Wall clock time and date at job start Mon Mar 30 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.42901 * 113.99948 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47084 * 179.97438 * 12 11 10 14 14 H 1.08992 * 109.44925 * 304.94019 * 13 12 11 15 15 C 1.53033 * 109.44593 * 184.99977 * 13 12 11 16 16 C 1.53194 * 109.23348 * 180.46564 * 15 13 12 17 17 C 1.52773 * 109.15874 * 57.06070 * 16 15 13 18 18 C 1.53950 * 109.81150 * 182.08287 * 17 16 15 19 19 C 1.54964 * 104.12872 * 217.33466 * 18 17 16 20 20 C 1.54917 * 102.78720 * 37.67380 * 19 18 17 21 21 C 1.53588 * 109.96960 * 64.69942 * 17 16 15 22 22 C 1.52675 * 110.20168 * 303.23892 * 17 16 15 23 23 N 1.46847 * 109.44763 * 64.85582 * 13 12 11 24 24 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 26 26 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 27 27 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 28 28 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 29 29 H 1.08995 * 109.47392 * 299.99575 * 12 11 10 30 30 H 1.09003 * 109.47182 * 59.99587 * 12 11 10 31 31 H 1.09001 * 109.51210 * 300.39192 * 15 13 12 32 32 H 1.08998 * 109.51311 * 60.49181 * 15 13 12 33 33 H 1.08994 * 109.52625 * 176.96986 * 16 15 13 34 34 H 1.09003 * 109.51980 * 297.09981 * 16 15 13 35 35 H 1.09001 * 110.49901 * 335.99921 * 18 17 16 36 36 H 1.08997 * 110.50191 * 98.67457 * 18 17 16 37 37 H 1.08993 * 110.75106 * 279.34340 * 19 18 17 38 38 H 1.09005 * 110.74644 * 155.99256 * 19 18 17 39 39 H 1.09000 * 110.48352 * 203.54397 * 20 19 18 40 40 H 1.09000 * 110.60358 * 80.95675 * 20 19 18 41 41 H 1.08999 * 110.05323 * 238.31112 * 21 17 16 42 42 H 1.08998 * 110.05554 * 359.75154 * 21 17 16 43 43 H 1.09004 * 109.45786 * 178.26484 * 22 17 16 44 44 H 1.08997 * 109.46387 * 298.23497 * 22 17 16 45 45 H 1.00894 * 110.99633 * 306.15856 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.3707 -6.0557 0.0006 13 6 1.5035 -7.3162 0.0020 14 1 0.8138 -7.2812 0.8452 15 6 2.3991 -8.5507 0.1272 16 6 1.5269 -9.8101 0.1163 17 6 0.6928 -9.8313 -1.1634 18 6 -0.2282 -11.0649 -1.1655 19 6 -0.2402 -11.5255 -2.6451 20 6 1.2206 -11.2727 -3.0947 21 6 1.6125 -9.9582 -2.3869 22 6 -0.1442 -8.5588 -1.2684 23 7 0.7403 -7.3859 -1.2507 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6044 -0.8895 28 1 2.8719 -3.6043 0.8905 29 1 2.9993 -6.0478 -0.8898 30 1 3.0007 -6.0475 0.8901 31 1 3.0947 -8.5824 -0.7114 32 1 2.9577 -8.5020 1.0618 33 1 2.1634 -10.6943 0.1511 34 1 0.8659 -9.8028 0.9830 35 1 0.1800 -11.8471 -0.5255 36 1 -1.2328 -10.7918 -0.8427 37 1 -0.9344 -10.9236 -3.2313 38 1 -0.4888 -12.5843 -2.7179 39 1 1.2712 -11.1530 -4.1770 40 1 1.8680 -12.0878 -2.7714 41 1 1.4608 -9.1128 -3.0579 42 1 2.6542 -10.0003 -2.0688 43 1 -0.7105 -8.5725 -2.1997 44 1 -0.8331 -8.5066 -0.4253 45 1 0.2177 -6.5364 -1.4033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724793706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:33 Heat of formation + Delta-G solvation = -82.976322 kcal Electronic energy + Delta-G solvation = -20744.382635 eV Core-core repulsion = 17759.913926 eV Total energy + Delta-G solvation = -2984.468708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17098 -37.58044 -35.83562 -33.19995 -31.95088 -31.20600 -29.68353 -28.84710 -26.41460 -24.45486 -23.98653 -22.78060 -21.14897 -20.80751 -20.39017 -18.24801 -16.59702 -16.39877 -15.90076 -15.47132 -15.30576 -14.87500 -14.53009 -14.23508 -14.12128 -13.59459 -13.30243 -13.13339 -12.81471 -12.66494 -12.24157 -12.13731 -11.53884 -11.28309 -11.25062 -11.17174 -10.99847 -10.93411 -10.78187 -10.65431 -10.58477 -10.47133 -10.27187 -10.19165 -10.14944 -9.45370 -9.19176 -8.87386 -8.35328 -8.29068 -6.02784 -4.06223 3.31294 3.37050 3.40335 4.14595 4.21446 4.44640 4.48495 4.50023 4.58235 4.93584 5.05941 5.09527 5.24249 5.25771 5.33346 5.37379 5.41003 5.48233 5.53653 5.61717 5.64679 5.70130 5.71113 5.77565 5.82155 5.82822 5.92539 5.98535 5.99602 6.05477 6.11226 6.27433 6.29718 6.32931 6.36990 6.41951 6.90316 7.16353 7.55394 7.56557 7.80029 7.83996 8.12432 8.37113 9.00399 9.57466 11.08933 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044076 B = 0.002966 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.107390 B = 9439.294305 C = 9619.529401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.072 3.928 11 O -0.395 6.395 12 C 0.066 3.934 13 C 0.094 3.906 14 H 0.042 0.958 15 C -0.113 4.113 16 C -0.106 4.106 17 C -0.058 4.058 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.105 4.105 22 C 0.071 3.929 23 N -0.681 5.681 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.035 0.965 28 H 0.033 0.967 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.026 0.974 45 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 -23.937 -2.663 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.004 4.004 11 O -0.315 6.315 12 C -0.012 4.012 13 C -0.016 4.016 14 H 0.060 0.940 15 C -0.151 4.151 16 C -0.143 4.143 17 C -0.059 4.059 18 C -0.154 4.154 19 C -0.162 4.162 20 C -0.165 4.165 21 C -0.142 4.142 22 C -0.058 4.058 23 N -0.314 5.314 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.991 -24.111 -2.996 24.377 hybrid contribution 0.043 1.285 0.684 1.456 sum 2.034 -22.826 -2.312 23.033 Atomic orbital electron populations 1.69983 1.06074 1.26742 1.50246 1.24997 0.94881 0.99298 0.95139 0.86527 0.79754 0.83157 0.78165 1.20549 1.21127 1.19839 1.21062 0.93012 0.90603 1.51487 0.92573 1.19060 0.94242 0.89504 0.98319 1.22842 0.96292 0.83102 0.98150 1.87846 1.34328 1.14008 1.95310 1.22437 0.93119 0.85801 0.99834 1.21404 0.95349 0.93476 0.91363 0.93966 1.21613 0.97965 0.93428 1.02046 1.21616 0.98092 0.97630 0.97000 1.20977 0.95228 0.94157 0.95514 1.22424 0.99325 0.96895 0.96799 1.22492 0.97067 1.00465 0.96126 1.22419 0.96195 0.97966 0.99901 1.22128 0.98637 0.97305 0.96141 1.21924 0.93334 0.90187 1.00359 1.60270 1.30146 1.06122 1.34907 0.92867 0.95766 0.95895 0.94662 0.94880 0.93118 0.93793 0.90833 0.91684 0.91827 0.92346 0.91581 0.91771 0.91558 0.92035 0.92034 0.92187 0.90562 0.92037 0.90906 0.95546 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 10 C 0.07 1.60 5.88 37.16 0.22 1.82 16 11 O -0.40 -8.00 9.82 -35.23 -0.35 -8.35 16 12 C 0.07 1.03 5.55 37.16 0.21 1.24 16 13 C 0.09 1.27 2.73 -67.72 -0.18 1.09 16 14 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 15 C -0.11 -1.22 5.14 -26.61 -0.14 -1.36 16 16 C -0.11 -1.02 4.45 -26.75 -0.12 -1.14 16 17 C -0.06 -0.56 0.62 -153.99 -0.10 -0.66 16 18 C -0.12 -0.97 5.89 -25.20 -0.15 -1.12 16 19 C -0.12 -0.97 6.91 -24.68 -0.17 -1.14 16 20 C -0.13 -1.05 6.84 -25.01 -0.17 -1.22 16 21 C -0.10 -1.02 5.38 -25.72 -0.14 -1.15 16 22 C 0.07 0.81 4.90 -3.98 -0.02 0.79 16 23 N -0.68 -9.11 6.04 -106.92 -0.65 -9.76 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.81 6.82 -51.93 -0.35 0.46 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 36 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 42 H 0.06 0.60 6.62 -51.93 -0.34 0.26 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.36 5.33 8.31 -39.29 -0.33 5.01 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -29.95 345.42 -9.92 -39.88 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.53 Total: -1.19 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.32 Total: -16.10 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.09 Total: -36.17 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.35 Total: -8.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.95 -9.92 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724793706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.100 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds