Wall clock time and date at job start Mon Mar 30 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00385 * 2 1 4 4 H 1.48501 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47270 * 300.00807 * 3 2 1 6 6 H 1.48510 * 109.46965 * 60.00321 * 3 2 1 7 7 C 1.37883 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99476 * 165.70639 * 7 2 1 9 9 C 1.50700 * 120.00158 * 345.71285 * 7 2 1 10 10 C 1.53003 * 115.54704 * 324.67930 * 9 7 2 11 11 N 1.46895 * 109.46826 * 148.22067 * 10 9 7 12 12 C 1.46848 * 111.00128 * 285.89382 * 11 10 9 13 13 C 1.53034 * 109.52237 * 174.15930 * 12 11 10 14 14 C 1.53121 * 109.27827 * 59.18313 * 13 12 11 15 15 F 1.39904 * 109.52084 * 62.24650 * 14 13 12 16 16 C 1.52999 * 109.57738 * 182.40387 * 14 13 12 17 17 C 1.53004 * 117.49624 * 13.46257 * 16 14 13 18 18 C 1.53001 * 117.49952 * 304.80578 * 16 14 13 19 19 C 1.53120 * 109.15928 * 302.34399 * 14 13 12 20 20 C 1.46846 * 110.99882 * 161.68817 * 11 10 9 21 21 C 1.52997 * 117.51720 * 110.37776 * 9 7 2 22 22 C 1.52997 * 117.49905 * 179.00812 * 9 7 2 23 23 H 0.97003 * 119.99419 * 5.00251 * 1 2 3 24 24 H 1.09002 * 109.47303 * 28.21742 * 10 9 7 25 25 H 1.09000 * 109.47100 * 268.21969 * 10 9 7 26 26 H 1.08994 * 109.46452 * 294.17819 * 12 11 10 27 27 H 1.08998 * 109.45897 * 54.15168 * 12 11 10 28 28 H 1.08998 * 109.51342 * 299.24208 * 13 12 11 29 29 H 1.09004 * 109.50479 * 179.12270 * 13 12 11 30 30 H 1.09001 * 115.55087 * 159.13124 * 16 14 13 31 31 H 1.09001 * 117.49893 * 359.97438 * 17 16 14 32 32 H 1.09003 * 117.49406 * 145.01639 * 17 16 14 33 33 H 1.09000 * 117.49634 * 214.97660 * 18 16 14 34 34 H 1.08995 * 117.49710 * 359.97313 * 18 16 14 35 35 H 1.09000 * 109.50426 * 297.70838 * 19 14 13 36 36 H 1.09005 * 109.49760 * 177.59267 * 19 14 13 37 37 H 1.09009 * 109.46373 * 305.85031 * 20 11 10 38 38 H 1.08992 * 109.46671 * 65.83057 * 20 11 10 39 39 H 1.08996 * 117.49589 * 214.96725 * 21 9 7 40 40 H 1.08994 * 117.49995 * 359.97438 * 21 9 7 41 41 H 1.09004 * 117.49577 * 359.97438 * 22 9 7 42 42 H 1.08999 * 117.49788 * 144.97220 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0595 -1.2085 -0.2315 9 6 1.2859 -2.4792 0.3210 10 6 0.1815 -2.3719 1.3744 11 7 -0.8746 -3.3488 1.0778 12 6 -1.6816 -2.9188 -0.0713 13 6 -2.6738 -4.0236 -0.4413 14 6 -3.5773 -4.3148 0.7601 15 9 -4.3152 -3.1696 1.0786 16 6 -4.5327 -5.4597 0.4175 17 6 -4.2291 -6.2817 -0.8367 18 6 -5.4055 -5.3023 -0.8292 19 6 -2.7092 -4.7134 1.9568 20 6 -1.7158 -3.5887 2.2573 21 6 1.0799 -3.4782 -0.8194 22 6 2.1010 -3.7734 0.2812 23 1 -0.4849 0.8369 -0.0733 24 1 -0.2388 -1.3663 1.3590 25 1 0.5989 -2.5761 2.3604 26 1 -2.2277 -2.0118 0.1875 27 1 -1.0274 -2.7191 -0.9200 28 1 -2.1281 -4.9269 -0.7136 29 1 -3.2832 -3.6979 -1.2844 30 1 -4.9635 -5.9837 1.2707 31 1 -3.3491 -6.0066 -1.4180 32 1 -4.4606 -7.3465 -0.8088 33 1 -6.4105 -5.7232 -0.7964 34 1 -5.2995 -4.3830 -1.4051 35 1 -2.1639 -5.6276 1.7223 36 1 -3.3439 -4.8806 2.8271 37 1 -1.0866 -3.8755 3.0999 38 1 -2.2620 -2.6786 2.5051 39 1 0.1576 -4.0591 -0.8190 40 1 1.4637 -3.2060 -1.8025 41 1 3.1569 -3.6954 0.0220 42 1 1.8507 -4.5482 1.0057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724834320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:19 Heat of formation + Delta-G solvation = -0.882340 kcal Electronic energy + Delta-G solvation = -21863.163754 eV Core-core repulsion = 18758.794602 eV Total energy + Delta-G solvation = -3104.369151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.62492 -40.16872 -38.63264 -36.89808 -34.20613 -32.71811 -31.90056 -28.08091 -27.18842 -24.86210 -24.20507 -23.28170 -22.62433 -21.65505 -20.69116 -20.08174 -18.11109 -17.45633 -16.91864 -16.57102 -16.37136 -16.06391 -15.84897 -15.45915 -15.29420 -14.64823 -14.35176 -14.06395 -13.59958 -13.47238 -13.10103 -13.06532 -12.87111 -12.80866 -12.56895 -12.44859 -12.31295 -12.02133 -11.88357 -11.76877 -11.63546 -11.30564 -11.23487 -11.05862 -10.87048 -10.79446 -10.42893 -9.83617 -9.01964 -8.00594 -6.14179 1.38145 1.43170 1.53264 2.41239 2.81498 2.97779 3.23074 3.39405 3.57572 3.70600 3.77702 3.93396 4.05921 4.18968 4.25908 4.34279 4.44892 4.53275 4.60012 4.66826 4.72900 4.77290 4.82074 4.84850 4.88372 4.99590 5.02504 5.09761 5.13523 5.20412 5.23076 5.28644 5.30837 5.38922 5.46730 5.57263 5.58776 5.76283 6.03683 6.27264 6.48313 6.61404 6.87798 7.43999 8.90400 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.005602 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.842004 B = 4996.734690 C = 5272.141072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.029 3.971 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.511 4.511 8 H 0.048 0.952 9 C 0.025 3.975 10 C 0.083 3.917 11 N -0.525 5.525 12 C 0.074 3.926 13 C -0.129 4.129 14 C 0.145 3.855 15 F -0.228 7.228 16 C -0.186 4.186 17 C -0.159 4.159 18 C -0.175 4.175 19 C -0.118 4.118 20 C 0.050 3.950 21 C -0.188 4.188 22 C -0.188 4.188 23 H 0.259 0.741 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.001 0.999 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.008 0.992 39 H 0.099 0.901 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.574 -11.900 1.222 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.171 4.171 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.045 4.045 11 N -0.249 5.249 12 C -0.054 4.054 13 C -0.167 4.167 14 C 0.127 3.873 15 F -0.209 7.209 16 C -0.205 4.205 17 C -0.196 4.196 18 C -0.212 4.212 19 C -0.156 4.156 20 C -0.078 4.078 21 C -0.226 4.226 22 C -0.225 4.225 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.019 0.981 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.119 0.881 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.026 0.974 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.518 -12.165 1.182 15.491 hybrid contribution 0.193 2.232 0.160 2.246 sum -9.325 -9.933 1.341 13.690 Atomic orbital electron populations 1.69956 1.06764 1.26842 1.49266 1.25587 0.95546 1.01656 0.94356 0.85655 0.79201 0.80114 0.77525 1.19535 1.20839 1.20628 1.20910 0.95007 0.91593 1.47375 0.93349 1.19038 0.95322 0.87924 0.95340 1.21675 0.91463 0.96201 0.95134 1.62041 1.12126 1.45853 1.04850 1.21840 0.94283 0.94400 0.94881 1.22298 0.96886 1.00443 0.97068 1.20560 0.89493 0.81103 0.96121 1.92794 1.79514 1.54209 1.94337 1.22747 1.02915 1.00250 0.94551 1.23227 0.99935 0.98152 0.98262 1.23000 0.96838 1.01616 0.99727 1.22070 0.96780 0.99356 0.97386 1.22089 0.95003 0.96995 0.93732 1.22972 0.99945 1.06785 0.92876 1.22774 0.95212 1.01467 1.03081 0.93169 0.91097 0.94574 0.98051 0.91009 0.88138 0.90900 0.85723 0.88082 0.86411 0.86960 0.89785 0.88102 0.89196 0.90142 0.97350 0.88282 0.93039 0.91635 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.36 10.75 21.45 0.23 -49.13 16 2 C 0.03 1.56 5.13 84.66 0.43 1.99 16 3 Si 0.95 43.22 29.56 68.60 2.03 45.25 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.51 -28.19 9.03 25.60 0.23 -27.96 16 8 H 0.05 2.70 7.86 -2.91 -0.02 2.67 16 9 C 0.02 1.22 2.14 -52.93 -0.11 1.11 16 10 C 0.08 3.94 4.85 86.30 0.42 4.36 16 11 N -0.52 -20.95 3.66 -896.38 -3.28 -24.23 16 12 C 0.07 3.03 4.15 86.32 0.36 3.39 16 13 C -0.13 -3.98 3.86 30.65 0.12 -3.86 16 14 C 0.15 4.08 1.06 -10.71 -0.01 4.07 16 15 F -0.23 -7.96 15.97 44.97 0.72 -7.24 16 16 C -0.19 -3.93 5.43 -10.79 -0.06 -3.98 16 17 C -0.16 -2.78 9.66 30.62 0.30 -2.49 16 18 C -0.17 -3.38 9.90 30.62 0.30 -3.08 16 19 C -0.12 -3.14 5.16 30.65 0.16 -2.98 16 20 C 0.05 1.72 5.32 86.33 0.46 2.18 16 21 C -0.19 -8.52 8.04 30.59 0.25 -8.28 16 22 C -0.19 -8.24 9.94 30.59 0.30 -7.93 16 23 H 0.26 13.85 8.32 -92.71 -0.77 13.07 16 24 H 0.07 3.87 4.92 -2.39 -0.01 3.86 16 25 H 0.04 1.67 7.82 -2.39 -0.02 1.65 16 26 H 0.00 0.06 7.87 -2.39 -0.02 0.04 16 27 H 0.07 3.32 5.53 -2.39 -0.01 3.30 16 28 H 0.10 2.79 6.59 -2.39 -0.02 2.78 16 29 H 0.07 2.17 7.11 -2.39 -0.02 2.15 16 30 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.10 1.90 5.84 -2.39 -0.01 1.89 16 32 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.86 7.34 -2.39 -0.02 1.84 16 35 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.08 2.56 7.94 -2.38 -0.02 2.54 16 38 H 0.01 0.32 7.87 -2.39 -0.02 0.30 16 39 H 0.10 4.18 5.49 -2.39 -0.01 4.17 16 40 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -59.16 320.57 3.83 -55.33 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.99 Total: 23.49 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 3.14 Total: -43.48 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -3.05 Total: -73.35 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 0.72 Total: -7.24 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -59.16 3.83 -55.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724834320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.449 kcal (2) G-P(sol) polarization free energy of solvation -59.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds