Wall clock time and date at job start Mon Mar 30 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.52997 * 109.47085 * 119.99959 * 2 1 3 5 5 C 1.50706 * 109.47238 * 64.99687 * 4 2 1 6 6 N 1.29947 * 126.28986 * 269.69164 * 5 4 2 7 7 O 1.21294 * 110.24841 * 179.84069 * 6 5 4 8 8 C 1.33640 * 109.81682 * 0.42474 * 7 6 5 9 9 C 1.50693 * 126.55463 * 179.71676 * 8 7 6 10 10 H 1.09003 * 109.47360 * 195.02598 * 9 8 7 11 11 N 1.46907 * 109.47156 * 315.02550 * 9 8 7 12 12 C 1.53001 * 109.47277 * 75.02578 * 9 8 7 13 13 C 1.52998 * 109.47329 * 175.00187 * 12 9 8 14 14 C 1.53001 * 109.47329 * 180.02562 * 13 12 9 15 15 C 1.50697 * 109.46903 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00583 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99541 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99741 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47408 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47206 * 120.00680 * 19 17 15 22 22 H 1.48498 * 109.47400 * 240.00406 * 19 17 15 23 23 N 1.31137 * 106.89203 * 359.73932 * 8 7 6 24 24 H 1.08997 * 109.46762 * 300.00620 * 1 2 3 25 25 H 1.09004 * 109.46776 * 59.99702 * 1 2 3 26 26 H 1.08993 * 109.46967 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47110 * 240.00019 * 2 1 3 28 28 H 1.09006 * 109.46634 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47090 * 299.99751 * 3 2 1 30 30 H 1.08993 * 109.47376 * 60.00069 * 3 2 1 31 31 H 1.09001 * 109.46832 * 305.00000 * 4 2 1 32 32 H 1.09000 * 109.47611 * 185.00297 * 4 2 1 33 33 H 1.00902 * 110.99631 * 296.04340 * 11 9 8 34 34 H 1.00896 * 111.00094 * 59.99920 * 11 9 8 35 35 H 1.09003 * 109.46881 * 294.99922 * 12 9 8 36 36 H 1.08997 * 109.46929 * 55.00206 * 12 9 8 37 37 H 1.09009 * 109.46961 * 300.00135 * 13 12 9 38 38 H 1.09001 * 109.47174 * 59.99631 * 13 12 9 39 39 H 1.09000 * 109.46697 * 300.00234 * 14 13 12 40 40 H 1.08997 * 109.46929 * 60.00019 * 14 13 12 41 41 H 0.97002 * 119.99880 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 -2.1733 1.1889 6 7 0.5453 -2.6901 1.6585 7 8 0.5211 -3.8846 1.4490 8 6 1.6371 -4.2560 0.8146 9 6 1.9992 -5.6523 0.3786 10 1 3.0608 -5.6929 0.1343 11 7 1.7109 -6.5956 1.4673 12 6 1.1772 -6.0308 -0.8551 13 6 1.6325 -7.3970 -1.3719 14 6 0.8109 -7.7752 -2.6060 15 6 1.2598 -9.1205 -3.1153 16 1 2.0516 -9.6528 -2.6093 17 6 0.6589 -9.6723 -4.2269 18 7 -0.3056 -9.0244 -4.8428 19 14 1.2148 -11.3403 -4.8578 20 1 2.3069 -11.8574 -3.9945 21 1 0.0710 -12.2870 -4.8287 22 1 1.7083 -11.2030 -6.2517 23 7 2.3570 -3.1733 0.6444 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6054 -0.2617 2.1369 32 1 3.1263 -0.6443 1.2953 33 1 2.2891 -6.4062 2.2723 34 1 0.7324 -6.5767 1.7124 35 1 0.1214 -6.0768 -0.5880 36 1 1.3230 -5.2811 -1.6328 37 1 2.6884 -7.3510 -1.6389 38 1 1.4868 -8.1467 -0.5942 39 1 -0.2450 -7.8209 -2.3393 40 1 0.9571 -7.0254 -3.3835 41 1 -0.7281 -9.4124 -5.6250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846770260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:20 Heat of formation + Delta-G solvation = 7.059663 kcal Electronic energy + Delta-G solvation = -19963.860142 eV Core-core repulsion = 16879.755343 eV Total energy + Delta-G solvation = -3084.104799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.69138 -38.32740 -38.21750 -36.19100 -35.51237 -33.54834 -32.64320 -29.64497 -29.14373 -28.11674 -26.85736 -24.96542 -24.20800 -22.18306 -21.66674 -21.01928 -19.17177 -18.53808 -18.35268 -17.30073 -16.88494 -16.45945 -16.00812 -15.73397 -15.43238 -15.20019 -14.78167 -14.39289 -13.82406 -13.69612 -13.55793 -13.29602 -13.18689 -12.98945 -12.91021 -12.80314 -12.51539 -12.35456 -12.24135 -12.09062 -12.03961 -11.94926 -11.72673 -11.40145 -11.29864 -11.17097 -10.80279 -10.51434 -10.07838 -8.15826 -6.25921 0.01125 1.11075 1.42860 1.43110 1.56738 1.69171 2.44511 2.53565 2.95352 3.17723 3.47293 3.70288 3.81030 3.88135 3.90715 4.07611 4.17989 4.40444 4.54750 4.58772 4.60524 4.68596 4.73213 4.79427 4.84672 4.90474 4.91559 5.00420 5.14028 5.16407 5.27354 5.29003 5.36329 5.37082 5.62787 5.85271 5.92917 5.95943 6.31625 6.42556 6.92544 7.05905 7.43244 8.96330 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027695 B = 0.003214 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.762775 B = 8709.274868 C = 9281.274973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.025 4.025 5 C 0.170 3.830 6 N -0.401 5.401 7 O 0.066 5.934 8 C 0.157 3.843 9 C 0.202 3.798 10 H 0.135 0.865 11 N -0.817 5.817 12 C -0.102 4.102 13 C -0.083 4.083 14 C 0.020 3.980 15 C -0.537 4.537 16 H 0.062 0.938 17 C -0.004 4.004 18 N -0.937 5.937 19 Si 0.964 3.036 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.280 1.280 23 N -0.497 5.497 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.359 0.641 34 H 0.356 0.644 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.069 0.931 39 H -0.010 1.010 40 H -0.014 1.014 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 17.619 14.847 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.196 4.196 4 C -0.063 4.063 5 C -0.103 4.103 6 N -0.111 5.111 7 O 0.011 5.989 8 C -0.067 4.067 9 C 0.087 3.913 10 H 0.152 0.848 11 N -0.348 5.348 12 C -0.140 4.140 13 C -0.120 4.120 14 C -0.017 4.017 15 C -0.575 4.575 16 H 0.081 0.919 17 C -0.201 4.201 18 N -0.577 5.577 19 Si 0.788 3.212 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.206 1.206 23 N -0.231 5.231 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.008 0.992 40 H 0.005 0.995 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.303 17.720 14.518 23.514 hybrid contribution -0.560 -0.178 -0.283 0.653 sum 4.743 17.542 14.235 23.083 Atomic orbital electron populations 1.21870 0.95307 1.00538 1.02781 1.21075 0.95847 0.97730 0.96321 1.21768 1.01697 0.93155 1.02970 1.20314 1.03454 0.81751 1.00799 1.26473 0.87656 1.00594 0.95589 1.74611 1.22342 0.90986 1.23191 1.85235 1.38685 1.18511 1.56482 1.31006 0.82215 1.01044 0.92432 1.20403 1.02558 0.75515 0.92815 0.84772 1.58850 1.12564 1.50727 1.12703 1.21605 0.99354 0.98405 0.94679 1.21272 0.98884 0.94831 0.97055 1.19062 0.94544 0.94801 0.93280 1.21776 1.19113 1.04751 1.11848 0.91937 1.25998 0.95128 1.01849 0.97168 1.70112 1.26211 1.40292 1.21126 0.85417 0.78454 0.79146 0.78148 1.18354 1.20524 1.20580 1.71922 1.30801 0.98287 1.22130 0.91379 0.91717 0.95544 0.92267 0.91436 0.91809 0.91234 0.87742 0.87294 0.82610 0.82925 0.91786 0.92307 0.92852 0.91229 0.99197 0.99543 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.01 71.98 0.65 -2.11 16 2 C -0.09 -1.52 2.91 -10.79 -0.03 -1.55 16 3 C -0.14 -1.57 9.19 71.98 0.66 -0.91 16 4 C -0.02 -0.43 5.32 29.85 0.16 -0.27 16 5 C 0.17 4.28 6.68 138.47 0.92 5.21 16 6 N -0.40 -11.02 11.48 -60.35 -0.69 -11.71 16 7 O 0.07 1.78 11.29 74.87 0.85 2.63 16 8 C 0.16 4.08 7.31 88.38 0.65 4.73 16 9 C 0.20 4.96 3.29 44.17 0.15 5.10 16 10 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 11 N -0.82 -16.93 8.68 -171.79 -1.49 -18.42 16 12 C -0.10 -3.23 4.84 30.59 0.15 -3.08 16 13 C -0.08 -3.25 5.04 30.59 0.15 -3.09 16 14 C 0.02 1.06 4.97 29.85 0.15 1.21 16 15 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 16 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 19 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 N -0.50 -13.66 11.55 -303.23 -3.50 -17.16 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.03 0.63 6.85 -2.39 -0.02 0.61 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.36 5.74 9.06 -89.69 -0.81 4.93 16 34 H 0.36 6.98 8.98 -89.70 -0.81 6.18 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.07 2.68 7.75 -2.39 -0.02 2.66 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -68.04 342.95 1.17 -66.87 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -0.60 Total: 13.64 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 4.30 Total: -24.99 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -5.40 Total: -104.78 kcal Atomic # 8 Polarization: 1.78 SS G_CDS: 0.85 Total: 2.63 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.04 1.17 -66.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846770260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.929 kcal (2) G-P(sol) polarization free energy of solvation -68.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds