Wall clock time and date at job start Mon Mar 30 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.42901 * 113.99948 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47084 * 179.97438 * 12 11 10 14 14 H 1.08992 * 109.44925 * 304.94019 * 13 12 11 15 15 C 1.53033 * 109.44593 * 184.99977 * 13 12 11 16 16 C 1.53194 * 109.23348 * 180.46564 * 15 13 12 17 17 C 1.52773 * 109.15874 * 57.06070 * 16 15 13 18 18 C 1.53950 * 109.81150 * 182.08287 * 17 16 15 19 19 C 1.54964 * 104.12872 * 217.33466 * 18 17 16 20 20 C 1.54917 * 102.78720 * 37.67380 * 19 18 17 21 21 C 1.53588 * 109.96960 * 64.69942 * 17 16 15 22 22 C 1.52675 * 110.20168 * 303.23892 * 17 16 15 23 23 N 1.46847 * 109.44763 * 64.85582 * 13 12 11 24 24 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 26 26 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 27 27 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 28 28 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 29 29 H 1.08995 * 109.47392 * 299.99575 * 12 11 10 30 30 H 1.09003 * 109.47182 * 59.99587 * 12 11 10 31 31 H 1.09001 * 109.51210 * 300.39192 * 15 13 12 32 32 H 1.08998 * 109.51311 * 60.49181 * 15 13 12 33 33 H 1.08994 * 109.52625 * 176.96986 * 16 15 13 34 34 H 1.09003 * 109.51980 * 297.09981 * 16 15 13 35 35 H 1.09001 * 110.49901 * 335.99921 * 18 17 16 36 36 H 1.08997 * 110.50191 * 98.67457 * 18 17 16 37 37 H 1.08993 * 110.75106 * 279.34340 * 19 18 17 38 38 H 1.09005 * 110.74644 * 155.99256 * 19 18 17 39 39 H 1.09000 * 110.48352 * 203.54397 * 20 19 18 40 40 H 1.09000 * 110.60358 * 80.95675 * 20 19 18 41 41 H 1.08999 * 110.05323 * 238.31112 * 21 17 16 42 42 H 1.08998 * 110.05554 * 359.75154 * 21 17 16 43 43 H 1.09004 * 109.45786 * 178.26484 * 22 17 16 44 44 H 1.08997 * 109.46387 * 298.23497 * 22 17 16 45 45 H 1.00894 * 110.99633 * 306.15856 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.3707 -6.0557 0.0006 13 6 1.5035 -7.3162 0.0020 14 1 0.8138 -7.2812 0.8452 15 6 2.3991 -8.5507 0.1272 16 6 1.5269 -9.8101 0.1163 17 6 0.6928 -9.8313 -1.1634 18 6 -0.2282 -11.0649 -1.1655 19 6 -0.2402 -11.5255 -2.6451 20 6 1.2206 -11.2727 -3.0947 21 6 1.6125 -9.9582 -2.3869 22 6 -0.1442 -8.5588 -1.2684 23 7 0.7403 -7.3859 -1.2507 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6044 -0.8895 28 1 2.8719 -3.6043 0.8905 29 1 2.9993 -6.0478 -0.8898 30 1 3.0007 -6.0475 0.8901 31 1 3.0947 -8.5824 -0.7114 32 1 2.9577 -8.5020 1.0618 33 1 2.1634 -10.6943 0.1511 34 1 0.8659 -9.8028 0.9830 35 1 0.1800 -11.8471 -0.5255 36 1 -1.2328 -10.7918 -0.8427 37 1 -0.9344 -10.9236 -3.2313 38 1 -0.4888 -12.5843 -2.7179 39 1 1.2712 -11.1530 -4.1770 40 1 1.8680 -12.0878 -2.7714 41 1 1.4608 -9.1128 -3.0579 42 1 2.6542 -10.0003 -2.0688 43 1 -0.7105 -8.5725 -2.1997 44 1 -0.8331 -8.5066 -0.4253 45 1 0.2177 -6.5364 -1.4033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724793706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:32 Heat of formation + Delta-G solvation = -100.773155 kcal Electronic energy + Delta-G solvation = -20745.154363 eV Core-core repulsion = 17759.913926 eV Total energy + Delta-G solvation = -2985.240437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03306 -39.00113 -36.92474 -35.31745 -32.86205 -32.53186 -31.35879 -29.58081 -27.62224 -26.36042 -24.89727 -23.75939 -22.90719 -21.91516 -21.21707 -19.12179 -18.69689 -17.38162 -17.07627 -16.98784 -16.57921 -16.37811 -15.95372 -15.33278 -15.22259 -14.48389 -14.34766 -14.33680 -14.07013 -13.85314 -13.65522 -13.56953 -13.05499 -12.84916 -12.45753 -12.35157 -12.11875 -12.03586 -11.96966 -11.88918 -11.70609 -11.49110 -11.37812 -11.37022 -11.31679 -11.07448 -10.98817 -10.66526 -10.41573 -9.36287 -8.24669 -6.37857 1.40402 1.42875 1.54008 2.36855 2.86156 3.09213 3.16239 3.68757 3.74186 3.77821 4.02866 4.15629 4.25268 4.33904 4.38378 4.41762 4.43504 4.48231 4.55198 4.57088 4.68784 4.71679 4.81961 4.84768 4.85379 4.92378 4.94100 5.01576 5.05609 5.12958 5.17060 5.21641 5.31890 5.35188 5.37173 5.49778 5.57068 5.58952 5.63943 5.71857 6.10336 6.14157 6.39599 6.42724 6.78072 7.32022 8.88445 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044076 B = 0.002966 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.107390 B = 9439.294305 C = 9619.529401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.030 3.970 10 C 0.088 3.912 11 O -0.413 6.413 12 C 0.062 3.938 13 C 0.097 3.903 14 H 0.029 0.971 15 C -0.107 4.107 16 C -0.103 4.103 17 C -0.057 4.057 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.103 4.103 22 C 0.071 3.929 23 N -0.687 5.687 24 H 0.266 0.734 25 H -0.006 1.006 26 H -0.008 1.008 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.020 0.980 45 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -25.013 -2.557 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.008 4.008 10 C 0.012 3.988 11 O -0.333 6.333 12 C -0.015 4.015 13 C -0.013 4.013 14 H 0.046 0.954 15 C -0.145 4.145 16 C -0.141 4.141 17 C -0.058 4.058 18 C -0.151 4.151 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.140 4.140 22 C -0.058 4.058 23 N -0.318 5.318 24 H 0.075 0.925 25 H 0.012 0.988 26 H 0.011 0.989 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.039 0.961 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.581 -25.224 -2.891 25.640 hybrid contribution -0.500 1.564 0.639 1.762 sum 3.081 -23.660 -2.253 23.966 Atomic orbital electron populations 1.70127 1.08040 1.28090 1.50946 1.26053 0.95829 1.03687 0.94279 0.85306 0.78576 0.77636 0.78664 1.19533 1.20602 1.18392 1.21479 0.93726 0.91497 1.51702 0.91478 1.18918 0.94587 0.91890 0.95372 1.22428 0.94696 0.82651 0.98982 1.87813 1.35537 1.14508 1.95470 1.22703 0.93348 0.84787 1.00661 1.21433 0.95305 0.93692 0.90859 0.95351 1.21599 0.97641 0.92505 1.02739 1.21624 0.98097 0.97573 0.96801 1.20985 0.95327 0.93758 0.95701 1.22409 0.98954 0.96352 0.97407 1.22493 0.96690 1.01218 0.95592 1.22405 0.96588 0.97315 0.99855 1.22077 0.98634 0.97473 0.95861 1.22005 0.93363 0.90292 1.00156 1.60348 1.30490 1.06154 1.34835 0.92537 0.98765 0.98923 0.93828 0.93812 0.92735 0.92313 0.90781 0.90383 0.90026 0.92383 0.90472 0.91856 0.92066 0.90677 0.91922 0.91168 0.92537 0.92014 0.90795 0.96134 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.03 1.66 5.34 29.85 0.16 1.82 16 10 C 0.09 3.96 5.88 71.98 0.42 4.39 16 11 O -0.41 -16.98 9.82 -148.98 -1.46 -18.44 16 12 C 0.06 1.91 5.55 71.98 0.40 2.31 16 13 C 0.10 2.59 2.73 44.94 0.12 2.71 16 14 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 15 C -0.11 -2.15 5.14 30.67 0.16 -1.99 16 16 C -0.10 -1.79 4.45 30.58 0.14 -1.65 16 17 C -0.06 -1.03 0.62 -51.85 -0.03 -1.06 16 18 C -0.11 -1.66 5.89 31.59 0.19 -1.48 16 19 C -0.12 -1.68 6.91 31.92 0.22 -1.46 16 20 C -0.12 -1.80 6.84 31.71 0.22 -1.59 16 21 C -0.10 -1.86 5.38 31.25 0.17 -1.70 16 22 C 0.07 1.59 4.90 86.19 0.42 2.02 16 23 N -0.69 -18.61 6.04 -492.18 -2.97 -21.58 16 24 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 25 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.50 6.82 -2.39 -0.02 1.49 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.99 7.84 -2.39 -0.02 0.97 16 36 H 0.06 0.95 7.82 -2.39 -0.02 0.93 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.25 7.48 -2.39 -0.02 1.23 16 42 H 0.06 1.11 6.62 -2.39 -0.02 1.09 16 43 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.34 10.71 8.31 -89.70 -0.75 9.96 16 Total: -1.00 -64.89 345.42 1.33 -63.55 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.18 Total: 16.47 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 3.28 Total: -28.77 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.69 Total: -79.21 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.46 Total: -18.44 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.89 1.33 -63.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724793706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.222 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds