Wall clock time and date at job start Mon Mar 30 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00181 * 2 1 4 4 H 1.48503 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46976 * 299.99405 * 3 2 1 6 6 H 1.48500 * 109.47350 * 59.99762 * 3 2 1 7 7 C 1.37878 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00198 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00037 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47294 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47061 * 64.99786 * 12 11 10 14 14 C 1.46896 * 111.00056 * 174.73627 * 13 12 11 15 15 H 1.09006 * 109.47174 * 327.15508 * 14 13 12 16 16 C 1.53000 * 109.47210 * 87.15514 * 14 13 12 17 17 C 1.53001 * 117.49851 * 252.80547 * 16 14 13 18 18 C 1.53008 * 117.49474 * 184.14533 * 16 14 13 19 19 C 1.53006 * 109.47240 * 207.15863 * 14 13 12 20 20 C 1.54892 * 110.48430 * 308.23900 * 19 14 13 21 21 C 1.55235 * 102.58908 * 156.67775 * 20 19 14 22 22 C 1.54261 * 104.23136 * 322.08409 * 21 20 19 23 23 C 1.53883 * 106.59752 * 23.60955 * 22 21 20 24 24 H 0.96998 * 119.99984 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47217 * 59.99705 * 9 7 2 26 26 H 1.09003 * 109.47152 * 299.99673 * 9 7 2 27 27 H 1.09002 * 109.46679 * 59.99691 * 11 10 9 28 28 H 1.08999 * 109.46976 * 300.00395 * 11 10 9 29 29 H 1.08999 * 109.46857 * 304.99987 * 12 11 10 30 30 H 1.08997 * 109.46932 * 185.00163 * 12 11 10 31 31 H 1.00901 * 111.00342 * 298.69061 * 13 12 11 32 32 H 1.08994 * 115.55121 * 38.48002 * 16 14 13 33 33 H 1.09001 * 117.49713 * 359.97438 * 17 16 14 34 34 H 1.08993 * 117.50048 * 145.02146 * 17 16 14 35 35 H 1.09000 * 117.49351 * 214.97567 * 18 16 14 36 36 H 1.08997 * 117.49936 * 359.97438 * 18 16 14 37 37 H 1.08998 * 110.43727 * 185.70278 * 19 14 13 38 38 H 1.09002 * 110.75553 * 275.07087 * 20 19 14 39 39 H 1.09001 * 110.75812 * 38.43562 * 20 19 14 40 40 H 1.09000 * 110.46579 * 203.39603 * 21 20 19 41 41 H 1.09003 * 110.58156 * 80.83225 * 21 20 19 42 42 H 1.09001 * 110.03702 * 264.32638 * 22 21 20 43 43 H 1.08997 * 110.07592 * 142.91227 * 22 21 20 44 44 H 1.09001 * 110.03283 * 240.71047 * 23 22 21 45 45 H 1.09001 * 110.06827 * 119.30673 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0000 12 6 2.6479 -5.9563 0.0006 13 7 3.4070 -5.8880 1.2564 14 6 4.3742 -6.9899 1.3475 15 1 3.9691 -7.8710 0.8497 16 6 5.6825 -6.5776 0.6698 17 6 6.0115 -7.2185 -0.6800 18 6 6.7897 -7.6291 0.5727 19 6 4.6418 -7.3134 2.8188 20 6 5.0211 -6.0284 3.5960 21 6 4.6577 -6.3982 5.0592 22 6 3.3625 -7.2262 4.9306 23 6 3.3524 -7.8081 3.5060 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 0.9451 -4.9822 -0.8903 28 1 0.9445 -4.9827 0.8897 29 1 3.3220 -5.7957 -0.8407 30 1 2.1819 -6.9375 -0.0894 31 1 3.8664 -4.9949 1.3532 32 1 5.9844 -5.5414 0.8218 33 1 5.2961 -7.9343 -1.0849 34 1 6.5302 -6.6041 -1.4158 35 1 7.8201 -7.2844 0.6604 36 1 6.5862 -8.6144 0.9920 37 1 5.4315 -8.0595 2.9070 38 1 6.0867 -5.8197 3.5009 39 1 4.4283 -5.1803 3.2531 40 1 4.4780 -5.4978 5.6466 41 1 5.4492 -6.9959 5.5113 42 1 2.4933 -6.5853 5.0782 43 1 3.3599 -8.0331 5.6634 44 1 2.4783 -7.4495 2.9624 45 1 3.3454 -8.8973 3.5469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723873906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:55 Heat of formation + Delta-G solvation = -63.850558 kcal Electronic energy + Delta-G solvation = -20953.199589 eV Core-core repulsion = 17969.560235 eV Total energy + Delta-G solvation = -2983.639353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33662 -38.63086 -37.60734 -35.70607 -34.77207 -31.58656 -29.58062 -29.42229 -28.15582 -25.24395 -24.51180 -23.23294 -22.81596 -22.10625 -20.83569 -20.02270 -18.63846 -17.53766 -17.23093 -16.78711 -16.48399 -16.30428 -16.14206 -15.68045 -15.09262 -14.78976 -14.39878 -14.18089 -13.98177 -13.60803 -13.20541 -13.13299 -12.85390 -12.70319 -12.62444 -12.38913 -12.37637 -12.09023 -11.92399 -11.86135 -11.76836 -11.40036 -11.33522 -11.26500 -11.25063 -11.09082 -10.87995 -10.66210 -10.21500 -9.20073 -8.32530 -6.44751 1.39179 1.40671 1.55129 2.34145 2.90126 3.01449 3.23621 3.28743 3.63702 3.90394 3.99145 4.00801 4.11151 4.17043 4.25828 4.35623 4.42045 4.54515 4.66836 4.67126 4.75194 4.77026 4.80098 4.84277 4.89360 4.93025 4.98368 5.01227 5.01794 5.06777 5.16358 5.18470 5.22145 5.26937 5.33764 5.38498 5.48443 5.54681 5.63186 5.73261 5.96003 6.24547 6.48047 6.54483 6.82693 7.27373 8.80175 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.004250 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.024807 B = 6586.608758 C = 7021.232280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.212 3.788 10 O -0.406 6.406 11 C 0.056 3.944 12 C 0.078 3.922 13 N -0.678 5.678 14 C 0.130 3.870 15 H 0.080 0.920 16 C -0.189 4.189 17 C -0.184 4.184 18 C -0.158 4.158 19 C -0.068 4.068 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.114 4.114 24 H 0.270 0.730 25 H -0.017 1.017 26 H -0.017 1.017 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.342 0.658 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.385 -18.300 5.173 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.137 3.863 10 O -0.326 6.326 11 C -0.021 4.021 12 C -0.051 4.051 13 N -0.309 5.309 14 C 0.020 3.980 15 H 0.098 0.902 16 C -0.209 4.209 17 C -0.221 4.221 18 C -0.195 4.195 19 C -0.087 4.087 20 C -0.156 4.156 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.915 -18.494 5.537 22.177 hybrid contribution 0.201 1.394 -0.794 1.617 sum 11.116 -17.100 4.743 20.940 Atomic orbital electron populations 1.70079 1.07789 1.28551 1.50634 1.25954 0.95929 1.03372 0.93945 0.85146 0.78661 0.77382 0.78270 1.18824 1.19643 1.19678 1.21402 0.94028 0.90818 1.52030 0.92052 1.19771 0.88583 0.84756 0.93203 1.87761 1.35364 1.14299 1.95171 1.22602 0.96171 0.84007 0.99305 1.21878 0.94694 0.97227 0.91281 1.60617 1.28971 1.06664 1.34601 1.21135 0.87784 0.93589 0.95500 0.90217 1.23087 0.98494 0.98147 1.01144 1.23041 1.04139 1.03801 0.91166 1.22929 0.96330 0.99455 1.00803 1.21915 0.97309 0.96952 0.92516 1.22515 1.00122 0.97908 0.95005 1.22382 0.97586 0.99377 0.96625 1.22077 0.97530 0.99088 0.97243 1.22088 0.98252 0.99576 0.95206 0.92072 0.99905 0.99935 0.93828 0.94161 0.95038 0.88195 0.83916 0.89563 0.88441 0.89452 0.88482 0.87510 0.89687 0.91959 0.92706 0.92719 0.90829 0.93455 0.91266 0.92117 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.98 44.86 29.54 68.60 2.03 46.88 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.55 -32.91 9.43 25.60 0.24 -32.67 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 12.17 5.69 71.24 0.41 12.58 16 10 O -0.41 -19.99 9.94 -148.98 -1.48 -21.47 16 11 C 0.06 2.15 6.28 71.98 0.45 2.60 16 12 C 0.08 2.30 5.94 86.30 0.51 2.81 16 13 N -0.68 -19.21 4.77 -491.57 -2.35 -21.56 16 14 C 0.13 2.83 1.89 44.92 0.08 2.91 16 15 H 0.08 1.63 7.47 -2.38 -0.02 1.61 16 16 C -0.19 -4.02 4.75 -10.79 -0.05 -4.07 16 17 C -0.18 -3.55 10.18 30.62 0.31 -3.24 16 18 C -0.16 -2.61 9.74 30.62 0.30 -2.31 16 19 C -0.07 -1.36 2.63 -9.72 -0.03 -1.39 16 20 C -0.12 -2.66 5.88 32.01 0.19 -2.47 16 21 C -0.12 -2.50 6.84 31.79 0.22 -2.28 16 22 C -0.12 -2.51 6.80 31.32 0.21 -2.30 16 23 C -0.11 -2.34 6.28 31.32 0.20 -2.14 16 24 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 25 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 26 H -0.02 -1.04 8.14 -2.39 -0.02 -1.05 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 2.38 7.92 -2.39 -0.02 2.36 16 31 H 0.34 11.36 6.96 -89.69 -0.62 10.74 16 32 H 0.09 2.17 7.96 -2.39 -0.02 2.15 16 33 H 0.10 1.74 8.07 -2.39 -0.02 1.72 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.48 7.89 -2.39 -0.02 1.46 16 37 H 0.08 1.45 7.48 -2.39 -0.02 1.43 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.54 6.39 -2.39 -0.02 1.52 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.50 7.30 -2.39 -0.02 1.48 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -64.48 356.07 2.30 -62.18 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.31 Total: 21.53 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 3.51 Total: -31.12 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -2.06 Total: -78.01 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.48 Total: -21.47 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.48 2.30 -62.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723873906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.667 kcal (2) G-P(sol) polarization free energy of solvation -64.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds