Wall clock time and date at job start Mon Mar 30 2020 07:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48499 * 109.46736 * 269.99728 * 3 2 1 5 5 H 1.48500 * 109.47201 * 30.00178 * 3 2 1 6 6 H 1.48504 * 109.47025 * 149.99843 * 3 2 1 7 7 C 1.37876 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47501 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47180 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99708 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99934 * 179.97438 * 12 11 10 15 15 C 1.48525 * 118.47149 * 179.97438 * 14 12 11 16 16 C 1.55900 * 104.96881 * 124.12108 * 15 14 12 17 17 C 1.53571 * 107.13364 * 128.74627 * 16 15 14 18 18 C 1.54746 * 116.17835 * 300.14625 * 17 16 15 19 19 C 1.57417 * 105.28485 * 302.38028 * 18 17 16 20 20 C 1.54693 * 105.14344 * 130.65111 * 19 18 17 21 21 C 1.53567 * 116.31726 * 302.67212 * 20 19 18 22 22 C 1.48520 * 118.47286 * 0.02562 * 14 12 11 23 23 H 0.97004 * 119.99919 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46410 * 60.00765 * 9 7 2 25 25 H 1.09000 * 109.47581 * 300.00954 * 9 7 2 26 26 H 1.09001 * 109.46726 * 60.00380 * 10 9 7 27 27 H 1.09000 * 109.47364 * 300.00942 * 10 9 7 28 28 H 1.08997 * 109.46844 * 59.99961 * 11 10 9 29 29 H 1.09004 * 109.46924 * 300.00669 * 11 10 9 30 30 H 1.08996 * 110.33381 * 5.26070 * 15 14 12 31 31 H 1.08995 * 110.46739 * 243.04789 * 15 14 12 32 32 H 1.08997 * 109.92771 * 9.33457 * 16 15 14 33 33 H 1.09004 * 109.98887 * 248.18489 * 16 15 14 34 34 H 1.09000 * 108.14020 * 178.40418 * 17 16 15 35 35 H 1.09001 * 107.97730 * 61.76580 * 17 16 15 36 36 H 1.09002 * 110.29903 * 61.36529 * 18 17 16 37 37 H 1.08999 * 110.29925 * 183.40057 * 18 17 16 38 38 H 1.08997 * 110.30171 * 249.80095 * 19 18 17 39 39 H 1.09006 * 110.29998 * 11.99873 * 19 18 17 40 40 H 1.08997 * 108.14303 * 180.83508 * 20 19 18 41 41 H 1.08999 * 107.84057 * 64.27315 * 20 19 18 42 42 H 1.08999 * 109.92909 * 180.66546 * 21 20 19 43 43 H 1.09000 * 109.92789 * 59.46377 * 21 20 19 44 44 H 1.09000 * 110.33540 * 242.99200 * 22 14 12 45 45 H 1.09005 * 110.33276 * 5.11345 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6367 0.0001 12 6 6.0537 -4.0576 -0.0004 13 8 5.2655 -4.9793 -0.0012 14 7 7.3787 -4.3039 -0.0010 15 6 7.8363 -5.7169 -0.0009 16 6 8.7635 -5.8400 -1.2481 17 6 10.0811 -6.4689 -0.7720 18 6 10.8598 -5.6845 0.3111 19 6 11.1263 -4.2652 -0.3155 20 6 10.6791 -3.2550 0.7673 21 6 9.2242 -3.3689 1.2453 22 6 8.3135 -3.1497 -0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 3.8750 -0.6798 0.8896 25 1 3.8745 -0.6808 -0.8904 26 1 3.6577 -3.1506 -0.8897 27 1 3.6583 -3.1504 0.8902 28 1 5.9147 -2.1229 0.8901 29 1 5.9148 -2.1229 -0.8899 30 1 6.9846 -6.3908 -0.0940 31 1 8.3944 -5.9368 0.9092 32 1 8.9537 -4.8526 -1.6685 33 1 8.2966 -6.4790 -1.9978 34 1 10.7322 -6.5890 -1.6378 35 1 9.8577 -7.4604 -0.3782 36 1 10.2591 -5.5917 1.2160 37 1 11.8033 -6.1827 0.5339 38 1 12.1864 -4.1428 -0.5373 39 1 10.5315 -4.1331 -1.2193 40 1 10.8297 -2.2490 0.3758 41 1 11.3311 -3.3813 1.6316 42 1 9.0184 -2.6048 1.9948 43 1 9.0475 -4.3593 1.6650 44 1 8.9123 -3.1469 -0.9113 45 1 7.7607 -2.2147 0.0914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847073281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:49 Heat of formation + Delta-G solvation = -53.736602 kcal Electronic energy + Delta-G solvation = -21059.052090 eV Core-core repulsion = 18075.851311 eV Total energy + Delta-G solvation = -2983.200779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99254 -37.82814 -34.60570 -34.42678 -33.85780 -32.03548 -29.51326 -28.42420 -27.43002 -24.75539 -24.44165 -23.03878 -20.56984 -20.13658 -19.81783 -18.78080 -17.02961 -16.80279 -16.42511 -15.68166 -15.37808 -14.74691 -14.30670 -14.16926 -13.98388 -13.85541 -13.14212 -12.94756 -12.81823 -12.64597 -12.61953 -12.31021 -11.98833 -11.65922 -11.62639 -11.43289 -11.20784 -10.98816 -10.84390 -10.82996 -10.75419 -10.66547 -10.32002 -9.93615 -9.75268 -9.65265 -9.29807 -9.08720 -8.55025 -8.48604 -5.98289 -3.95784 2.93672 3.00398 3.33114 3.40036 3.43098 4.35773 4.49073 4.49202 4.49727 4.71761 4.75179 4.79007 4.82478 4.92355 5.07119 5.08456 5.29565 5.35073 5.39752 5.44938 5.50623 5.51901 5.60152 5.61683 5.64669 5.66540 5.75535 5.86033 5.93439 5.94918 5.99732 6.08095 6.13642 6.18425 6.56292 6.60958 6.75009 6.96494 7.40053 7.47689 7.49731 7.85599 8.45340 8.62363 9.08783 9.63889 11.15522 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.003708 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.038004 B = 7548.900870 C = 8174.162881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.087 4.087 11 C -0.142 4.142 12 C 0.507 3.493 13 O -0.540 6.540 14 N -0.630 5.630 15 C 0.112 3.888 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.124 4.124 21 C -0.137 4.137 22 C 0.105 3.895 23 H 0.262 0.738 24 H 0.014 0.986 25 H 0.010 0.990 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.963 -8.652 0.039 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.125 4.125 11 C -0.182 4.182 12 C 0.296 3.704 13 O -0.416 6.416 14 N -0.366 5.366 15 C -0.009 4.009 16 C -0.173 4.173 17 C -0.161 4.161 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.162 4.162 21 C -0.175 4.175 22 C -0.017 4.017 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 26.407 -9.039 0.041 27.911 hybrid contribution 0.501 0.994 -0.025 1.114 sum 26.908 -8.045 0.016 28.085 Atomic orbital electron populations 1.69926 1.06312 1.26758 1.51454 1.25055 0.94739 0.99143 0.94740 0.86759 0.80324 0.83656 0.78401 1.20354 1.21458 1.19049 1.21177 0.89575 0.94532 1.50299 0.90950 1.19605 0.97283 0.92250 0.96007 1.21263 0.89394 0.99406 1.02451 1.21908 1.00554 0.92485 1.03242 1.21262 0.81853 0.92487 0.74824 1.90663 1.55030 1.46726 1.49221 1.49395 1.06039 1.06336 1.74816 1.22607 0.98477 0.82377 0.97428 1.22680 0.94975 1.01884 0.97771 1.21971 0.96195 0.99276 0.98677 1.22858 0.99578 0.95588 0.98168 1.22851 1.00611 0.94557 0.98186 1.21959 0.96099 0.99362 0.98751 1.22700 0.94163 1.03037 0.97611 1.22863 0.91624 0.88914 0.98256 0.92818 0.96723 0.97167 0.92186 0.92167 0.89546 0.89623 0.88706 0.91105 0.90631 0.91189 0.92673 0.92775 0.91011 0.91736 0.91642 0.91025 0.92617 0.92659 0.90873 0.90442 0.90673 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.66 13.96 55.43 0.77 -27.89 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -15.33 9.66 -34.44 -0.33 -15.67 16 8 H 0.07 2.33 7.99 -52.48 -0.42 1.91 16 9 C -0.01 -0.34 4.04 -27.89 -0.11 -0.46 16 10 C -0.09 -1.86 4.44 -26.73 -0.12 -1.98 16 11 C -0.14 -2.29 3.97 -27.88 -0.11 -2.40 16 12 C 0.51 8.21 7.64 -10.99 -0.08 8.12 16 13 O -0.54 -10.93 15.22 5.56 0.08 -10.85 16 14 N -0.63 -7.56 2.61 -166.81 -0.44 -7.99 16 15 C 0.11 1.20 5.86 -1.38 -0.01 1.19 16 16 C -0.14 -1.16 5.79 -24.89 -0.14 -1.31 16 17 C -0.12 -0.85 4.87 -25.52 -0.12 -0.98 16 18 C -0.12 -0.79 5.86 -23.41 -0.14 -0.93 16 19 C -0.12 -0.77 5.89 -23.43 -0.14 -0.91 16 20 C -0.12 -0.80 4.85 -25.55 -0.12 -0.92 16 21 C -0.14 -1.06 5.79 -24.91 -0.14 -1.21 16 22 C 0.11 0.95 5.75 -1.40 -0.01 0.95 16 23 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 24 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 25 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 26 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 27 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 28 H 0.09 1.24 7.64 -51.93 -0.40 0.84 16 29 H 0.09 1.22 7.83 -51.93 -0.41 0.82 16 30 H 0.09 1.23 6.89 -51.93 -0.36 0.87 16 31 H 0.07 0.67 4.98 -51.93 -0.26 0.41 16 32 H 0.08 0.66 4.45 -51.93 -0.23 0.43 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.50 4.59 -51.93 -0.24 0.26 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.48 4.61 -51.93 -0.24 0.24 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.66 4.44 -51.93 -0.23 0.43 16 44 H 0.08 0.60 4.97 -51.93 -0.26 0.34 16 45 H 0.09 0.85 5.70 -51.93 -0.30 0.55 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -33.55 328.43 -8.47 -42.02 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.49 Total: -2.82 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.68 Total: -14.68 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.34 Total: -35.88 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.55 -8.47 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847073281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.713 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds