Wall clock time and date at job start Mon Mar 30 2020 06:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46780 * 2 1 4 4 C 1.52998 * 109.47395 * 120.00065 * 2 1 3 5 5 N 1.46499 * 109.47000 * 174.31505 * 4 2 1 6 6 C 1.46499 * 119.99719 * 276.27680 * 5 4 2 7 7 C 1.50700 * 109.47538 * 237.22610 * 6 5 4 8 8 H 1.08007 * 119.99358 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00432 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00098 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00173 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46939 * 90.00039 * 11 9 7 13 13 H 1.48501 * 109.47505 * 210.00157 * 11 9 7 14 14 H 1.48503 * 109.47276 * 330.00369 * 11 9 7 15 15 C 1.34776 * 120.00259 * 96.28304 * 5 4 2 16 16 O 1.21742 * 119.99328 * 10.78011 * 15 5 4 17 17 C 1.41789 * 120.00179 * 190.78269 * 15 5 4 18 18 C 1.33455 * 118.78870 * 195.27485 * 17 15 5 19 19 O 1.34349 * 123.08209 * 180.15723 * 18 17 15 20 20 C 1.45354 * 117.48136 * 343.65205 * 19 18 17 21 21 C 1.53480 * 108.26612 * 47.47466 * 20 19 18 22 22 C 1.50422 * 118.78614 * 15.00622 * 17 15 5 23 23 H 1.08994 * 109.46776 * 300.00095 * 1 2 3 24 24 H 1.09002 * 109.46811 * 59.99764 * 1 2 3 25 25 H 1.09001 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46800 * 240.00610 * 2 1 3 27 27 H 1.09003 * 109.46449 * 186.45808 * 3 2 1 28 28 H 1.08999 * 109.47240 * 306.45426 * 3 2 1 29 29 H 1.08991 * 109.47096 * 66.45591 * 3 2 1 30 30 H 1.08997 * 109.46772 * 54.31161 * 4 2 1 31 31 H 1.09004 * 109.47001 * 294.31380 * 4 2 1 32 32 H 1.08998 * 109.47624 * 357.22941 * 6 5 4 33 33 H 1.09005 * 109.46970 * 117.22690 * 6 5 4 34 34 H 0.97003 * 120.00351 * 179.97438 * 10 9 7 35 35 H 1.07999 * 118.45969 * 0.13092 * 18 17 15 36 36 H 1.08999 * 109.70882 * 167.16635 * 20 19 18 37 37 H 1.08998 * 109.70430 * 287.74329 * 20 19 18 38 38 H 1.09004 * 109.70607 * 56.99033 * 21 20 19 39 39 H 1.09006 * 109.70858 * 177.60929 * 21 20 19 40 40 H 1.08998 * 109.45181 * 282.63569 * 22 17 15 41 41 H 1.08998 * 109.45604 * 42.57857 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4987 -0.8408 1.1827 6 6 4.1099 -1.9429 0.4356 7 6 5.0082 -2.7335 1.3516 8 1 5.1129 -2.4441 2.3869 9 6 5.6963 -3.8260 0.8682 10 7 5.5691 -4.1780 -0.3926 11 14 6.8103 -4.8055 2.0035 12 1 6.0295 -5.8935 2.6452 13 1 7.9247 -5.3933 1.2175 14 1 7.3621 -3.9085 3.0504 15 6 4.2782 0.0629 1.8088 16 8 3.7836 0.8584 2.5864 17 6 5.6742 0.0873 1.5617 18 6 6.4636 0.7622 2.3998 19 8 7.7957 0.8448 2.2464 20 6 8.4283 -0.1102 1.3516 21 6 7.6230 -0.1524 0.0458 22 6 6.2116 -0.6536 0.3680 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1239 1.4447 -0.1156 28 1 1.5854 1.9887 -0.8266 29 1 1.7741 1.9219 0.9420 30 1 1.5960 -1.7153 1.3015 31 1 1.7623 -0.1520 2.1363 32 1 3.3284 -2.5933 0.0430 33 1 4.6967 -1.5406 -0.3903 34 1 6.0535 -4.9465 -0.7329 35 1 6.0102 1.2659 3.2407 36 1 9.4510 0.2036 1.1426 37 1 8.4340 -1.0978 1.8127 38 1 7.5683 0.8475 -0.3848 39 1 8.1020 -0.8314 -0.6597 40 1 6.2466 -1.7205 0.5885 41 1 5.5607 -0.4815 -0.4893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730775316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:13 Heat of formation + Delta-G solvation = -44.992254 kcal Electronic energy + Delta-G solvation = -22128.733566 eV Core-core repulsion = 19010.078876 eV Total energy + Delta-G solvation = -3118.654690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15387 -38.52949 -35.94523 -35.03782 -32.67134 -32.37464 -30.88026 -27.82627 -26.82593 -25.91158 -24.75632 -23.38947 -22.81754 -20.21066 -19.16509 -18.11296 -16.98534 -16.24469 -15.81203 -15.43679 -15.00715 -14.61471 -14.38706 -14.07561 -13.69820 -13.35821 -13.14253 -12.82346 -12.75813 -12.32161 -12.15648 -11.94733 -11.92199 -11.44264 -11.23046 -11.07161 -10.95217 -10.80504 -10.62190 -10.47934 -10.31354 -10.17214 -10.06676 -9.72610 -9.32736 -8.86013 -8.56674 -7.76932 -7.32924 -6.29177 -4.26141 2.22856 3.14941 3.23328 3.27030 3.79545 4.10012 4.26916 4.30486 5.00468 5.25097 5.29545 5.31235 5.36936 5.47012 5.58377 5.79156 5.85993 5.91040 5.93971 6.00970 6.07049 6.15172 6.17928 6.28089 6.32361 6.35837 6.39381 6.63117 6.64875 6.75096 6.84693 6.88397 7.05003 7.30779 7.54105 7.60979 7.73421 7.88217 8.13534 8.40618 8.76256 9.17458 9.30035 10.75511 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.008954 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.301980 B = 3126.339058 C = 4279.642763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.120 3.880 5 N -0.598 5.598 6 C 0.212 3.788 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.062 3.938 10 N -0.884 5.884 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.578 3.422 16 O -0.591 6.591 17 C -0.249 4.249 18 C 0.099 3.901 19 O -0.323 6.323 20 C 0.056 3.944 21 C -0.156 4.156 22 C -0.127 4.127 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.267 0.733 35 H 0.165 0.835 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.170 0.830 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 5.662 -1.038 5.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.194 4.194 4 C -0.004 4.004 5 N -0.328 5.328 6 C 0.093 3.907 7 C -0.555 4.555 8 H 0.082 0.918 9 C -0.142 4.142 10 N -0.521 5.521 11 Si 0.715 3.285 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.195 1.195 15 C 0.372 3.628 16 O -0.477 6.477 17 C -0.253 4.253 18 C 0.032 3.968 19 O -0.235 6.235 20 C -0.018 4.018 21 C -0.194 4.194 22 C -0.162 4.162 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.182 0.818 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.186 0.814 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.570 6.022 -0.727 6.093 hybrid contribution 0.486 -0.953 0.292 1.109 sum -0.084 5.069 -0.435 5.089 Atomic orbital electron populations 1.21754 0.95318 1.01474 1.01364 1.21521 0.95182 0.96951 0.99570 1.21732 1.01054 0.95620 1.01006 1.21390 0.81504 1.00019 0.97464 1.47994 1.05009 1.27707 1.52062 1.20246 0.94235 0.83626 0.92613 1.21350 1.25614 1.11499 0.97054 0.91844 1.24906 0.97304 0.96680 0.95290 1.69925 1.42007 1.26905 1.13283 0.86624 0.80403 0.80628 0.80873 1.20317 1.20800 1.19502 1.16587 0.86883 0.79992 0.79376 1.90670 1.76575 1.42924 1.37483 1.20108 0.94487 1.08360 1.02345 1.22538 0.81697 0.95696 0.96833 1.86129 1.19274 1.54718 1.63416 1.23412 0.95750 0.92417 0.90212 1.22258 0.98983 1.01427 0.96731 1.22130 0.92162 1.07562 0.94346 0.92831 0.92976 0.92747 0.91103 0.92972 0.93729 0.92570 0.91464 0.90517 0.94762 0.92434 0.92301 0.81814 0.88746 0.91176 0.92417 0.90541 0.81434 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 2 C -0.11 -1.79 3.11 -90.61 -0.28 -2.07 16 3 C -0.14 -2.21 8.50 37.16 0.32 -1.90 16 4 C 0.12 2.22 4.94 -4.04 -0.02 2.20 16 5 N -0.60 -12.73 2.48 -178.42 -0.44 -13.17 16 6 C 0.21 4.87 4.89 -5.19 -0.03 4.85 16 7 C -0.52 -12.73 5.71 -34.44 -0.20 -12.92 16 8 H 0.06 1.65 7.32 -52.48 -0.38 1.27 16 9 C 0.06 1.53 4.59 -17.82 -0.08 1.44 16 10 N -0.88 -22.62 13.29 55.43 0.74 -21.89 16 11 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 C 0.58 12.80 5.44 -14.90 -0.08 12.72 16 16 O -0.59 -13.86 15.33 5.15 0.08 -13.78 16 17 C -0.25 -5.19 4.83 -105.07 -0.51 -5.70 16 18 C 0.10 1.91 10.44 29.06 0.30 2.21 16 19 O -0.32 -5.78 10.48 -14.88 -0.16 -5.94 16 20 C 0.06 0.90 7.15 37.41 0.27 1.17 16 21 C -0.16 -2.64 6.23 -26.38 -0.16 -2.80 16 22 C -0.13 -2.58 3.69 -27.91 -0.10 -2.68 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.95 7.12 -51.93 -0.37 0.58 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.20 8.03 -51.93 -0.42 0.79 16 31 H 0.08 1.47 7.15 -51.93 -0.37 1.10 16 32 H 0.03 0.83 7.86 -51.93 -0.41 0.42 16 33 H 0.06 1.35 4.28 -51.93 -0.22 1.13 16 34 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.17 3.05 7.31 -52.49 -0.38 2.67 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.17 3.84 3.19 -55.26 -0.18 3.66 16 41 H 0.07 1.55 5.98 -51.93 -0.31 1.24 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -26.84 319.12 -6.63 -33.47 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.41 Total: 6.89 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.23 Total: -4.96 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.29 Total: -35.06 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.08 Total: -19.72 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.84 -6.63 -33.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730775316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.524 kcal (2) G-P(sol) polarization free energy of solvation -26.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds