Wall clock time and date at job start Mon Mar 30 2020 06:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46780 * 2 1 4 4 C 1.52998 * 109.47395 * 120.00065 * 2 1 3 5 5 N 1.46499 * 109.47000 * 174.31505 * 4 2 1 6 6 C 1.46499 * 119.99719 * 276.27680 * 5 4 2 7 7 C 1.50700 * 109.47538 * 237.22610 * 6 5 4 8 8 H 1.08007 * 119.99358 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00432 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00098 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00173 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46939 * 90.00039 * 11 9 7 13 13 H 1.48501 * 109.47505 * 210.00157 * 11 9 7 14 14 H 1.48503 * 109.47276 * 330.00369 * 11 9 7 15 15 C 1.34776 * 120.00259 * 96.28304 * 5 4 2 16 16 O 1.21742 * 119.99328 * 10.78011 * 15 5 4 17 17 C 1.41789 * 120.00179 * 190.78269 * 15 5 4 18 18 C 1.33455 * 118.78870 * 195.27485 * 17 15 5 19 19 O 1.34349 * 123.08209 * 180.15723 * 18 17 15 20 20 C 1.45354 * 117.48136 * 343.65205 * 19 18 17 21 21 C 1.53480 * 108.26612 * 47.47466 * 20 19 18 22 22 C 1.50422 * 118.78614 * 15.00622 * 17 15 5 23 23 H 1.08994 * 109.46776 * 300.00095 * 1 2 3 24 24 H 1.09002 * 109.46811 * 59.99764 * 1 2 3 25 25 H 1.09001 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46800 * 240.00610 * 2 1 3 27 27 H 1.09003 * 109.46449 * 186.45808 * 3 2 1 28 28 H 1.08999 * 109.47240 * 306.45426 * 3 2 1 29 29 H 1.08991 * 109.47096 * 66.45591 * 3 2 1 30 30 H 1.08997 * 109.46772 * 54.31161 * 4 2 1 31 31 H 1.09004 * 109.47001 * 294.31380 * 4 2 1 32 32 H 1.08998 * 109.47624 * 357.22941 * 6 5 4 33 33 H 1.09005 * 109.46970 * 117.22690 * 6 5 4 34 34 H 0.97003 * 120.00351 * 179.97438 * 10 9 7 35 35 H 1.07999 * 118.45969 * 0.13092 * 18 17 15 36 36 H 1.08999 * 109.70882 * 167.16635 * 20 19 18 37 37 H 1.08998 * 109.70430 * 287.74329 * 20 19 18 38 38 H 1.09004 * 109.70607 * 56.99033 * 21 20 19 39 39 H 1.09006 * 109.70858 * 177.60929 * 21 20 19 40 40 H 1.08998 * 109.45181 * 282.63569 * 22 17 15 41 41 H 1.08998 * 109.45604 * 42.57857 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4987 -0.8408 1.1827 6 6 4.1099 -1.9429 0.4356 7 6 5.0082 -2.7335 1.3516 8 1 5.1129 -2.4441 2.3869 9 6 5.6963 -3.8260 0.8682 10 7 5.5691 -4.1780 -0.3926 11 14 6.8103 -4.8055 2.0035 12 1 6.0295 -5.8935 2.6452 13 1 7.9247 -5.3933 1.2175 14 1 7.3621 -3.9085 3.0504 15 6 4.2782 0.0629 1.8088 16 8 3.7836 0.8584 2.5864 17 6 5.6742 0.0873 1.5617 18 6 6.4636 0.7622 2.3998 19 8 7.7957 0.8448 2.2464 20 6 8.4283 -0.1102 1.3516 21 6 7.6230 -0.1524 0.0458 22 6 6.2116 -0.6536 0.3680 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1239 1.4447 -0.1156 28 1 1.5854 1.9887 -0.8266 29 1 1.7741 1.9219 0.9420 30 1 1.5960 -1.7153 1.3015 31 1 1.7623 -0.1520 2.1363 32 1 3.3284 -2.5933 0.0430 33 1 4.6967 -1.5406 -0.3903 34 1 6.0535 -4.9465 -0.7329 35 1 6.0102 1.2659 3.2407 36 1 9.4510 0.2036 1.1426 37 1 8.4340 -1.0978 1.8127 38 1 7.5683 0.8475 -0.3848 39 1 8.1020 -0.8314 -0.6597 40 1 6.2466 -1.7205 0.5885 41 1 5.5607 -0.4815 -0.4893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730775316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:12 Heat of formation + Delta-G solvation = -59.336860 kcal Electronic energy + Delta-G solvation = -22129.355595 eV Core-core repulsion = 19010.078876 eV Total energy + Delta-G solvation = -3119.276719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76372 -40.06579 -37.53296 -36.63077 -34.30346 -34.06547 -32.34955 -29.60877 -28.07415 -27.39247 -26.30370 -25.13672 -24.38414 -21.63480 -20.63875 -19.69840 -18.78100 -17.93951 -17.42253 -16.96269 -16.53857 -16.40992 -15.86085 -15.44237 -15.26544 -14.86724 -14.64173 -14.34952 -14.29961 -14.02932 -13.65605 -13.54762 -13.12615 -12.86576 -12.81811 -12.73212 -12.49986 -12.29034 -12.18747 -11.87279 -11.86347 -11.67814 -11.55043 -11.48647 -10.97584 -10.59948 -10.39173 -9.44578 -8.98460 -8.19727 -6.21206 0.61639 1.38546 1.43696 1.51211 2.27649 2.39326 2.59360 2.63838 3.08326 3.86074 3.94376 4.00636 4.05794 4.15977 4.18178 4.41438 4.42567 4.50273 4.65848 4.70740 4.74338 4.78542 4.86471 4.90896 4.94848 5.00805 5.06463 5.14139 5.19840 5.35171 5.39197 5.43672 5.46240 5.47887 5.67431 5.90684 5.92917 6.21108 6.43572 6.58668 6.90124 7.31139 7.51223 8.84507 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.008954 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.301980 B = 3126.339058 C = 4279.642763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.129 4.129 4 C 0.115 3.885 5 N -0.601 5.601 6 C 0.228 3.772 7 C -0.517 4.517 8 H 0.045 0.955 9 C 0.031 3.969 10 N -0.906 5.906 11 Si 0.938 3.062 12 H -0.281 1.281 13 H -0.273 1.273 14 H -0.271 1.271 15 C 0.573 3.427 16 O -0.612 6.612 17 C -0.279 4.279 18 C 0.119 3.881 19 O -0.320 6.320 20 C 0.053 3.947 21 C -0.152 4.152 22 C -0.121 4.121 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.025 0.975 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.017 0.983 33 H 0.054 0.946 34 H 0.270 0.730 35 H 0.170 0.830 36 H 0.137 0.863 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 6.051 -1.194 6.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.187 4.187 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.108 3.892 7 C -0.555 4.555 8 H 0.063 0.937 9 C -0.170 4.170 10 N -0.545 5.545 11 Si 0.763 3.237 12 H -0.207 1.207 13 H -0.198 1.198 14 H -0.196 1.196 15 C 0.367 3.633 16 O -0.499 6.499 17 C -0.283 4.283 18 C 0.052 3.948 19 O -0.232 6.232 20 C -0.020 4.020 21 C -0.189 4.189 22 C -0.156 4.156 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.187 0.813 36 H 0.155 0.845 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.162 0.838 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.174 6.407 -0.892 6.471 hybrid contribution 0.279 -1.039 0.355 1.133 sum 0.453 5.368 -0.537 5.413 Atomic orbital electron populations 1.21704 0.92497 1.02394 1.02596 1.21467 0.97450 0.96206 0.97547 1.21658 0.99435 0.96025 1.01534 1.21579 0.80111 1.00458 0.98647 1.48017 1.06185 1.27151 1.51659 1.19969 0.93318 0.83530 0.92398 1.21288 1.26104 1.11930 0.96215 0.93663 1.25382 0.98135 0.97272 0.96223 1.69987 1.42776 1.27378 1.14333 0.85850 0.79176 0.79218 0.79414 1.20688 1.19788 1.19592 1.16829 0.87572 0.79774 0.79091 1.90640 1.77070 1.43711 1.38508 1.20162 0.94170 1.10299 1.03652 1.22642 0.82316 0.93870 0.95976 1.86145 1.18268 1.55038 1.63708 1.23679 0.97366 0.91973 0.88987 1.22224 0.96914 1.02135 0.97670 1.21827 0.94184 1.06049 0.93536 0.92240 0.91081 0.92041 0.91999 0.95620 0.91169 0.93445 0.91228 0.91263 0.96492 0.92848 0.92088 0.81339 0.84488 0.91971 0.91382 0.89238 0.83812 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.19 71.98 0.66 -2.56 16 2 C -0.11 -3.37 3.11 -10.79 -0.03 -3.40 16 3 C -0.13 -4.13 8.50 71.98 0.61 -3.52 16 4 C 0.12 4.33 4.94 86.38 0.43 4.75 16 5 N -0.60 -26.24 2.48 -836.60 -2.07 -28.31 16 6 C 0.23 10.74 4.89 85.63 0.42 11.16 16 7 C -0.52 -25.86 5.71 25.60 0.15 -25.71 16 8 H 0.05 2.40 7.32 -2.91 -0.02 2.38 16 9 C 0.03 1.55 4.59 84.65 0.39 1.94 16 10 N -0.91 -46.48 13.29 21.44 0.28 -46.20 16 11 Si 0.94 39.85 29.54 68.60 2.03 41.88 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 15 C 0.57 25.85 5.44 85.12 0.46 26.32 16 16 O -0.61 -29.16 15.33 -4.48 -0.07 -29.23 16 17 C -0.28 -11.67 4.83 -20.16 -0.10 -11.77 16 18 C 0.12 4.51 10.44 66.74 0.70 5.21 16 19 O -0.32 -10.75 10.48 -76.18 -0.80 -11.55 16 20 C 0.05 1.57 7.15 72.14 0.52 2.08 16 21 C -0.15 -4.86 6.23 30.82 0.19 -4.66 16 22 C -0.12 -4.90 3.69 29.83 0.11 -4.79 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.02 0.93 7.12 -2.39 -0.02 0.91 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 2.53 8.03 -2.39 -0.02 2.51 16 31 H 0.07 2.69 7.15 -2.39 -0.02 2.68 16 32 H 0.02 0.85 7.86 -2.39 -0.02 0.83 16 33 H 0.05 2.59 4.28 -2.38 -0.01 2.58 16 34 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 35 H 0.17 6.17 7.31 -2.91 -0.02 6.15 16 36 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.15 6.63 3.19 -5.52 -0.02 6.62 16 41 H 0.06 2.50 5.98 -2.39 -0.01 2.49 16 Total: -1.00 -57.20 319.12 4.87 -52.33 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 1.00 Total: 26.01 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 4.50 Total: -4.94 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.79 Total: -74.51 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.87 Total: -40.77 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -57.20 4.87 -52.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730775316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.008 kcal (2) G-P(sol) polarization free energy of solvation -57.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds