Wall clock time and date at job start Mon Mar 30 2020 07:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99561 * 2 1 4 4 H 1.48509 * 109.47231 * 269.99952 * 3 2 1 5 5 H 1.48501 * 109.47421 * 30.00053 * 3 2 1 6 6 H 1.48505 * 109.47388 * 150.00210 * 3 2 1 7 7 C 1.37877 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99606 * 181.88394 * 7 2 1 9 9 C 1.50698 * 120.00093 * 1.88530 * 7 2 1 10 10 C 1.53002 * 115.55076 * 84.68866 * 9 7 2 11 11 N 1.46896 * 109.46985 * 34.05112 * 10 9 7 12 12 C 1.46901 * 110.99876 * 185.19591 * 11 10 9 13 13 H 1.09000 * 109.47138 * 328.34914 * 12 11 10 14 14 C 1.53001 * 109.47157 * 88.34712 * 12 11 10 15 15 C 1.52997 * 109.47450 * 58.04911 * 14 12 11 16 16 O 1.42897 * 109.47568 * 184.32008 * 15 14 12 17 17 C 1.52999 * 109.47262 * 208.34318 * 12 11 10 18 18 C 1.54269 * 110.03194 * 177.90755 * 17 12 11 19 19 C 1.54966 * 104.15754 * 217.13846 * 18 17 12 20 20 C 1.54889 * 102.78042 * 37.88930 * 19 18 17 21 21 C 1.53876 * 110.03292 * 60.69245 * 17 12 11 22 22 C 1.52995 * 117.51715 * 230.38954 * 9 7 2 23 23 C 1.52995 * 60.00139 * 107.48018 * 22 9 7 24 24 H 0.96996 * 120.00241 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47201 * 154.05205 * 10 9 7 26 26 H 1.09003 * 109.46994 * 274.05275 * 10 9 7 27 27 H 1.00902 * 111.00226 * 61.24553 * 11 10 9 28 28 H 1.08994 * 109.47567 * 178.05569 * 14 12 11 29 29 H 1.09005 * 109.46941 * 298.05257 * 14 12 11 30 30 H 1.09000 * 109.47561 * 304.32859 * 15 14 12 31 31 H 1.09007 * 109.46840 * 64.32026 * 15 14 12 32 32 H 0.96695 * 114.00279 * 180.02562 * 16 15 14 33 33 H 1.08998 * 110.01608 * 299.29879 * 17 12 11 34 34 H 1.08995 * 110.48906 * 335.78737 * 18 17 12 35 35 H 1.09004 * 110.48279 * 98.42956 * 18 17 12 36 36 H 1.09000 * 110.72123 * 279.56924 * 19 18 17 37 37 H 1.09004 * 110.91862 * 156.30007 * 19 18 17 38 38 H 1.08989 * 110.48681 * 203.40388 * 20 19 18 39 39 H 1.09002 * 110.59255 * 80.81316 * 20 19 18 40 40 H 1.08997 * 110.03383 * 238.57365 * 21 17 12 41 41 H 1.09002 * 110.03021 * 359.95027 * 21 17 12 42 42 H 1.09000 * 117.49725 * 214.96964 * 22 9 7 43 43 H 1.09006 * 117.49963 * 359.97438 * 22 9 7 44 44 H 1.08997 * 117.49827 * 252.51088 * 23 22 9 45 45 H 1.08996 * 117.52125 * 107.48163 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1942 0.0302 9 6 1.2518 -2.4988 -0.0441 10 6 0.8507 -2.9830 -1.4389 11 7 1.8844 -2.5953 -2.4078 12 6 1.4761 -2.9350 -3.7775 13 1 0.8526 -3.8289 -3.7596 14 6 0.6829 -1.7718 -4.3765 15 6 1.5412 -0.5055 -4.3570 16 8 0.7674 0.6018 -4.8227 17 6 2.7191 -3.1971 -4.6301 18 6 2.3036 -3.6064 -6.0583 19 6 3.3446 -4.6807 -6.4627 20 6 3.5601 -5.4628 -5.1433 21 6 3.5180 -4.3767 -4.0486 22 6 1.6179 -3.5611 0.9943 23 6 0.2951 -2.8012 1.1110 24 1 -0.4850 0.8400 -0.0004 25 1 0.7484 -4.0681 -1.4313 26 1 -0.1000 -2.5304 -1.7212 27 1 2.7713 -3.0189 -2.1794 28 1 0.4095 -2.0097 -5.4044 29 1 -0.2205 -1.6075 -3.7891 30 1 1.8783 -0.3106 -3.3389 31 1 2.4062 -0.6428 -5.0059 32 1 1.2493 1.4400 -4.8375 33 1 3.3432 -2.3042 -4.6642 34 1 1.2994 -4.0300 -6.0568 35 1 2.3566 -2.7503 -6.7310 36 1 4.2732 -4.2137 -6.7911 37 1 2.9474 -5.3347 -7.2390 38 1 4.5294 -5.9611 -5.1492 39 1 2.7603 -6.1878 -4.9923 40 1 4.5301 -4.0564 -3.8012 41 1 3.0206 -4.7618 -3.1585 42 1 1.5730 -4.6049 0.6838 43 1 2.4038 -3.3165 1.7090 44 1 0.2105 -2.0567 1.9025 45 1 -0.6202 -3.3448 0.8772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725116212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:00 Heat of formation + Delta-G solvation = -63.235054 kcal Electronic energy + Delta-G solvation = -21941.944521 eV Core-core repulsion = 18958.331858 eV Total energy + Delta-G solvation = -2983.612663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.30050 -38.44834 -37.66231 -35.84513 -33.81091 -32.27610 -29.69725 -29.14610 -27.52676 -26.14718 -24.91015 -22.86186 -22.00368 -21.31953 -20.92410 -19.80610 -18.37027 -17.94457 -17.14613 -16.56472 -16.46078 -16.00398 -15.59415 -15.29503 -15.04589 -14.64162 -14.30339 -14.15931 -13.88263 -13.58262 -13.26187 -13.08582 -12.79389 -12.70771 -12.61166 -12.33857 -12.05421 -11.94772 -11.91706 -11.81564 -11.73309 -11.53790 -11.39561 -11.17313 -11.04500 -10.77516 -10.65038 -10.25710 -9.82401 -8.87586 -7.93534 -5.98279 1.43738 1.45409 1.52972 2.52873 3.32552 3.40372 3.48374 3.58124 3.71559 3.76912 3.94720 4.23049 4.30917 4.46377 4.47726 4.54166 4.56415 4.61128 4.67562 4.73544 4.78367 4.79858 4.84444 4.87511 4.92391 5.01666 5.03127 5.13472 5.14269 5.16247 5.23292 5.31025 5.33163 5.41006 5.44010 5.51763 5.56233 5.69105 5.70027 5.92529 6.44445 6.64108 6.88212 6.91038 7.03692 7.66199 9.15737 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.006990 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.482190 B = 4004.545760 C = 4952.619684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.032 3.968 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.460 4.460 8 H 0.048 0.952 9 C 0.022 3.978 10 C 0.126 3.874 11 N -0.662 5.662 12 C 0.103 3.897 13 H 0.037 0.963 14 C -0.095 4.095 15 C 0.087 3.913 16 O -0.600 6.600 17 C -0.090 4.090 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.192 4.192 23 C -0.165 4.165 24 H 0.250 0.750 25 H 0.009 0.991 26 H 0.031 0.969 27 H 0.339 0.661 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.388 0.612 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 -8.328 -12.346 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.167 4.167 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.499 4.499 8 H 0.066 0.934 9 C 0.021 3.979 10 C -0.004 4.004 11 N -0.294 5.294 12 C -0.007 4.007 13 H 0.055 0.945 14 C -0.133 4.133 15 C 0.010 3.990 16 O -0.407 6.407 17 C -0.108 4.108 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.229 4.229 23 C -0.203 4.203 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.159 0.841 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.014 -8.021 -12.422 15.963 hybrid contribution 0.360 0.764 0.631 1.054 sum 6.374 -7.258 -11.791 15.242 Atomic orbital electron populations 1.70108 1.06927 1.25935 1.52093 1.25394 0.95148 1.00975 0.95186 0.85927 0.78761 0.81110 0.77893 1.20342 1.22244 1.19688 1.20286 0.91578 0.89440 1.48550 0.93421 1.19072 0.98186 0.93517 0.87098 1.21168 0.93762 0.93197 0.92250 1.60170 1.04995 1.64156 1.00042 1.21519 0.95735 0.94366 0.89129 0.94509 1.21382 0.97790 0.94174 0.99983 1.22100 0.93035 0.85824 0.98013 1.86369 1.44637 1.20581 1.89102 1.21949 0.95135 0.98715 0.95043 1.22415 0.99295 0.99007 0.94622 1.22486 0.98962 0.97034 0.97120 1.22330 1.01895 0.97125 0.94398 1.22226 1.00111 0.95453 0.98364 1.23078 0.98327 0.96251 1.05214 1.22346 0.92220 1.01805 1.03909 0.94129 0.97323 0.95028 0.84095 0.90671 0.95202 0.94098 0.92501 0.76434 0.90757 0.91810 0.91327 0.90990 0.90625 0.90780 0.91983 0.91264 0.93023 0.89454 0.90631 0.92567 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.41 12.73 21.45 0.27 -53.13 16 2 C 0.03 1.75 5.43 84.66 0.46 2.21 16 3 Si 0.94 44.42 29.54 68.60 2.03 46.44 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.46 -24.54 8.03 25.60 0.21 -24.33 16 8 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 9 C 0.02 1.06 1.84 -52.93 -0.10 0.96 16 10 C 0.13 5.50 5.58 86.30 0.48 5.98 16 11 N -0.66 -25.34 4.50 -491.57 -2.21 -27.56 16 12 C 0.10 3.25 1.57 44.92 0.07 3.32 16 13 H 0.04 1.18 7.79 -2.39 -0.02 1.17 16 14 C -0.09 -3.33 5.29 30.59 0.16 -3.16 16 15 C 0.09 3.12 6.52 71.98 0.47 3.59 16 16 O -0.60 -21.64 13.66 -148.98 -2.03 -23.67 16 17 C -0.09 -2.22 2.31 -10.07 -0.02 -2.24 16 18 C -0.12 -2.36 5.27 31.70 0.17 -2.20 16 19 C -0.12 -1.98 6.91 31.91 0.22 -1.76 16 20 C -0.12 -2.16 6.83 31.67 0.22 -1.95 16 21 C -0.12 -2.77 5.58 31.32 0.17 -2.60 16 22 C -0.19 -8.07 9.88 30.59 0.30 -7.76 16 23 C -0.16 -7.88 9.26 30.59 0.28 -7.59 16 24 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.01 0.35 7.90 -2.39 -0.02 0.33 16 26 H 0.03 1.58 7.61 -2.39 -0.02 1.56 16 27 H 0.34 12.24 6.83 -89.69 -0.61 11.63 16 28 H 0.07 2.29 7.16 -2.39 -0.02 2.27 16 29 H 0.03 1.26 7.66 -2.38 -0.02 1.24 16 30 H 0.04 1.77 7.41 -2.39 -0.02 1.75 16 31 H 0.06 1.70 6.70 -2.38 -0.02 1.68 16 32 H 0.39 10.59 9.12 -74.06 -0.68 9.92 16 33 H 0.07 1.94 6.58 -2.39 -0.02 1.93 16 34 H 0.06 1.35 7.73 -2.39 -0.02 1.33 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.29 6.94 -2.39 -0.02 1.27 16 42 H 0.09 3.19 8.05 -2.39 -0.02 3.17 16 43 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 44 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -62.05 348.88 0.81 -61.24 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.33 Total: 34.21 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.09 Total: -37.53 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -1.94 Total: -80.69 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -2.03 Total: -23.67 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -62.05 0.81 -61.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725116212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.996 kcal (2) G-P(sol) polarization free energy of solvation -62.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds