Wall clock time and date at job start Mon Mar 30 2020 06:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50701 * 109.46957 * 2 1 4 4 O 1.20761 * 120.00105 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99709 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.99957 * 43.90235 * 5 3 2 7 7 C 1.54337 * 109.99101 * 282.86620 * 5 3 2 8 8 C 1.55159 * 103.01770 * 218.66623 * 7 5 3 9 9 C 1.54911 * 101.58402 * 35.30769 * 8 7 5 10 10 N 1.47026 * 109.88256 * 164.99993 * 5 3 2 11 11 C 1.34777 * 125.64403 * 298.39633 * 10 5 3 12 12 O 1.21282 * 120.00346 * 359.70988 * 11 10 5 13 13 C 1.50699 * 119.99614 * 179.71588 * 11 10 5 14 14 C 1.53006 * 109.47240 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46997 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47487 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47233 * 120.00158 * 20 18 16 23 23 H 1.48508 * 109.46883 * 239.99963 * 20 18 16 24 24 H 1.08997 * 109.46700 * 59.99817 * 1 2 3 25 25 H 1.09000 * 109.46741 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46692 * 299.99991 * 1 2 3 27 27 H 1.09000 * 109.46692 * 240.00009 * 2 1 3 28 28 H 1.08995 * 109.46916 * 119.99685 * 2 1 3 29 29 H 1.09000 * 110.84795 * 100.20044 * 7 5 3 30 30 H 1.09004 * 110.66567 * 337.04559 * 7 5 3 31 31 H 1.08997 * 111.00491 * 277.22969 * 8 7 5 32 32 H 1.09002 * 110.99984 * 153.37945 * 8 7 5 33 33 H 1.08993 * 110.36852 * 204.15148 * 9 8 7 34 34 H 1.08998 * 110.36731 * 81.82453 * 9 8 7 35 35 H 1.09000 * 109.47247 * 59.99885 * 13 11 10 36 36 H 1.08996 * 109.47258 * 300.00046 * 13 11 10 37 37 H 1.09000 * 109.46866 * 59.99931 * 14 13 11 38 38 H 1.09001 * 109.46611 * 300.00048 * 14 13 11 39 39 H 1.09000 * 109.47486 * 60.00167 * 15 14 13 40 40 H 1.09001 * 109.47362 * 299.99445 * 15 14 13 41 41 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5140 1.6962 -0.0006 6 1 4.0151 1.0388 -0.7112 7 6 4.0924 1.4748 1.4131 8 6 5.1292 2.6210 1.5500 9 6 4.4315 3.7659 0.7738 10 7 3.7615 3.1006 -0.3583 11 6 3.4260 3.6846 -1.5258 12 8 2.8747 3.0378 -2.3910 13 6 3.7359 5.1413 -1.7560 14 6 3.2555 5.5509 -3.1497 15 6 3.5708 7.0296 -3.3837 16 6 3.0970 7.4331 -4.7562 17 1 2.6229 6.7064 -5.3991 18 6 3.2735 8.7290 -5.1930 19 7 3.8558 9.6126 -4.4122 20 14 2.6856 9.2293 -6.8940 21 1 2.0690 8.0590 -7.5688 22 1 1.6812 10.3161 -6.7708 23 1 3.8399 9.7105 -7.6950 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.5804 0.5028 1.4848 30 1 3.3112 1.5693 2.1675 31 1 6.0749 2.3505 1.0805 32 1 5.2770 2.8913 2.5955 33 1 5.1684 4.4821 0.4107 34 1 3.6987 4.2633 1.4091 35 1 4.8118 5.3000 -1.6817 36 1 3.2270 5.7443 -1.0041 37 1 2.1797 5.3921 -3.2244 38 1 3.7649 4.9478 -3.9013 39 1 4.6467 7.1880 -3.3091 40 1 3.0618 7.6330 -2.6321 41 1 3.9802 10.5241 -4.7197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909359015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:30 Heat of formation + Delta-G solvation = -93.397742 kcal Electronic energy + Delta-G solvation = -20503.683938 eV Core-core repulsion = 17382.930228 eV Total energy + Delta-G solvation = -3120.753710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70267 -38.73751 -37.21894 -34.14335 -33.10862 -32.16539 -31.51792 -30.05456 -27.72295 -25.32707 -24.27849 -22.83833 -21.75628 -20.52516 -19.63268 -18.67568 -17.09603 -16.93635 -16.19365 -15.67069 -15.39182 -15.23889 -14.83093 -14.38390 -13.93296 -13.76828 -13.47713 -13.20247 -12.95445 -12.53500 -12.41291 -12.15400 -11.99703 -11.84344 -11.78544 -11.53467 -11.35217 -11.30647 -11.19893 -10.78275 -10.52588 -10.47904 -9.83800 -9.63146 -9.61259 -9.22530 -8.96232 -8.56585 -8.28294 -5.93840 -3.94832 1.90986 2.87062 3.03294 3.36564 3.43559 3.49908 3.83914 4.15285 4.28751 4.52914 4.59057 4.76702 4.87291 4.92570 5.00914 5.09320 5.19250 5.32606 5.42250 5.44197 5.46877 5.52106 5.56786 5.62939 5.73730 5.75853 5.80238 5.84070 6.02161 6.20715 6.34254 6.78955 6.99293 7.21409 7.44429 7.61082 7.76059 7.88899 8.07304 8.45638 8.51717 9.12396 9.68880 11.17799 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026738 B = 0.003788 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.933391 B = 7390.445367 C = 8161.092095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C 0.345 3.655 4 O -0.431 6.431 5 C 0.087 3.913 6 H 0.099 0.901 7 C -0.118 4.118 8 C -0.131 4.131 9 C 0.098 3.902 10 N -0.616 5.616 11 C 0.535 3.465 12 O -0.533 6.533 13 C -0.131 4.131 14 C -0.095 4.095 15 C 0.021 3.979 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 -19.801 16.592 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.217 3.783 4 O -0.301 6.301 5 C -0.019 4.019 6 H 0.117 0.883 7 C -0.156 4.156 8 C -0.169 4.169 9 C -0.024 4.024 10 N -0.352 5.352 11 C 0.326 3.674 12 O -0.409 6.409 13 C -0.170 4.170 14 C -0.133 4.133 15 C -0.016 4.016 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.734 -19.403 16.016 25.219 hybrid contribution -0.182 0.307 -0.845 0.917 sum 1.552 -19.096 15.171 24.438 Atomic orbital electron populations 1.21582 0.93719 1.01629 1.03210 1.22023 0.98474 0.95965 1.04375 1.24933 0.90952 0.91201 0.71188 1.90414 1.58354 1.47725 1.33629 1.22034 0.95142 0.86235 0.98453 0.88281 1.22549 0.98904 1.00368 0.93755 1.22794 0.98312 0.94558 1.01231 1.22355 0.96371 0.95816 0.87905 1.48540 1.61087 1.09629 1.15945 1.20994 0.76845 0.90357 0.79247 1.90664 1.41576 1.65595 1.43040 1.21812 1.02857 0.89951 1.02402 1.21460 1.00616 0.99676 0.91531 1.19134 0.96793 0.88902 0.96816 1.21318 1.38231 0.95300 1.00563 0.92534 1.25021 0.95389 0.96707 0.97436 1.69975 1.43749 1.03673 1.36392 0.86538 0.78439 0.78529 0.84549 1.19689 1.21036 1.21058 0.91934 0.92133 0.92298 0.88427 0.88653 0.89116 0.90380 0.90075 0.89405 0.89696 0.91190 0.89482 0.89392 0.92687 0.92752 0.96614 0.96576 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 37.16 0.34 -1.04 16 2 C -0.17 -1.47 6.36 -27.88 -0.18 -1.65 16 3 C 0.35 4.34 5.68 -29.03 -0.16 4.18 16 4 O -0.43 -7.37 15.54 6.00 0.09 -7.28 16 5 C 0.09 0.94 3.19 -68.10 -0.22 0.73 16 6 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 7 C -0.12 -0.77 6.47 -24.89 -0.16 -0.93 16 8 C -0.13 -0.84 7.09 -24.58 -0.17 -1.02 16 9 C 0.10 0.97 6.69 -2.53 -0.02 0.96 16 10 N -0.62 -8.48 2.76 -164.31 -0.45 -8.94 16 11 C 0.53 9.73 7.17 -10.99 -0.08 9.65 16 12 O -0.53 -11.64 15.71 5.56 0.09 -11.55 16 13 C -0.13 -2.39 4.71 -27.88 -0.13 -2.52 16 14 C -0.09 -2.19 4.44 -26.73 -0.12 -2.31 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 16 C -0.52 -15.38 9.11 -34.44 -0.31 -15.70 16 17 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 18 C 0.05 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 20 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.59 8.10 -51.93 -0.42 0.16 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.49 7.84 -51.93 -0.41 0.09 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.79 7.48 -51.93 -0.39 0.40 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.42 7.85 -51.93 -0.41 1.01 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.05 1.34 8.10 -51.93 -0.42 0.92 16 38 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -36.88 339.87 -7.96 -44.84 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -7.08 Total: -5.09 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.45 Total: -7.70 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.28 Total: -35.82 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.18 Total: -18.83 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.88 -7.96 -44.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909359015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.561 kcal (2) G-P(sol) polarization free energy of solvation -36.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds