Wall clock time and date at job start Mon Mar 30 2020 07:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.08990 * 110.67111 * 56.75833 * 9 7 2 11 11 C 1.54893 * 110.75085 * 293.32612 * 9 7 2 12 12 C 1.54271 * 104.19271 * 203.74373 * 11 9 7 13 13 C 1.53872 * 106.59934 * 23.60787 * 12 11 9 14 14 H 1.08999 * 110.03408 * 240.71454 * 13 12 11 15 15 N 1.46902 * 110.03114 * 119.28583 * 13 12 11 16 16 C 1.46897 * 111.00035 * 87.83081 * 15 13 12 17 17 C 1.52999 * 109.47443 * 180.02562 * 16 15 13 18 18 O 1.42900 * 109.47098 * 64.99770 * 17 16 15 19 19 C 1.53000 * 109.47015 * 305.00400 * 17 16 15 20 20 C 1.52997 * 109.47239 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.47077 * 60.00061 * 20 19 17 22 22 C 1.53000 * 109.47036 * 300.00063 * 21 20 19 23 23 C 1.52993 * 109.47509 * 185.00424 * 17 16 15 24 24 C 1.54270 * 106.60098 * 0.02562 * 13 12 11 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09001 * 110.48386 * 322.41687 * 11 9 7 27 27 H 1.08995 * 110.48676 * 85.06559 * 11 9 7 28 28 H 1.08994 * 110.02995 * 264.32159 * 12 11 9 29 29 H 1.09002 * 110.02984 * 142.89540 * 12 11 9 30 30 H 1.00901 * 110.99929 * 211.78741 * 15 13 12 31 31 H 1.09003 * 109.47462 * 300.00087 * 16 15 13 32 32 H 1.08998 * 109.46825 * 60.00077 * 16 15 13 33 33 H 0.96699 * 114.00483 * 300.00388 * 18 17 16 34 34 H 1.09006 * 109.47299 * 299.99937 * 19 17 16 35 35 H 1.08998 * 109.47651 * 59.99472 * 19 17 16 36 36 H 1.08994 * 109.47504 * 300.00005 * 20 19 17 37 37 H 1.09003 * 109.47297 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.47342 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47081 * 60.00173 * 21 20 19 40 40 H 1.09009 * 109.46958 * 300.00176 * 22 21 20 41 41 H 1.08998 * 109.47651 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.46786 * 299.99972 * 23 17 16 43 43 H 1.08997 * 109.47495 * 59.99420 * 23 17 16 44 44 H 1.08993 * 110.48632 * 217.71298 * 24 13 12 45 45 H 1.08998 * 110.60091 * 95.11941 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.5711 -2.5508 -0.8561 11 6 0.4854 -2.6910 1.3269 12 6 0.3028 -4.2186 1.4417 13 6 1.4126 -4.8592 0.5899 14 1 0.9725 -5.4590 -0.2067 15 7 2.2744 -5.6974 1.4342 16 6 1.7448 -7.0639 1.5342 17 6 2.6666 -7.9046 2.4198 18 8 2.6439 -7.3918 3.7533 19 6 4.0945 -7.8422 1.8737 20 6 5.0165 -8.6824 2.7595 21 6 4.5352 -10.1348 2.7638 22 6 3.1073 -10.1972 3.3098 23 6 2.1851 -9.3568 2.4235 24 6 2.2313 -3.6987 -0.0124 25 1 -0.4850 -0.8400 0.0004 26 1 1.0742 -2.3133 2.1628 27 1 -0.4833 -2.1930 1.2854 28 1 -0.6758 -4.5074 1.0585 29 1 0.4037 -4.5295 2.4816 30 1 3.2231 -5.7015 1.0907 31 1 0.7471 -7.0357 1.9725 32 1 1.6924 -7.5069 0.5397 33 1 2.9375 -6.4733 3.8267 34 1 4.1119 -8.2333 0.8564 35 1 4.4376 -6.8076 1.8709 36 1 4.9991 -8.2909 3.7766 37 1 6.0337 -8.6383 2.3702 38 1 5.1918 -10.7333 3.3952 39 1 4.5527 -10.5263 1.7467 40 1 3.0899 -9.8056 4.3270 41 1 2.7645 -11.2319 3.3133 42 1 1.1679 -9.4013 2.8125 43 1 2.2024 -9.7480 1.4063 44 1 2.5365 -3.9358 -1.0315 45 1 3.1029 -3.4831 0.6055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842154342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:56 Heat of formation + Delta-G solvation = -108.378503 kcal Electronic energy + Delta-G solvation = -21294.284818 eV Core-core repulsion = 18308.714588 eV Total energy + Delta-G solvation = -2985.570230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72834 -39.31925 -36.30133 -35.56875 -33.91996 -31.79751 -31.01252 -29.91689 -28.12888 -25.83881 -25.35619 -23.51302 -22.10582 -21.37981 -20.64774 -20.59288 -18.86502 -17.47450 -17.09070 -16.85447 -16.21380 -15.66844 -15.54957 -15.41097 -15.00965 -14.95588 -14.37933 -14.10225 -14.05073 -13.86874 -13.24979 -13.06400 -12.83875 -12.80877 -12.61008 -12.53533 -12.20194 -12.03604 -11.94429 -11.84151 -11.73116 -11.63502 -11.54605 -11.36632 -11.26608 -10.83220 -10.55133 -10.47647 -10.41953 -9.41621 -8.55389 -6.27651 1.53648 1.61568 1.80383 2.59841 3.09339 3.23397 3.39108 3.72099 3.82689 3.88071 3.89465 3.96480 4.16084 4.22096 4.35312 4.38912 4.53124 4.55257 4.60090 4.61747 4.66646 4.73759 4.78916 4.84938 4.94681 4.98127 5.02578 5.06461 5.09586 5.14799 5.19659 5.27034 5.29249 5.31897 5.36578 5.43459 5.49155 5.59742 5.70198 6.10857 6.15622 6.27586 6.44631 6.70087 6.91288 7.52528 8.83287 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039233 B = 0.003644 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.514025 B = 7681.876562 C = 8006.426224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.033 4.033 3 Si 1.111 2.889 4 H -0.286 1.286 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.606 4.606 8 H 0.045 0.955 9 C 0.022 3.978 10 H -0.006 1.006 11 C -0.103 4.103 12 C -0.103 4.103 13 C 0.097 3.903 14 H 0.045 0.955 15 N -0.680 5.680 16 C 0.034 3.966 17 C 0.144 3.856 18 O -0.566 6.566 19 C -0.146 4.146 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.100 4.100 25 H 0.261 0.739 26 H 0.036 0.964 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.344 0.656 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.384 0.616 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.106 -20.720 4.255 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.231 4.231 3 Si 0.934 3.066 4 H -0.212 1.212 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.644 4.644 8 H 0.063 0.937 9 C 0.003 3.997 10 H 0.013 0.987 11 C -0.142 4.142 12 C -0.142 4.142 13 C -0.012 4.012 14 H 0.063 0.937 15 N -0.314 5.314 16 C -0.096 4.096 17 C 0.103 3.897 18 O -0.373 6.373 19 C -0.184 4.184 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.165 0.835 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.409 -19.495 4.962 21.438 hybrid contribution 0.124 -1.031 -1.117 1.525 sum 7.534 -20.526 3.845 22.200 Atomic orbital electron populations 1.70901 1.07845 1.30419 1.48727 1.27186 0.96673 1.06285 0.92986 0.83003 0.74167 0.71674 0.77780 1.21195 1.19742 1.19660 1.22350 0.94099 0.93126 1.54787 0.93680 1.19703 0.93723 0.93809 0.92418 0.98748 1.22291 0.98194 0.94769 0.98946 1.22129 0.97145 0.94587 1.00310 1.21996 0.93512 0.93098 0.92624 0.93745 1.60589 1.05725 1.10327 1.54730 1.22730 0.99394 0.88484 0.98944 1.21138 0.93399 0.93086 0.82057 1.86405 1.90117 1.33309 1.27453 1.22209 0.95195 1.00902 1.00108 1.21417 0.98406 0.95336 0.99872 1.21538 0.96136 0.96334 1.01458 1.21421 0.94984 0.99403 0.99173 1.21541 0.99529 0.92146 1.01238 1.22373 0.98268 0.94296 0.98901 0.92826 0.94488 0.95407 0.92807 0.91144 0.83507 0.91518 0.94022 0.76693 0.90789 0.91439 0.92409 0.91478 0.91447 0.91510 0.92660 0.91132 0.91991 0.89749 0.92974 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 13.49 21.45 0.29 -57.84 16 2 C -0.03 -1.93 5.36 84.65 0.45 -1.47 16 3 Si 1.11 50.78 29.90 68.60 2.05 52.83 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.61 -34.32 8.49 25.60 0.22 -34.11 16 8 H 0.04 2.51 7.77 -2.91 -0.02 2.49 16 9 C 0.02 1.13 2.38 -10.24 -0.02 1.11 16 10 H -0.01 -0.31 7.91 -2.39 -0.02 -0.33 16 11 C -0.10 -4.90 5.69 31.67 0.18 -4.72 16 12 C -0.10 -3.85 6.55 31.32 0.21 -3.64 16 13 C 0.10 3.24 3.25 45.64 0.15 3.39 16 14 H 0.04 1.42 7.81 -2.39 -0.02 1.40 16 15 N -0.68 -18.13 5.68 -487.84 -2.77 -20.90 16 16 C 0.03 0.78 4.76 86.30 0.41 1.19 16 17 C 0.14 2.88 0.79 -10.80 -0.01 2.87 16 18 O -0.57 -13.29 11.63 -148.98 -1.73 -15.02 16 19 C -0.15 -2.57 4.46 30.59 0.14 -2.43 16 20 C -0.11 -1.84 5.78 30.59 0.18 -1.66 16 21 C -0.12 -1.70 5.92 30.60 0.18 -1.52 16 22 C -0.11 -1.83 5.78 30.61 0.18 -1.65 16 23 C -0.11 -1.88 4.95 30.61 0.15 -1.73 16 24 C -0.10 -4.01 5.66 31.68 0.18 -3.83 16 25 H 0.26 16.18 5.56 -92.71 -0.52 15.67 16 26 H 0.04 1.84 8.04 -2.39 -0.02 1.82 16 27 H 0.03 1.41 6.67 -2.39 -0.02 1.39 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 2.50 7.92 -2.39 -0.02 2.48 16 30 H 0.34 8.47 6.20 -89.69 -0.56 7.91 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 0.89 8.07 -2.39 -0.02 0.87 16 33 H 0.38 8.56 8.66 -74.06 -0.64 7.92 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.07 1.25 6.51 -2.39 -0.02 1.23 16 36 H 0.06 1.08 7.68 -2.39 -0.02 1.06 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 1.09 7.68 -2.38 -0.02 1.07 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.06 2.53 7.85 -2.39 -0.02 2.51 16 Total: -1.00 -63.55 337.60 0.43 -63.12 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.01 Total: 26.04 kcal Atomic # 6 Polarization: -50.81 SS G_CDS: 2.58 Total: -48.23 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -2.48 Total: -78.74 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -1.73 Total: -15.02 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.83 kcal Total: -63.55 0.43 -63.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842154342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.262 kcal (2) G-P(sol) polarization free energy of solvation -63.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds