Wall clock time and date at job start Mon Mar 30 2020 07:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99561 * 2 1 4 4 H 1.48509 * 109.47231 * 269.99952 * 3 2 1 5 5 H 1.48501 * 109.47421 * 30.00053 * 3 2 1 6 6 H 1.48505 * 109.47388 * 150.00210 * 3 2 1 7 7 C 1.37877 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99606 * 181.88394 * 7 2 1 9 9 C 1.50698 * 120.00093 * 1.88530 * 7 2 1 10 10 C 1.53002 * 115.55076 * 84.68866 * 9 7 2 11 11 N 1.46896 * 109.46985 * 34.05112 * 10 9 7 12 12 C 1.46901 * 110.99876 * 185.19591 * 11 10 9 13 13 H 1.09000 * 109.47138 * 328.34914 * 12 11 10 14 14 C 1.53001 * 109.47157 * 88.34712 * 12 11 10 15 15 C 1.52997 * 109.47450 * 58.04911 * 14 12 11 16 16 O 1.42897 * 109.47568 * 184.32008 * 15 14 12 17 17 C 1.52999 * 109.47262 * 208.34318 * 12 11 10 18 18 C 1.54269 * 110.03194 * 177.90755 * 17 12 11 19 19 C 1.54966 * 104.15754 * 217.13846 * 18 17 12 20 20 C 1.54889 * 102.78042 * 37.88930 * 19 18 17 21 21 C 1.53876 * 110.03292 * 60.69245 * 17 12 11 22 22 C 1.52995 * 117.51715 * 230.38954 * 9 7 2 23 23 C 1.52995 * 60.00139 * 107.48018 * 22 9 7 24 24 H 0.96996 * 120.00241 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47201 * 154.05205 * 10 9 7 26 26 H 1.09003 * 109.46994 * 274.05275 * 10 9 7 27 27 H 1.00902 * 111.00226 * 61.24553 * 11 10 9 28 28 H 1.08994 * 109.47567 * 178.05569 * 14 12 11 29 29 H 1.09005 * 109.46941 * 298.05257 * 14 12 11 30 30 H 1.09000 * 109.47561 * 304.32859 * 15 14 12 31 31 H 1.09007 * 109.46840 * 64.32026 * 15 14 12 32 32 H 0.96695 * 114.00279 * 180.02562 * 16 15 14 33 33 H 1.08998 * 110.01608 * 299.29879 * 17 12 11 34 34 H 1.08995 * 110.48906 * 335.78737 * 18 17 12 35 35 H 1.09004 * 110.48279 * 98.42956 * 18 17 12 36 36 H 1.09000 * 110.72123 * 279.56924 * 19 18 17 37 37 H 1.09004 * 110.91862 * 156.30007 * 19 18 17 38 38 H 1.08989 * 110.48681 * 203.40388 * 20 19 18 39 39 H 1.09002 * 110.59255 * 80.81316 * 20 19 18 40 40 H 1.08997 * 110.03383 * 238.57365 * 21 17 12 41 41 H 1.09002 * 110.03021 * 359.95027 * 21 17 12 42 42 H 1.09000 * 117.49725 * 214.96964 * 22 9 7 43 43 H 1.09006 * 117.49963 * 359.97438 * 22 9 7 44 44 H 1.08997 * 117.49827 * 252.51088 * 23 22 9 45 45 H 1.08996 * 117.52125 * 107.48163 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1942 0.0302 9 6 1.2518 -2.4988 -0.0441 10 6 0.8507 -2.9830 -1.4389 11 7 1.8844 -2.5953 -2.4078 12 6 1.4761 -2.9350 -3.7775 13 1 0.8526 -3.8289 -3.7596 14 6 0.6829 -1.7718 -4.3765 15 6 1.5412 -0.5055 -4.3570 16 8 0.7674 0.6018 -4.8227 17 6 2.7191 -3.1971 -4.6301 18 6 2.3036 -3.6064 -6.0583 19 6 3.3446 -4.6807 -6.4627 20 6 3.5601 -5.4628 -5.1433 21 6 3.5180 -4.3767 -4.0486 22 6 1.6179 -3.5611 0.9943 23 6 0.2951 -2.8012 1.1110 24 1 -0.4850 0.8400 -0.0004 25 1 0.7484 -4.0681 -1.4313 26 1 -0.1000 -2.5304 -1.7212 27 1 2.7713 -3.0189 -2.1794 28 1 0.4095 -2.0097 -5.4044 29 1 -0.2205 -1.6075 -3.7891 30 1 1.8783 -0.3106 -3.3389 31 1 2.4062 -0.6428 -5.0059 32 1 1.2493 1.4400 -4.8375 33 1 3.3432 -2.3042 -4.6642 34 1 1.2994 -4.0300 -6.0568 35 1 2.3566 -2.7503 -6.7310 36 1 4.2732 -4.2137 -6.7911 37 1 2.9474 -5.3347 -7.2390 38 1 4.5294 -5.9611 -5.1492 39 1 2.7603 -6.1878 -4.9923 40 1 4.5301 -4.0564 -3.8012 41 1 3.0206 -4.7618 -3.1585 42 1 1.5730 -4.6049 0.6838 43 1 2.4038 -3.3165 1.7090 44 1 0.2105 -2.0567 1.9025 45 1 -0.6202 -3.3448 0.8772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725116212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:00 Heat of formation + Delta-G solvation = -45.726359 kcal Electronic energy + Delta-G solvation = -21941.185287 eV Core-core repulsion = 18958.331858 eV Total energy + Delta-G solvation = -2982.853429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.10885 -36.75577 -36.26433 -34.45689 -31.73059 -30.81143 -28.67241 -28.08836 -25.57618 -24.52589 -23.42594 -21.03858 -20.78037 -20.43916 -19.06619 -18.52203 -16.97214 -16.18505 -15.65838 -15.43125 -14.72291 -14.49373 -14.04389 -13.83895 -13.44836 -13.31445 -13.13162 -12.64324 -12.38233 -12.18473 -11.59750 -11.40718 -11.33127 -11.06132 -10.98672 -10.84479 -10.75455 -10.72782 -10.57054 -10.55140 -10.37923 -10.35500 -10.06278 -9.81289 -9.28380 -9.21191 -8.80706 -8.23362 -7.93286 -7.34251 -5.83662 -3.84865 3.38126 3.45273 3.47291 4.54236 4.59226 4.67540 4.74886 4.84212 5.07521 5.31245 5.41957 5.48954 5.49909 5.53177 5.65315 5.68126 5.77842 5.81587 5.85011 5.92320 6.03630 6.05704 6.11610 6.15749 6.23849 6.28440 6.33711 6.36797 6.47567 6.56622 6.59630 6.69067 6.74836 6.81510 6.86710 7.06382 7.19505 7.49865 7.59254 8.05246 8.11832 8.17047 8.34735 8.64357 9.10585 9.77344 11.26548 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.006990 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.482190 B = 4004.545760 C = 4952.619684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.461 4.461 8 H 0.054 0.946 9 C 0.048 3.952 10 C 0.110 3.890 11 N -0.652 5.652 12 C 0.096 3.904 13 H 0.037 0.963 14 C -0.099 4.099 15 C 0.081 3.919 16 O -0.583 6.583 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.221 4.221 23 C -0.154 4.154 24 H 0.255 0.745 25 H -0.007 1.007 26 H 0.065 0.935 27 H 0.334 0.666 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.371 0.629 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 -7.153 -10.792 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.126 4.126 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.047 3.953 10 C -0.019 4.019 11 N -0.283 5.283 12 C -0.014 4.014 13 H 0.055 0.945 14 C -0.137 4.137 15 C 0.004 3.996 16 O -0.388 6.388 17 C -0.115 4.115 18 C -0.154 4.154 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.258 4.258 23 C -0.192 4.192 24 H 0.065 0.935 25 H 0.011 0.989 26 H 0.084 0.916 27 H 0.153 0.847 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.216 0.784 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.315 -6.849 -10.865 13.549 hybrid contribution 0.878 0.398 0.130 0.973 sum 5.193 -6.450 -10.735 13.558 Atomic orbital electron populations 1.69979 1.05704 1.25840 1.50365 1.24810 0.94584 0.98240 0.94971 0.86748 0.79745 0.84361 0.77833 1.20873 1.21775 1.20363 1.20079 0.91787 0.88208 1.49866 0.92796 1.18902 0.97593 0.93169 0.85645 1.21495 0.94644 0.92802 0.92976 1.60313 1.05374 1.63562 0.99060 1.21531 0.94382 0.95153 0.90341 0.94477 1.21392 0.99256 0.93579 0.99470 1.22218 0.92155 0.85740 0.99530 1.86405 1.43601 1.19473 1.89318 1.22013 0.96740 0.98336 0.94365 1.22417 0.98828 0.98199 0.95979 1.22504 0.99150 0.97503 0.97064 1.22337 1.01081 0.97668 0.94974 1.22243 1.00368 0.95349 0.98232 1.23099 1.00126 0.95457 1.07117 1.22455 0.90814 1.01424 1.04497 0.93493 0.98935 0.91635 0.84724 0.92750 0.91283 0.90333 0.95379 0.78409 0.90174 0.91592 0.91811 0.91771 0.92042 0.92118 0.91981 0.91688 0.91737 0.92293 0.90711 0.89937 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.08 12.73 55.43 0.71 -24.38 16 2 C 0.08 2.07 5.43 -17.82 -0.10 1.97 16 3 Si 0.88 21.39 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.46 -12.20 8.03 -34.44 -0.28 -12.48 16 8 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 9 C 0.05 1.14 1.84 -155.66 -0.29 0.86 16 10 C 0.11 2.39 5.58 -3.83 -0.02 2.37 16 11 N -0.65 -12.52 4.50 -106.73 -0.48 -13.00 16 12 C 0.10 1.56 1.57 -67.71 -0.11 1.45 16 13 H 0.04 0.61 7.79 -51.93 -0.40 0.21 16 14 C -0.10 -1.73 5.29 -26.73 -0.14 -1.87 16 15 C 0.08 1.46 6.52 37.16 0.24 1.70 16 16 O -0.58 -10.67 13.66 -35.23 -0.48 -11.15 16 17 C -0.10 -1.28 2.31 -89.50 -0.21 -1.48 16 18 C -0.12 -1.35 5.27 -25.03 -0.13 -1.48 16 19 C -0.12 -1.26 6.91 -24.70 -0.17 -1.43 16 20 C -0.12 -1.30 6.83 -25.07 -0.17 -1.47 16 21 C -0.12 -1.53 5.58 -25.61 -0.14 -1.67 16 22 C -0.22 -4.80 9.88 -26.74 -0.26 -5.07 16 23 C -0.15 -3.65 9.26 -26.73 -0.25 -3.90 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H -0.01 -0.15 7.90 -51.93 -0.41 -0.56 16 26 H 0.07 1.59 7.61 -51.93 -0.40 1.19 16 27 H 0.33 6.15 6.83 -39.29 -0.27 5.88 16 28 H 0.05 0.86 7.16 -51.93 -0.37 0.48 16 29 H 0.07 1.41 7.66 -51.93 -0.40 1.02 16 30 H 0.08 1.68 7.41 -51.93 -0.38 1.30 16 31 H 0.03 0.44 6.70 -51.93 -0.35 0.10 16 32 H 0.37 5.23 9.12 45.56 0.42 5.64 16 33 H 0.08 1.13 6.58 -51.93 -0.34 0.79 16 34 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.58 8.14 -51.94 -0.42 0.16 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.87 6.94 -51.93 -0.36 0.51 16 42 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 43 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 44 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -28.65 348.88 -9.47 -38.12 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.44 Total: 11.29 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -2.02 Total: -22.50 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.23 Total: -37.38 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.48 Total: -11.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.65 -9.47 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725116212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.602 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds