Wall clock time and date at job start Mon Mar 30 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00181 * 2 1 4 4 H 1.48503 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46976 * 299.99405 * 3 2 1 6 6 H 1.48500 * 109.47350 * 59.99762 * 3 2 1 7 7 C 1.37878 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00198 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00037 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47294 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47061 * 64.99786 * 12 11 10 14 14 C 1.46896 * 111.00056 * 174.73627 * 13 12 11 15 15 H 1.09006 * 109.47174 * 327.15508 * 14 13 12 16 16 C 1.53000 * 109.47210 * 87.15514 * 14 13 12 17 17 C 1.53001 * 117.49851 * 252.80547 * 16 14 13 18 18 C 1.53008 * 117.49474 * 184.14533 * 16 14 13 19 19 C 1.53006 * 109.47240 * 207.15863 * 14 13 12 20 20 C 1.54892 * 110.48430 * 308.23900 * 19 14 13 21 21 C 1.55235 * 102.58908 * 156.67775 * 20 19 14 22 22 C 1.54261 * 104.23136 * 322.08409 * 21 20 19 23 23 C 1.53883 * 106.59752 * 23.60955 * 22 21 20 24 24 H 0.96998 * 119.99984 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47217 * 59.99705 * 9 7 2 26 26 H 1.09003 * 109.47152 * 299.99673 * 9 7 2 27 27 H 1.09002 * 109.46679 * 59.99691 * 11 10 9 28 28 H 1.08999 * 109.46976 * 300.00395 * 11 10 9 29 29 H 1.08999 * 109.46857 * 304.99987 * 12 11 10 30 30 H 1.08997 * 109.46932 * 185.00163 * 12 11 10 31 31 H 1.00901 * 111.00342 * 298.69061 * 13 12 11 32 32 H 1.08994 * 115.55121 * 38.48002 * 16 14 13 33 33 H 1.09001 * 117.49713 * 359.97438 * 17 16 14 34 34 H 1.08993 * 117.50048 * 145.02146 * 17 16 14 35 35 H 1.09000 * 117.49351 * 214.97567 * 18 16 14 36 36 H 1.08997 * 117.49936 * 359.97438 * 18 16 14 37 37 H 1.08998 * 110.43727 * 185.70278 * 19 14 13 38 38 H 1.09002 * 110.75553 * 275.07087 * 20 19 14 39 39 H 1.09001 * 110.75812 * 38.43562 * 20 19 14 40 40 H 1.09000 * 110.46579 * 203.39603 * 21 20 19 41 41 H 1.09003 * 110.58156 * 80.83225 * 21 20 19 42 42 H 1.09001 * 110.03702 * 264.32638 * 22 21 20 43 43 H 1.08997 * 110.07592 * 142.91227 * 22 21 20 44 44 H 1.09001 * 110.03283 * 240.71047 * 23 22 21 45 45 H 1.09001 * 110.06827 * 119.30673 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0000 12 6 2.6479 -5.9563 0.0006 13 7 3.4070 -5.8880 1.2564 14 6 4.3742 -6.9899 1.3475 15 1 3.9691 -7.8710 0.8497 16 6 5.6825 -6.5776 0.6698 17 6 6.0115 -7.2185 -0.6800 18 6 6.7897 -7.6291 0.5727 19 6 4.6418 -7.3134 2.8188 20 6 5.0211 -6.0284 3.5960 21 6 4.6577 -6.3982 5.0592 22 6 3.3625 -7.2262 4.9306 23 6 3.3524 -7.8081 3.5060 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 0.9451 -4.9822 -0.8903 28 1 0.9445 -4.9827 0.8897 29 1 3.3220 -5.7957 -0.8407 30 1 2.1819 -6.9375 -0.0894 31 1 3.8664 -4.9949 1.3532 32 1 5.9844 -5.5414 0.8218 33 1 5.2961 -7.9343 -1.0849 34 1 6.5302 -6.6041 -1.4158 35 1 7.8201 -7.2844 0.6604 36 1 6.5862 -8.6144 0.9920 37 1 5.4315 -8.0595 2.9070 38 1 6.0867 -5.8197 3.5009 39 1 4.4283 -5.1803 3.2531 40 1 4.4780 -5.4978 5.6466 41 1 5.4492 -6.9959 5.5113 42 1 2.4933 -6.5853 5.0782 43 1 3.3599 -8.0331 5.6634 44 1 2.4783 -7.4495 2.9624 45 1 3.3454 -8.8973 3.5469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723873906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:55 Heat of formation + Delta-G solvation = -47.503272 kcal Electronic energy + Delta-G solvation = -20952.490717 eV Core-core repulsion = 17969.560235 eV Total energy + Delta-G solvation = -2982.930482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.39268 -36.93801 -36.66435 -34.41294 -32.65193 -30.39389 -28.53857 -27.86783 -26.50717 -24.23828 -22.45574 -22.33791 -21.55074 -21.08327 -19.96139 -19.09408 -16.43378 -16.36528 -15.74385 -15.46002 -15.25577 -15.15945 -14.42816 -14.35904 -13.79426 -13.44540 -13.27390 -12.97645 -12.73189 -12.09234 -11.96110 -11.67327 -11.64495 -11.33250 -11.16916 -11.05968 -10.90618 -10.80904 -10.76391 -10.57349 -10.49316 -10.44912 -10.34627 -10.21904 -10.03695 -9.75529 -9.07025 -8.80037 -8.14059 -8.08780 -6.09557 -4.11014 3.29556 3.36038 3.42130 3.72617 4.34740 4.36431 4.52904 4.78181 4.84142 4.87501 4.97654 4.98851 5.02328 5.27047 5.27151 5.46706 5.51754 5.54492 5.59048 5.65716 5.74277 5.76611 5.78916 5.84207 5.89415 5.91128 6.02798 6.04609 6.07534 6.12342 6.21512 6.23101 6.29535 6.39954 6.42683 6.52745 6.66112 7.14424 7.33251 7.46822 7.72201 7.80876 8.17701 8.61171 9.02811 9.53890 11.02072 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.004250 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.024807 B = 6586.608758 C = 7021.232280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.398 6.398 11 C 0.064 3.936 12 C 0.066 3.934 13 N -0.672 5.672 14 C 0.124 3.876 15 H 0.071 0.929 16 C -0.176 4.176 17 C -0.180 4.180 18 C -0.176 4.176 19 C -0.074 4.074 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.115 4.115 24 H 0.263 0.737 25 H 0.003 0.997 26 H 0.005 0.995 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.356 0.644 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.870 -17.350 4.931 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.318 6.318 11 C -0.014 4.014 12 C -0.063 4.063 13 N -0.303 5.303 14 C 0.014 3.986 15 H 0.090 0.910 16 C -0.195 4.195 17 C -0.217 4.217 18 C -0.214 4.214 19 C -0.093 4.093 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.152 4.152 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.023 0.977 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.176 0.824 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.400 -17.509 5.295 20.566 hybrid contribution 0.710 1.173 -0.727 1.552 sum 10.110 -16.335 4.569 19.746 Atomic orbital electron populations 1.69973 1.06097 1.26989 1.50709 1.24942 0.94950 0.99393 0.95213 0.86311 0.80004 0.82731 0.77613 1.19533 1.20882 1.20835 1.21089 0.93997 0.89423 1.50571 0.91627 1.20161 0.88720 0.83541 0.95291 1.87791 1.35660 1.13093 1.95208 1.22288 0.94556 0.85340 0.99245 1.21959 0.95708 0.97649 0.90981 1.60597 1.28015 1.06552 1.35186 1.21131 0.88193 0.94546 0.94772 0.91047 1.23235 0.97789 0.98469 1.00044 1.22985 1.03700 1.03775 0.91244 1.22855 0.96631 0.99647 1.02271 1.21926 0.96964 0.97141 0.93304 1.22563 1.00325 0.98351 0.94221 1.22374 0.97126 0.99359 0.97254 1.22071 0.98145 0.98851 0.96788 1.22111 0.99027 0.98636 0.95465 0.92744 0.97949 0.97678 0.94470 0.93709 0.94647 0.91065 0.82371 0.87712 0.89087 0.89052 0.89177 0.88977 0.91423 0.92445 0.90031 0.92062 0.92490 0.91866 0.92861 0.90164 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.51 -15.12 9.43 -34.44 -0.32 -15.45 16 8 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 9 C 0.20 5.44 5.69 36.00 0.20 5.65 16 10 O -0.40 -9.47 9.94 -35.23 -0.35 -9.82 16 11 C 0.06 1.19 6.28 37.16 0.23 1.42 16 12 C 0.07 0.99 5.94 -3.83 -0.02 0.97 16 13 N -0.67 -9.50 4.77 -106.73 -0.51 -10.01 16 14 C 0.12 1.43 1.89 -67.71 -0.13 1.30 16 15 H 0.07 0.82 7.47 -51.93 -0.39 0.43 16 16 C -0.18 -1.96 4.75 -90.61 -0.43 -2.39 16 17 C -0.18 -1.88 10.18 -26.69 -0.27 -2.15 16 18 C -0.18 -1.67 9.74 -26.68 -0.26 -1.93 16 19 C -0.07 -0.81 2.63 -88.96 -0.23 -1.04 16 20 C -0.12 -1.35 5.88 -24.55 -0.14 -1.50 16 21 C -0.12 -1.33 6.84 -24.89 -0.17 -1.50 16 22 C -0.12 -1.31 6.80 -25.61 -0.17 -1.49 16 23 C -0.11 -1.27 6.28 -25.61 -0.16 -1.43 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.00 0.08 8.14 -51.92 -0.42 -0.35 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 31 H 0.36 5.71 6.96 -39.29 -0.27 5.43 16 32 H 0.10 1.31 7.96 -51.93 -0.41 0.89 16 33 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.80 7.89 -51.93 -0.41 0.39 16 37 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.11 6.39 -51.93 -0.33 0.77 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 1.02 7.30 -51.93 -0.38 0.64 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -29.77 356.07 -10.21 -39.98 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.45 Total: 1.92 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.98 Total: -18.01 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.23 Total: -36.34 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.35 Total: -9.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.77 -10.21 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723873906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.521 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds