Wall clock time and date at job start Mon Mar 30 2020 06:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.52997 * 109.47085 * 119.99959 * 2 1 3 5 5 C 1.50706 * 109.47238 * 64.99687 * 4 2 1 6 6 N 1.29947 * 126.28986 * 269.69164 * 5 4 2 7 7 O 1.21294 * 110.24841 * 179.84069 * 6 5 4 8 8 C 1.33640 * 109.81682 * 0.42474 * 7 6 5 9 9 C 1.50693 * 126.55463 * 179.71676 * 8 7 6 10 10 H 1.09003 * 109.47360 * 195.02598 * 9 8 7 11 11 N 1.46907 * 109.47156 * 315.02550 * 9 8 7 12 12 C 1.53001 * 109.47277 * 75.02578 * 9 8 7 13 13 C 1.52998 * 109.47329 * 175.00187 * 12 9 8 14 14 C 1.53001 * 109.47329 * 180.02562 * 13 12 9 15 15 C 1.50697 * 109.46903 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00583 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99541 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99741 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47408 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47206 * 120.00680 * 19 17 15 22 22 H 1.48498 * 109.47400 * 240.00406 * 19 17 15 23 23 N 1.31137 * 106.89203 * 359.73932 * 8 7 6 24 24 H 1.08997 * 109.46762 * 300.00620 * 1 2 3 25 25 H 1.09004 * 109.46776 * 59.99702 * 1 2 3 26 26 H 1.08993 * 109.46967 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47110 * 240.00019 * 2 1 3 28 28 H 1.09006 * 109.46634 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47090 * 299.99751 * 3 2 1 30 30 H 1.08993 * 109.47376 * 60.00069 * 3 2 1 31 31 H 1.09001 * 109.46832 * 305.00000 * 4 2 1 32 32 H 1.09000 * 109.47611 * 185.00297 * 4 2 1 33 33 H 1.00902 * 110.99631 * 296.04340 * 11 9 8 34 34 H 1.00896 * 111.00094 * 59.99920 * 11 9 8 35 35 H 1.09003 * 109.46881 * 294.99922 * 12 9 8 36 36 H 1.08997 * 109.46929 * 55.00206 * 12 9 8 37 37 H 1.09009 * 109.46961 * 300.00135 * 13 12 9 38 38 H 1.09001 * 109.47174 * 59.99631 * 13 12 9 39 39 H 1.09000 * 109.46697 * 300.00234 * 14 13 12 40 40 H 1.08997 * 109.46929 * 60.00019 * 14 13 12 41 41 H 0.97002 * 119.99880 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 -2.1733 1.1889 6 7 0.5453 -2.6901 1.6585 7 8 0.5211 -3.8846 1.4490 8 6 1.6371 -4.2560 0.8146 9 6 1.9992 -5.6523 0.3786 10 1 3.0608 -5.6929 0.1343 11 7 1.7109 -6.5956 1.4673 12 6 1.1772 -6.0308 -0.8551 13 6 1.6325 -7.3970 -1.3719 14 6 0.8109 -7.7752 -2.6060 15 6 1.2598 -9.1205 -3.1153 16 1 2.0516 -9.6528 -2.6093 17 6 0.6589 -9.6723 -4.2269 18 7 -0.3056 -9.0244 -4.8428 19 14 1.2148 -11.3403 -4.8578 20 1 2.3069 -11.8574 -3.9945 21 1 0.0710 -12.2870 -4.8287 22 1 1.7083 -11.2030 -6.2517 23 7 2.3570 -3.1733 0.6444 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6054 -0.2617 2.1369 32 1 3.1263 -0.6443 1.2953 33 1 2.2891 -6.4062 2.2723 34 1 0.7324 -6.5767 1.7124 35 1 0.1214 -6.0768 -0.5880 36 1 1.3230 -5.2811 -1.6328 37 1 2.6884 -7.3510 -1.6389 38 1 1.4868 -8.1467 -0.5942 39 1 -0.2450 -7.8209 -2.3393 40 1 0.9571 -7.0254 -3.3835 41 1 -0.7281 -9.4124 -5.6250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846770260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:21 Heat of formation + Delta-G solvation = 28.906509 kcal Electronic energy + Delta-G solvation = -19962.912792 eV Core-core repulsion = 16879.755343 eV Total energy + Delta-G solvation = -3083.157448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.64622 -37.41631 -37.10746 -35.18592 -33.67309 -31.99470 -31.36608 -28.33317 -28.04173 -27.45302 -25.30164 -23.75922 -22.76602 -21.03514 -20.26357 -20.00278 -18.10302 -17.45513 -16.40507 -16.04787 -15.91470 -15.10647 -14.65630 -14.57401 -14.46386 -14.30538 -13.31444 -12.92932 -12.81232 -12.60364 -12.41754 -12.18472 -12.07325 -11.74040 -11.69130 -11.31459 -11.24889 -11.13491 -11.08443 -10.98655 -10.76526 -10.52074 -10.46231 -10.00670 -9.64592 -9.23161 -9.14972 -8.95622 -8.29801 -5.95085 -3.96661 1.06590 2.13303 2.74109 3.34632 3.42056 3.46461 3.48536 3.90255 4.41869 4.49707 4.50986 4.55722 4.67103 4.94812 5.04891 5.17197 5.27798 5.33768 5.37140 5.39928 5.41154 5.55034 5.60008 5.66327 5.81882 5.87525 5.94525 5.98168 6.02397 6.06161 6.38850 6.75637 6.87407 6.98089 7.17925 7.28044 7.74931 7.89475 8.06297 8.09935 8.49237 9.11237 9.67217 11.16430 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027695 B = 0.003214 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.762775 B = 8709.274868 C = 9281.274973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.024 4.024 5 C 0.171 3.829 6 N -0.386 5.386 7 O 0.072 5.928 8 C 0.154 3.846 9 C 0.187 3.813 10 H 0.126 0.874 11 N -0.817 5.817 12 C -0.110 4.110 13 C -0.099 4.099 14 C 0.019 3.981 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.285 1.285 23 N -0.481 5.481 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.344 0.656 34 H 0.351 0.649 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.166 17.391 13.820 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.063 4.063 5 C -0.102 4.102 6 N -0.095 5.095 7 O 0.016 5.984 8 C -0.070 4.070 9 C 0.072 3.928 10 H 0.144 0.856 11 N -0.346 5.346 12 C -0.149 4.149 13 C -0.137 4.137 14 C -0.018 4.018 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.215 5.215 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.025 17.500 13.465 22.445 hybrid contribution -0.129 -0.143 0.041 0.197 sum 3.896 17.357 13.506 22.335 Atomic orbital electron populations 1.21879 0.94667 1.02176 1.01938 1.21101 0.96449 0.96370 0.97347 1.21805 1.01172 0.94986 1.02197 1.20089 1.02448 0.83728 0.99999 1.25847 0.88268 0.99416 0.96703 1.74614 1.21717 0.90912 1.22250 1.85254 1.38567 1.18373 1.56247 1.30972 0.82349 1.01033 0.92599 1.20691 1.02993 0.75471 0.93637 0.85632 1.58872 1.11783 1.51649 1.12297 1.21826 0.98937 1.00760 0.93344 1.21542 0.99776 0.92751 0.99638 1.19123 0.95038 0.96169 0.91485 1.21311 1.18982 1.03633 1.11501 0.92536 1.25035 0.95130 0.97598 0.96852 1.69977 1.24924 1.38263 1.20529 0.86560 0.78580 0.84325 0.78684 1.19693 1.21091 1.21119 1.71910 1.30141 0.97802 1.21661 0.92440 0.92308 0.92766 0.90432 0.92294 0.92115 0.92457 0.89266 0.88692 0.84327 0.83460 0.91556 0.91439 0.93366 0.91611 0.96695 0.96888 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.01 37.16 0.33 -1.11 16 2 C -0.09 -0.84 2.91 -90.62 -0.26 -1.11 16 3 C -0.14 -0.97 9.19 37.16 0.34 -0.63 16 4 C -0.02 -0.23 5.32 -27.88 -0.15 -0.38 16 5 C 0.17 2.22 6.68 -156.37 -1.04 1.18 16 6 N -0.39 -5.40 11.48 30.89 0.35 -5.05 16 7 O 0.07 1.00 11.29 18.11 0.20 1.20 16 8 C 0.15 2.06 7.31 -13.06 -0.10 1.97 16 9 C 0.19 2.40 3.29 -68.86 -0.23 2.17 16 10 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 11 N -0.82 -9.12 8.68 -5.65 -0.05 -9.16 16 12 C -0.11 -1.75 4.84 -26.73 -0.13 -1.88 16 13 C -0.10 -1.96 5.04 -26.73 -0.13 -2.09 16 14 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 15 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 N -0.48 -6.81 11.55 -9.87 -0.11 -6.92 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.65 6.85 -51.93 -0.36 0.29 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.34 3.10 9.06 -39.29 -0.36 2.75 16 34 H 0.35 3.68 8.98 -39.29 -0.35 3.33 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 38 H 0.07 1.30 7.75 -51.93 -0.40 0.89 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -31.55 342.95 -7.56 -39.11 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.93 Total: 0.34 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.92 Total: -15.00 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.93 Total: -47.58 kcal Atomic # 8 Polarization: 1.00 SS G_CDS: 0.20 Total: 1.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.55 -7.56 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846770260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.018 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds