Wall clock time and date at job start Mon Mar 30 2020 07:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48499 * 109.46736 * 269.99728 * 3 2 1 5 5 H 1.48500 * 109.47201 * 30.00178 * 3 2 1 6 6 H 1.48504 * 109.47025 * 149.99843 * 3 2 1 7 7 C 1.37876 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47501 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47180 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99708 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99934 * 179.97438 * 12 11 10 15 15 C 1.48525 * 118.47149 * 179.97438 * 14 12 11 16 16 C 1.55900 * 104.96881 * 124.12108 * 15 14 12 17 17 C 1.53571 * 107.13364 * 128.74627 * 16 15 14 18 18 C 1.54746 * 116.17835 * 300.14625 * 17 16 15 19 19 C 1.57417 * 105.28485 * 302.38028 * 18 17 16 20 20 C 1.54693 * 105.14344 * 130.65111 * 19 18 17 21 21 C 1.53567 * 116.31726 * 302.67212 * 20 19 18 22 22 C 1.48520 * 118.47286 * 0.02562 * 14 12 11 23 23 H 0.97004 * 119.99919 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46410 * 60.00765 * 9 7 2 25 25 H 1.09000 * 109.47581 * 300.00954 * 9 7 2 26 26 H 1.09001 * 109.46726 * 60.00380 * 10 9 7 27 27 H 1.09000 * 109.47364 * 300.00942 * 10 9 7 28 28 H 1.08997 * 109.46844 * 59.99961 * 11 10 9 29 29 H 1.09004 * 109.46924 * 300.00669 * 11 10 9 30 30 H 1.08996 * 110.33381 * 5.26070 * 15 14 12 31 31 H 1.08995 * 110.46739 * 243.04789 * 15 14 12 32 32 H 1.08997 * 109.92771 * 9.33457 * 16 15 14 33 33 H 1.09004 * 109.98887 * 248.18489 * 16 15 14 34 34 H 1.09000 * 108.14020 * 178.40418 * 17 16 15 35 35 H 1.09001 * 107.97730 * 61.76580 * 17 16 15 36 36 H 1.09002 * 110.29903 * 61.36529 * 18 17 16 37 37 H 1.08999 * 110.29925 * 183.40057 * 18 17 16 38 38 H 1.08997 * 110.30171 * 249.80095 * 19 18 17 39 39 H 1.09006 * 110.29998 * 11.99873 * 19 18 17 40 40 H 1.08997 * 108.14303 * 180.83508 * 20 19 18 41 41 H 1.08999 * 107.84057 * 64.27315 * 20 19 18 42 42 H 1.08999 * 109.92909 * 180.66546 * 21 20 19 43 43 H 1.09000 * 109.92789 * 59.46377 * 21 20 19 44 44 H 1.09000 * 110.33540 * 242.99200 * 22 14 12 45 45 H 1.09005 * 110.33276 * 5.11345 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6367 0.0001 12 6 6.0537 -4.0576 -0.0004 13 8 5.2655 -4.9793 -0.0012 14 7 7.3787 -4.3039 -0.0010 15 6 7.8363 -5.7169 -0.0009 16 6 8.7635 -5.8400 -1.2481 17 6 10.0811 -6.4689 -0.7720 18 6 10.8598 -5.6845 0.3111 19 6 11.1263 -4.2652 -0.3155 20 6 10.6791 -3.2550 0.7673 21 6 9.2242 -3.3689 1.2453 22 6 8.3135 -3.1497 -0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 3.8750 -0.6798 0.8896 25 1 3.8745 -0.6808 -0.8904 26 1 3.6577 -3.1506 -0.8897 27 1 3.6583 -3.1504 0.8902 28 1 5.9147 -2.1229 0.8901 29 1 5.9148 -2.1229 -0.8899 30 1 6.9846 -6.3908 -0.0940 31 1 8.3944 -5.9368 0.9092 32 1 8.9537 -4.8526 -1.6685 33 1 8.2966 -6.4790 -1.9978 34 1 10.7322 -6.5890 -1.6378 35 1 9.8577 -7.4604 -0.3782 36 1 10.2591 -5.5917 1.2160 37 1 11.8033 -6.1827 0.5339 38 1 12.1864 -4.1428 -0.5373 39 1 10.5315 -4.1331 -1.2193 40 1 10.8297 -2.2490 0.3758 41 1 11.3311 -3.3813 1.6316 42 1 9.0184 -2.6048 1.9948 43 1 9.0475 -4.3593 1.6650 44 1 8.9123 -3.1469 -0.9113 45 1 7.7607 -2.2147 0.0914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847073281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:48 Heat of formation + Delta-G solvation = -73.858418 kcal Electronic energy + Delta-G solvation = -21059.924637 eV Core-core repulsion = 18075.851311 eV Total energy + Delta-G solvation = -2984.073326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.08561 -38.70243 -36.18222 -35.49051 -34.67030 -34.04875 -30.77052 -29.54480 -28.35406 -25.97825 -25.19816 -24.36170 -22.01924 -21.21088 -20.39564 -19.90775 -18.84397 -18.09039 -17.50846 -16.69690 -16.41070 -16.22025 -15.53925 -15.23105 -14.97291 -14.72138 -14.70047 -13.99267 -13.93958 -13.83414 -13.69555 -13.28522 -13.19052 -12.95603 -12.67260 -12.48840 -12.34470 -12.14174 -11.84329 -11.77457 -11.65559 -11.62369 -11.50023 -11.33976 -11.30969 -11.25374 -10.86381 -10.74743 -10.60007 -9.53937 -8.27424 -6.33269 1.38740 1.42693 1.54812 1.69828 2.02004 2.39731 3.07597 3.58044 3.82632 3.92835 3.95923 4.06643 4.11733 4.14175 4.20082 4.23454 4.32322 4.38818 4.45246 4.62220 4.66716 4.78228 4.85520 4.90570 4.91059 4.94383 4.96505 5.03409 5.04461 5.07533 5.20409 5.25919 5.31345 5.37733 5.43732 5.52247 5.54539 5.60001 5.62768 5.67779 5.69774 6.30487 6.39560 6.75364 7.25532 7.31211 8.90439 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.003708 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.038004 B = 7548.900870 C = 8174.162881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.004 4.004 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.018 0.982 9 C -0.008 4.008 10 C -0.080 4.080 11 C -0.131 4.131 12 C 0.501 3.499 13 O -0.595 6.595 14 N -0.616 5.616 15 C 0.110 3.890 16 C -0.127 4.127 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.133 4.133 22 C 0.098 3.902 23 H 0.266 0.734 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.076 -6.596 -0.002 31.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.036 0.964 9 C -0.045 4.045 10 C -0.118 4.118 11 C -0.171 4.171 12 C 0.290 3.710 13 O -0.476 6.476 14 N -0.350 5.350 15 C -0.011 4.011 16 C -0.165 4.165 17 C -0.157 4.157 18 C -0.160 4.160 19 C -0.160 4.160 20 C -0.158 4.158 21 C -0.171 4.171 22 C -0.023 4.023 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 30.590 -6.994 0.000 31.380 hybrid contribution -0.827 0.241 -0.009 0.862 sum 29.763 -6.753 -0.009 30.519 Atomic orbital electron populations 1.70112 1.08734 1.28313 1.52704 1.26218 0.95759 1.04188 0.93802 0.85481 0.79684 0.76928 0.79446 1.18819 1.21164 1.15774 1.21564 0.92741 0.92823 1.50761 0.96399 1.19535 0.93442 0.94217 0.97293 1.21038 0.93586 0.97134 1.00026 1.21768 0.96206 0.93202 1.05883 1.21321 0.82986 0.91938 0.74739 1.90652 1.56754 1.48029 1.52187 1.49485 1.05027 1.07853 1.72606 1.22698 0.97909 0.81157 0.99361 1.22607 0.95277 1.02170 0.96474 1.21923 0.95331 0.99138 0.99290 1.22858 0.99742 0.95857 0.97586 1.22854 1.01174 0.94140 0.97870 1.21910 0.95028 0.99831 0.99014 1.22661 0.94773 1.02723 0.96981 1.23203 0.91402 0.87817 0.99848 0.92483 0.95095 0.95238 0.94776 0.94785 0.86814 0.86813 0.91588 0.89543 0.90207 0.91858 0.91823 0.92865 0.91571 0.90824 0.90697 0.91332 0.91863 0.92231 0.90364 0.91305 0.88966 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.47 13.96 21.45 0.30 -62.17 16 2 C 0.00 -0.24 5.47 84.65 0.46 0.23 16 3 Si 0.96 44.14 27.47 68.60 1.88 46.02 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.23 -9.55 6.54 99.48 0.65 -8.90 16 7 C -0.54 -33.05 9.66 25.60 0.25 -32.80 16 8 H 0.02 1.23 7.99 -2.91 -0.02 1.20 16 9 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 10 C -0.08 -3.44 4.44 30.59 0.14 -3.31 16 11 C -0.13 -3.97 3.97 29.85 0.12 -3.85 16 12 C 0.50 16.01 7.64 87.66 0.67 16.68 16 13 O -0.60 -25.12 15.22 -3.03 -0.05 -25.17 16 14 N -0.62 -13.86 2.61 -800.05 -2.09 -15.95 16 15 C 0.11 2.28 5.86 86.99 0.51 2.79 16 16 C -0.13 -2.01 5.79 31.79 0.18 -1.82 16 17 C -0.12 -1.39 4.87 31.38 0.15 -1.24 16 18 C -0.12 -1.23 5.86 32.75 0.19 -1.04 16 19 C -0.12 -1.11 5.89 32.73 0.19 -0.92 16 20 C -0.12 -1.12 4.85 31.36 0.15 -0.96 16 21 C -0.13 -1.65 5.79 31.78 0.18 -1.47 16 22 C 0.10 1.45 5.75 86.98 0.50 1.95 16 23 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 24 H 0.03 1.38 7.20 -2.38 -0.02 1.36 16 25 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 26 H 0.03 1.61 8.10 -2.39 -0.02 1.59 16 27 H 0.03 1.60 8.10 -2.39 -0.02 1.58 16 28 H 0.11 2.84 7.64 -2.39 -0.02 2.83 16 29 H 0.11 2.83 7.83 -2.39 -0.02 2.81 16 30 H 0.07 1.79 6.89 -2.39 -0.02 1.77 16 31 H 0.09 1.53 4.98 -2.39 -0.01 1.52 16 32 H 0.08 1.20 4.45 -2.39 -0.01 1.19 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.75 4.59 -2.39 -0.01 0.74 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 0.67 4.61 -2.38 -0.01 0.66 16 40 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 41 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 1.00 4.44 -2.39 -0.01 0.99 16 44 H 0.09 1.11 4.97 -2.39 -0.01 1.10 16 45 H 0.10 1.39 5.70 -2.38 -0.01 1.38 16 Total: -1.00 -77.19 328.43 4.78 -72.41 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.91 Total: 10.87 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 3.82 Total: -26.00 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -1.79 Total: -78.13 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.17 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -77.19 4.78 -72.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847073281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.453 kcal (2) G-P(sol) polarization free energy of solvation -77.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds