14 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 17 C 0.13 3.03 5.33 85.55 0.46 3.48 16 18 C -0.18 -4.90 5.21 -19.94 -0.10 -5.01 16 19 C -0.22 -6.33 10.87 22.19 0.24 -6.09 16 20 C -0.05 -1.47 12.09 66.97 0.81 -0.66 16 21 O -0.19 -5.52 10.65 -2.49 -0.03 -5.55 16 22 C -0.05 -1.22 11.06 66.97 0.74 -0.48 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.46 6.89 -2.39 -0.02 1.44 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.73 5.82 -2.39 -0.01 1.72 16 29 H 0.06 1.04 8.00 -2.39 -0.02 1.02 16 30 H 0.07 2.14 6.67 -2.39 -0.02 2.12 16 31 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.56 6.08 -2.39 -0.01 1.55 16 34 H 0.01 0.41 7.20 -2.39 -0.02 0.39 16 35 H 0.01 0.25 7.57 -2.39 -0.02 0.23 16 36 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 37 H 0.06 1.13 8.00 -2.38 -0.02 1.11 16 38 H 0.09 1.89 6.55 -2.39 -0.02 1.88 16 39 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.22 4.47 8.06 -2.91 -0.02 4.44 16 41 H 0.22 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -76.94 336.24 3.08 -73.86 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.93 Total: 16.52 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 5.39 Total: -30.40 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -3.58 Total: -80.16 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -1.56 Total: -26.22 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -76.94 3.08 -73.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723749468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.345 kcal (2) G-P(sol) polarization free energy of solvation -76.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds