Wall clock time and date at job start Mon Mar 30 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00385 * 2 1 4 4 H 1.48501 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47270 * 300.00807 * 3 2 1 6 6 H 1.48510 * 109.46965 * 60.00321 * 3 2 1 7 7 C 1.37883 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99476 * 165.70639 * 7 2 1 9 9 C 1.50700 * 120.00158 * 345.71285 * 7 2 1 10 10 C 1.53003 * 115.54704 * 324.67930 * 9 7 2 11 11 N 1.46895 * 109.46826 * 148.22067 * 10 9 7 12 12 C 1.46848 * 111.00128 * 285.89382 * 11 10 9 13 13 C 1.53034 * 109.52237 * 174.15930 * 12 11 10 14 14 C 1.53121 * 109.27827 * 59.18313 * 13 12 11 15 15 F 1.39904 * 109.52084 * 62.24650 * 14 13 12 16 16 C 1.52999 * 109.57738 * 182.40387 * 14 13 12 17 17 C 1.53004 * 117.49624 * 13.46257 * 16 14 13 18 18 C 1.53001 * 117.49952 * 304.80578 * 16 14 13 19 19 C 1.53120 * 109.15928 * 302.34399 * 14 13 12 20 20 C 1.46846 * 110.99882 * 161.68817 * 11 10 9 21 21 C 1.52997 * 117.51720 * 110.37776 * 9 7 2 22 22 C 1.52997 * 117.49905 * 179.00812 * 9 7 2 23 23 H 0.97003 * 119.99419 * 5.00251 * 1 2 3 24 24 H 1.09002 * 109.47303 * 28.21742 * 10 9 7 25 25 H 1.09000 * 109.47100 * 268.21969 * 10 9 7 26 26 H 1.08994 * 109.46452 * 294.17819 * 12 11 10 27 27 H 1.08998 * 109.45897 * 54.15168 * 12 11 10 28 28 H 1.08998 * 109.51342 * 299.24208 * 13 12 11 29 29 H 1.09004 * 109.50479 * 179.12270 * 13 12 11 30 30 H 1.09001 * 115.55087 * 159.13124 * 16 14 13 31 31 H 1.09001 * 117.49893 * 359.97438 * 17 16 14 32 32 H 1.09003 * 117.49406 * 145.01639 * 17 16 14 33 33 H 1.09000 * 117.49634 * 214.97660 * 18 16 14 34 34 H 1.08995 * 117.49710 * 359.97313 * 18 16 14 35 35 H 1.09000 * 109.50426 * 297.70838 * 19 14 13 36 36 H 1.09005 * 109.49760 * 177.59267 * 19 14 13 37 37 H 1.09009 * 109.46373 * 305.85031 * 20 11 10 38 38 H 1.08992 * 109.46671 * 65.83057 * 20 11 10 39 39 H 1.08996 * 117.49589 * 214.96725 * 21 9 7 40 40 H 1.08994 * 117.49995 * 359.97438 * 21 9 7 41 41 H 1.09004 * 117.49577 * 359.97438 * 22 9 7 42 42 H 1.08999 * 117.49788 * 144.97220 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0595 -1.2085 -0.2315 9 6 1.2859 -2.4792 0.3210 10 6 0.1815 -2.3719 1.3744 11 7 -0.8746 -3.3488 1.0778 12 6 -1.6816 -2.9188 -0.0713 13 6 -2.6738 -4.0236 -0.4413 14 6 -3.5773 -4.3148 0.7601 15 9 -4.3152 -3.1696 1.0786 16 6 -4.5327 -5.4597 0.4175 17 6 -4.2291 -6.2817 -0.8367 18 6 -5.4055 -5.3023 -0.8292 19 6 -2.7092 -4.7134 1.9568 20 6 -1.7158 -3.5887 2.2573 21 6 1.0799 -3.4782 -0.8194 22 6 2.1010 -3.7734 0.2812 23 1 -0.4849 0.8369 -0.0733 24 1 -0.2388 -1.3663 1.3590 25 1 0.5989 -2.5761 2.3604 26 1 -2.2277 -2.0118 0.1875 27 1 -1.0274 -2.7191 -0.9200 28 1 -2.1281 -4.9269 -0.7136 29 1 -3.2832 -3.6979 -1.2844 30 1 -4.9635 -5.9837 1.2707 31 1 -3.3491 -6.0066 -1.4180 32 1 -4.4606 -7.3465 -0.8088 33 1 -6.4105 -5.7232 -0.7964 34 1 -5.2995 -4.3830 -1.4051 35 1 -2.1639 -5.6276 1.7223 36 1 -3.3439 -4.8806 2.8271 37 1 -1.0866 -3.8755 3.0999 38 1 -2.2620 -2.6786 2.5051 39 1 0.1576 -4.0591 -0.8190 40 1 1.4637 -3.2060 -1.8025 41 1 3.1569 -3.6954 0.0220 42 1 1.8507 -4.5482 1.0057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724834320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:20 Heat of formation + Delta-G solvation = 11.738379 kcal Electronic energy + Delta-G solvation = -21862.616478 eV Core-core repulsion = 18758.794602 eV Total energy + Delta-G solvation = -3103.821876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.33706 -38.71341 -37.34692 -35.35649 -32.17565 -31.33112 -30.49718 -26.33451 -25.38751 -23.44924 -22.75880 -22.42940 -20.83487 -20.39750 -19.04432 -18.55738 -16.34746 -16.11870 -15.57187 -15.17801 -14.66851 -14.60108 -14.33728 -14.07666 -13.76078 -13.15597 -12.93961 -12.50360 -12.11917 -11.94690 -11.68571 -11.53003 -11.36954 -11.11166 -11.06124 -10.89864 -10.72346 -10.60209 -10.44662 -10.39212 -10.16703 -9.98895 -9.78360 -9.71005 -9.07384 -9.00617 -8.57247 -7.92809 -7.27038 -5.99681 -4.05181 3.25367 3.35278 3.39684 3.68533 4.36716 4.41084 4.67817 4.72838 4.87066 4.90763 5.01535 5.04558 5.30132 5.41089 5.56084 5.61253 5.69094 5.75796 5.82333 5.94020 5.98260 6.02240 6.09353 6.17143 6.21641 6.30911 6.41967 6.56644 6.57628 6.70529 6.80093 6.91314 6.92045 7.14997 7.22483 7.44785 7.58720 7.59284 7.93799 8.09011 8.20320 8.59071 8.91057 9.51313 10.95349 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.005602 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.842004 B = 4996.734690 C = 5272.141072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.068 3.932 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.486 4.486 8 H 0.060 0.940 9 C 0.055 3.945 10 C 0.074 3.926 11 N -0.534 5.534 12 C 0.063 3.937 13 C -0.138 4.138 14 C 0.151 3.849 15 F -0.208 7.208 16 C -0.179 4.179 17 C -0.172 4.172 18 C -0.172 4.172 19 C -0.126 4.126 20 C 0.054 3.946 21 C -0.199 4.199 22 C -0.206 4.206 23 H 0.260 0.740 24 H 0.103 0.897 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.031 0.969 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 -9.836 0.992 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.523 4.523 8 H 0.078 0.922 9 C 0.054 3.946 10 C -0.052 4.052 11 N -0.258 5.258 12 C -0.064 4.064 13 C -0.176 4.176 14 C 0.133 3.867 15 F -0.188 7.188 16 C -0.197 4.197 17 C -0.209 4.209 18 C -0.209 4.209 19 C -0.164 4.164 20 C -0.075 4.075 21 C -0.237 4.237 22 C -0.243 4.243 23 H 0.071 0.929 24 H 0.120 0.880 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.809 -10.089 0.953 13.428 hybrid contribution -0.034 1.567 0.237 1.585 sum -8.844 -8.522 1.191 12.339 Atomic orbital electron populations 1.69804 1.05855 1.26484 1.49146 1.24970 0.94816 0.98997 0.94584 0.86567 0.80373 0.83650 0.77614 1.19737 1.21128 1.20883 1.20686 0.95292 0.89874 1.46466 0.92198 1.18940 0.93998 0.87775 0.93855 1.21951 0.90820 0.96924 0.95524 1.62028 1.12207 1.47735 1.03861 1.22041 0.94458 0.94016 0.95927 1.22369 0.97531 1.01595 0.96134 1.20379 0.88925 0.80733 0.96652 1.92827 1.79060 1.52725 1.94233 1.22821 1.02790 1.00851 0.93282 1.23148 1.00571 0.97071 1.00067 1.22922 0.95570 1.01712 1.00686 1.22085 0.97356 1.00418 0.96556 1.21964 0.94600 0.96552 0.94390 1.23063 0.99276 1.07590 0.93736 1.22779 0.95403 1.02710 1.03454 0.92935 0.87994 0.94488 0.94409 0.88209 0.89740 0.91379 0.87424 0.87506 0.88752 0.88843 0.88414 0.89721 0.91451 0.91302 0.95106 0.89579 0.91860 0.91711 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.48 10.75 55.43 0.60 -22.89 16 2 C 0.07 1.81 5.13 -17.82 -0.09 1.72 16 3 Si 0.89 20.68 29.56 -169.99 -5.03 15.65 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.49 -13.11 9.03 -34.44 -0.31 -13.42 16 8 H 0.06 1.64 7.86 -52.48 -0.41 1.22 16 9 C 0.06 1.36 2.14 -155.66 -0.33 1.02 16 10 C 0.07 1.74 4.85 -3.83 -0.02 1.72 16 11 N -0.53 -10.68 3.66 -234.68 -0.86 -11.54 16 12 C 0.06 1.27 4.15 -3.83 -0.02 1.25 16 13 C -0.14 -2.20 3.86 -26.65 -0.10 -2.30 16 14 C 0.15 2.26 1.06 -90.50 -0.10 2.16 16 15 F -0.21 -3.67 15.97 2.25 0.04 -3.63 16 16 C -0.18 -2.17 5.43 -90.62 -0.49 -2.66 16 17 C -0.17 -1.81 9.66 -26.69 -0.26 -2.07 16 18 C -0.17 -1.89 9.90 -26.69 -0.26 -2.16 16 19 C -0.13 -1.84 5.16 -26.65 -0.14 -1.97 16 20 C 0.05 0.94 5.32 -3.83 -0.02 0.92 16 21 C -0.20 -4.53 8.04 -26.73 -0.21 -4.74 16 22 C -0.21 -4.61 9.94 -26.73 -0.27 -4.88 16 23 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 24 H 0.10 2.67 4.92 -51.93 -0.26 2.42 16 25 H 0.04 0.85 7.82 -51.93 -0.41 0.44 16 26 H 0.04 0.85 7.87 -51.93 -0.41 0.45 16 27 H 0.10 2.24 5.53 -51.93 -0.29 1.95 16 28 H 0.08 1.27 6.59 -51.93 -0.34 0.93 16 29 H 0.07 1.03 7.11 -51.93 -0.37 0.66 16 30 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.11 1.17 5.84 -51.93 -0.30 0.87 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 1.15 7.34 -51.93 -0.38 0.77 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.14 7.94 -51.92 -0.41 0.73 16 38 H 0.03 0.59 7.87 -51.93 -0.41 0.18 16 39 H 0.09 1.85 5.49 -51.93 -0.28 1.57 16 40 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -26.94 320.57 -9.83 -36.77 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.79 Total: 6.22 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -2.62 Total: -25.41 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.26 Total: -34.43 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.04 Total: -3.63 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.94 -9.83 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724834320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.507 kcal (2) G-P(sol) polarization free energy of solvation -26.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds