Wall clock time and date at job start Mon Mar 30 2020 07:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.08990 * 110.67111 * 56.75833 * 9 7 2 11 11 C 1.54893 * 110.75085 * 293.32612 * 9 7 2 12 12 C 1.54271 * 104.19271 * 203.74373 * 11 9 7 13 13 C 1.53872 * 106.59934 * 23.60787 * 12 11 9 14 14 H 1.08999 * 110.03408 * 240.71454 * 13 12 11 15 15 N 1.46902 * 110.03114 * 119.28583 * 13 12 11 16 16 C 1.46897 * 111.00035 * 87.83081 * 15 13 12 17 17 C 1.52999 * 109.47443 * 180.02562 * 16 15 13 18 18 O 1.42900 * 109.47098 * 64.99770 * 17 16 15 19 19 C 1.53000 * 109.47015 * 305.00400 * 17 16 15 20 20 C 1.52997 * 109.47239 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.47077 * 60.00061 * 20 19 17 22 22 C 1.53000 * 109.47036 * 300.00063 * 21 20 19 23 23 C 1.52993 * 109.47509 * 185.00424 * 17 16 15 24 24 C 1.54270 * 106.60098 * 0.02562 * 13 12 11 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09001 * 110.48386 * 322.41687 * 11 9 7 27 27 H 1.08995 * 110.48676 * 85.06559 * 11 9 7 28 28 H 1.08994 * 110.02995 * 264.32159 * 12 11 9 29 29 H 1.09002 * 110.02984 * 142.89540 * 12 11 9 30 30 H 1.00901 * 110.99929 * 211.78741 * 15 13 12 31 31 H 1.09003 * 109.47462 * 300.00087 * 16 15 13 32 32 H 1.08998 * 109.46825 * 60.00077 * 16 15 13 33 33 H 0.96699 * 114.00483 * 300.00388 * 18 17 16 34 34 H 1.09006 * 109.47299 * 299.99937 * 19 17 16 35 35 H 1.08998 * 109.47651 * 59.99472 * 19 17 16 36 36 H 1.08994 * 109.47504 * 300.00005 * 20 19 17 37 37 H 1.09003 * 109.47297 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.47342 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47081 * 60.00173 * 21 20 19 40 40 H 1.09009 * 109.46958 * 300.00176 * 22 21 20 41 41 H 1.08998 * 109.47651 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.46786 * 299.99972 * 23 17 16 43 43 H 1.08997 * 109.47495 * 59.99420 * 23 17 16 44 44 H 1.08993 * 110.48632 * 217.71298 * 24 13 12 45 45 H 1.08998 * 110.60091 * 95.11941 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.5711 -2.5508 -0.8561 11 6 0.4854 -2.6910 1.3269 12 6 0.3028 -4.2186 1.4417 13 6 1.4126 -4.8592 0.5899 14 1 0.9725 -5.4590 -0.2067 15 7 2.2744 -5.6974 1.4342 16 6 1.7448 -7.0639 1.5342 17 6 2.6666 -7.9046 2.4198 18 8 2.6439 -7.3918 3.7533 19 6 4.0945 -7.8422 1.8737 20 6 5.0165 -8.6824 2.7595 21 6 4.5352 -10.1348 2.7638 22 6 3.1073 -10.1972 3.3098 23 6 2.1851 -9.3568 2.4235 24 6 2.2313 -3.6987 -0.0124 25 1 -0.4850 -0.8400 0.0004 26 1 1.0742 -2.3133 2.1628 27 1 -0.4833 -2.1930 1.2854 28 1 -0.6758 -4.5074 1.0585 29 1 0.4037 -4.5295 2.4816 30 1 3.2231 -5.7015 1.0907 31 1 0.7471 -7.0357 1.9725 32 1 1.6924 -7.5069 0.5397 33 1 2.9375 -6.4733 3.8267 34 1 4.1119 -8.2333 0.8564 35 1 4.4376 -6.8076 1.8709 36 1 4.9991 -8.2909 3.7766 37 1 6.0337 -8.6383 2.3702 38 1 5.1918 -10.7333 3.3952 39 1 4.5527 -10.5263 1.7467 40 1 3.0899 -9.8056 4.3270 41 1 2.7645 -11.2319 3.3133 42 1 1.1679 -9.4013 2.8125 43 1 2.2024 -9.7480 1.4063 44 1 2.5365 -3.9358 -1.0315 45 1 3.1029 -3.4831 0.6055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842154342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:56 Heat of formation + Delta-G solvation = -90.085799 kcal Electronic energy + Delta-G solvation = -21293.491587 eV Core-core repulsion = 18308.714588 eV Total energy + Delta-G solvation = -2984.776999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.81343 -37.77525 -35.26789 -34.17187 -32.14717 -31.04411 -29.94254 -28.13202 -26.65667 -24.45978 -23.62472 -22.69370 -21.18231 -19.84362 -19.61051 -19.01881 -16.81272 -16.44797 -16.00516 -15.58294 -15.20963 -14.51939 -14.14507 -13.96805 -13.71778 -13.70236 -13.24430 -13.02098 -12.51861 -12.40429 -12.30020 -11.91851 -11.78413 -11.61912 -11.23583 -10.91115 -10.89547 -10.72881 -10.67207 -10.58105 -10.42834 -10.13223 -10.06101 -9.94294 -9.68866 -9.62003 -9.31965 -8.41120 -8.28749 -8.21649 -6.28201 -3.99567 3.46095 3.47767 3.66387 4.17491 4.28297 4.56854 4.57529 4.62680 4.70805 4.97494 5.13902 5.15119 5.27013 5.34550 5.39180 5.41498 5.48142 5.50608 5.59992 5.67626 5.75767 5.79677 5.82521 5.85520 6.01484 6.02641 6.09695 6.16079 6.21555 6.32576 6.36849 6.50420 6.64563 6.73749 6.82724 6.95445 7.12082 7.36693 7.44047 7.60994 7.73877 7.81219 8.31131 8.49455 8.94581 9.72204 11.10043 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039233 B = 0.003644 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.514025 B = 7681.876562 C = 8006.426224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.019 3.981 3 Si 1.066 2.934 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.592 4.592 8 H 0.047 0.953 9 C 0.036 3.964 10 H 0.021 0.979 11 C -0.112 4.112 12 C -0.114 4.114 13 C 0.084 3.916 14 H 0.034 0.966 15 N -0.683 5.683 16 C 0.031 3.969 17 C 0.142 3.858 18 O -0.554 6.554 19 C -0.149 4.149 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.105 4.105 24 C -0.111 4.111 25 H 0.272 0.728 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.336 0.664 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.383 0.617 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 -19.158 4.372 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.185 4.185 3 Si 0.895 3.105 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.630 4.630 8 H 0.065 0.935 9 C 0.017 3.983 10 H 0.039 0.961 11 C -0.150 4.150 12 C -0.152 4.152 13 C -0.025 4.025 14 H 0.052 0.948 15 N -0.315 5.315 16 C -0.099 4.099 17 C 0.101 3.899 18 O -0.361 6.361 19 C -0.187 4.187 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.149 4.149 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.992 -17.899 5.078 19.546 hybrid contribution 0.567 -1.487 -1.155 1.966 sum 6.559 -19.386 3.923 20.838 Atomic orbital electron populations 1.70790 1.06851 1.30943 1.46526 1.25761 0.96579 1.02467 0.93732 0.83590 0.74924 0.75602 0.76433 1.20871 1.21502 1.21596 1.21937 0.93923 0.91520 1.55635 0.93452 1.19676 0.93026 0.92849 0.92721 0.96142 1.22501 1.00163 0.91721 1.00630 1.22229 0.95817 0.97917 0.99245 1.22277 0.94187 0.93564 0.92494 0.94824 1.60710 1.05721 1.09423 1.55674 1.22713 0.99652 0.89441 0.98103 1.21076 0.93017 0.92867 0.82942 1.86400 1.90041 1.33148 1.26504 1.22240 0.95925 1.00931 0.99606 1.21426 0.98018 0.94987 1.00684 1.21537 0.96577 0.96748 1.00776 1.21443 0.94537 0.98920 1.00283 1.21493 0.99754 0.92778 1.00262 1.22537 0.99213 0.95075 0.98054 0.91672 0.92615 0.93035 0.93755 0.92023 0.84477 0.90381 0.95098 0.76801 0.91632 0.90961 0.91238 0.92384 0.92261 0.92440 0.91000 0.92440 0.91345 0.91155 0.93819 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.57 13.49 55.43 0.75 -26.82 16 2 C 0.02 0.53 5.36 -17.82 -0.10 0.44 16 3 Si 1.07 25.26 29.90 -169.99 -5.08 20.18 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.59 -16.58 8.49 -34.44 -0.29 -16.87 16 8 H 0.05 1.32 7.77 -52.49 -0.41 0.91 16 9 C 0.04 0.90 2.38 -89.76 -0.21 0.69 16 10 H 0.02 0.55 7.91 -51.93 -0.41 0.14 16 11 C -0.11 -2.59 5.69 -25.07 -0.14 -2.73 16 12 C -0.11 -2.16 6.55 -25.61 -0.17 -2.33 16 13 C 0.08 1.46 3.25 -66.59 -0.22 1.25 16 14 H 0.03 0.58 7.81 -51.93 -0.41 0.17 16 15 N -0.68 -9.79 5.68 -105.54 -0.60 -10.39 16 16 C 0.03 0.39 4.76 -3.83 -0.02 0.37 16 17 C 0.14 1.56 0.79 -90.62 -0.07 1.49 16 18 O -0.55 -6.85 11.63 -35.23 -0.41 -7.26 16 19 C -0.15 -1.48 4.46 -26.73 -0.12 -1.60 16 20 C -0.11 -1.05 5.78 -26.73 -0.15 -1.20 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 22 C -0.11 -1.05 5.78 -26.71 -0.15 -1.21 16 23 C -0.10 -1.04 4.95 -26.71 -0.13 -1.17 16 24 C -0.11 -2.26 5.66 -25.06 -0.14 -2.40 16 25 H 0.27 8.10 5.56 -40.82 -0.23 7.87 16 26 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 27 H 0.05 1.26 6.67 -51.93 -0.35 0.92 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 30 H 0.34 4.53 6.20 -39.29 -0.24 4.28 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.38 4.47 8.66 45.56 0.39 4.86 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.75 6.51 -51.93 -0.34 0.41 16 36 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.75 7.68 -51.92 -0.40 0.36 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.36 7.85 -51.93 -0.41 0.95 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -29.38 337.60 -9.80 -39.18 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.46 Total: 6.50 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -2.08 Total: -26.47 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.15 Total: -37.22 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.41 Total: -7.26 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.38 -9.80 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842154342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.905 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds