Wall clock time and date at job start Mon Mar 30 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50701 * 109.46957 * 2 1 4 4 O 1.20761 * 120.00105 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99709 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.99957 * 43.90235 * 5 3 2 7 7 C 1.54337 * 109.99101 * 282.86620 * 5 3 2 8 8 C 1.55159 * 103.01770 * 218.66623 * 7 5 3 9 9 C 1.54911 * 101.58402 * 35.30769 * 8 7 5 10 10 N 1.47026 * 109.88256 * 164.99993 * 5 3 2 11 11 C 1.34777 * 125.64403 * 298.39633 * 10 5 3 12 12 O 1.21282 * 120.00346 * 359.70988 * 11 10 5 13 13 C 1.50699 * 119.99614 * 179.71588 * 11 10 5 14 14 C 1.53006 * 109.47240 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46997 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47487 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47233 * 120.00158 * 20 18 16 23 23 H 1.48508 * 109.46883 * 239.99963 * 20 18 16 24 24 H 1.08997 * 109.46700 * 59.99817 * 1 2 3 25 25 H 1.09000 * 109.46741 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46692 * 299.99991 * 1 2 3 27 27 H 1.09000 * 109.46692 * 240.00009 * 2 1 3 28 28 H 1.08995 * 109.46916 * 119.99685 * 2 1 3 29 29 H 1.09000 * 110.84795 * 100.20044 * 7 5 3 30 30 H 1.09004 * 110.66567 * 337.04559 * 7 5 3 31 31 H 1.08997 * 111.00491 * 277.22969 * 8 7 5 32 32 H 1.09002 * 110.99984 * 153.37945 * 8 7 5 33 33 H 1.08993 * 110.36852 * 204.15148 * 9 8 7 34 34 H 1.08998 * 110.36731 * 81.82453 * 9 8 7 35 35 H 1.09000 * 109.47247 * 59.99885 * 13 11 10 36 36 H 1.08996 * 109.47258 * 300.00046 * 13 11 10 37 37 H 1.09000 * 109.46866 * 59.99931 * 14 13 11 38 38 H 1.09001 * 109.46611 * 300.00048 * 14 13 11 39 39 H 1.09000 * 109.47486 * 60.00167 * 15 14 13 40 40 H 1.09001 * 109.47362 * 299.99445 * 15 14 13 41 41 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5140 1.6962 -0.0006 6 1 4.0151 1.0388 -0.7112 7 6 4.0924 1.4748 1.4131 8 6 5.1292 2.6210 1.5500 9 6 4.4315 3.7659 0.7738 10 7 3.7615 3.1006 -0.3583 11 6 3.4260 3.6846 -1.5258 12 8 2.8747 3.0378 -2.3910 13 6 3.7359 5.1413 -1.7560 14 6 3.2555 5.5509 -3.1497 15 6 3.5708 7.0296 -3.3837 16 6 3.0970 7.4331 -4.7562 17 1 2.6229 6.7064 -5.3991 18 6 3.2735 8.7290 -5.1930 19 7 3.8558 9.6126 -4.4122 20 14 2.6856 9.2293 -6.8940 21 1 2.0690 8.0590 -7.5688 22 1 1.6812 10.3161 -6.7708 23 1 3.8399 9.7105 -7.6950 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.5804 0.5028 1.4848 30 1 3.3112 1.5693 2.1675 31 1 6.0749 2.3505 1.0805 32 1 5.2770 2.8913 2.5955 33 1 5.1684 4.4821 0.4107 34 1 3.6987 4.2633 1.4091 35 1 4.8118 5.3000 -1.6817 36 1 3.2270 5.7443 -1.0041 37 1 2.1797 5.3921 -3.2244 38 1 3.7649 4.9478 -3.9013 39 1 4.6467 7.1880 -3.3091 40 1 3.0618 7.6330 -2.6321 41 1 3.9802 10.5241 -4.7197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909359015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:29 Heat of formation + Delta-G solvation = -117.284940 kcal Electronic energy + Delta-G solvation = -20504.719764 eV Core-core repulsion = 17382.930228 eV Total energy + Delta-G solvation = -3121.789536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.74008 -39.97171 -38.25211 -36.17304 -34.15504 -33.88360 -32.64102 -30.91485 -29.56588 -26.23915 -25.96125 -24.08960 -22.46744 -22.15236 -20.87009 -19.79589 -18.56212 -18.08469 -17.94505 -16.76197 -16.65046 -16.46949 -16.26573 -15.87853 -15.08879 -14.93727 -14.55390 -14.37441 -14.08311 -13.90168 -13.76349 -13.43250 -13.15509 -13.11864 -12.82932 -12.66934 -12.58079 -12.55100 -12.44499 -12.13948 -12.04123 -11.75762 -11.62721 -11.51249 -11.29221 -10.87778 -10.72093 -10.57615 -9.63821 -8.22936 -6.33370 0.98306 1.37327 1.37898 1.52033 1.55802 1.91115 2.39760 2.99569 3.09647 3.43061 3.62851 3.83959 3.97770 4.07265 4.13009 4.17245 4.21842 4.23302 4.32027 4.51585 4.64710 4.76912 4.78683 4.84610 4.88597 4.92955 4.93582 5.00966 5.02610 5.09824 5.12180 5.24046 5.29679 5.35553 5.49100 5.69173 5.81631 6.23260 6.36994 6.58845 6.81050 7.11769 7.35259 8.89025 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026738 B = 0.003788 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.933391 B = 7390.445367 C = 8161.092095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.339 3.661 4 O -0.490 6.490 5 C 0.073 3.927 6 H 0.109 0.891 7 C -0.106 4.106 8 C -0.119 4.119 9 C 0.083 3.917 10 N -0.613 5.613 11 C 0.529 3.471 12 O -0.583 6.583 13 C -0.122 4.122 14 C -0.080 4.080 15 C 0.028 3.972 16 C -0.549 4.549 17 H 0.049 0.951 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.272 1.272 24 H 0.028 0.972 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.005 0.995 40 H -0.002 1.002 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 -21.493 17.922 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.203 4.203 3 C 0.215 3.785 4 O -0.365 6.365 5 C -0.032 4.032 6 H 0.127 0.873 7 C -0.144 4.144 8 C -0.156 4.156 9 C -0.039 4.039 10 N -0.347 5.347 11 C 0.320 3.680 12 O -0.463 6.463 13 C -0.162 4.162 14 C -0.118 4.118 15 C -0.009 4.009 16 C -0.587 4.587 17 H 0.068 0.932 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.197 1.197 24 H 0.047 0.953 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.129 0.871 28 H 0.157 0.843 29 H 0.147 0.853 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.023 0.977 40 H 0.016 0.984 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.067 -21.122 17.410 27.544 hybrid contribution -0.563 0.822 -1.187 1.550 sum 2.503 -20.300 16.223 26.106 Atomic orbital electron populations 1.21593 0.94804 1.02697 1.01157 1.22112 0.97522 0.93707 1.06952 1.25730 0.91505 0.92393 0.68841 1.90405 1.59737 1.49629 1.36731 1.22481 0.94603 0.84459 1.01621 0.87325 1.22650 0.98967 1.02326 0.90430 1.22820 0.98103 0.92568 1.02158 1.22725 0.96563 0.97537 0.87065 1.48522 1.59526 1.11401 1.15209 1.20753 0.76862 0.90007 0.80387 1.90631 1.44065 1.66440 1.45133 1.21618 1.04165 0.91034 0.99372 1.21154 0.99116 0.97045 0.94510 1.19000 0.95565 0.90966 0.95350 1.21687 1.39169 0.95960 1.01883 0.93226 1.25925 0.95166 0.96479 1.01876 1.70073 1.44176 1.04205 1.38395 0.85412 0.78352 0.78225 0.79145 1.19365 1.19978 1.19700 0.95315 0.89364 0.93119 0.87123 0.84262 0.85322 0.89897 0.88987 0.86740 0.89206 0.91384 0.87167 0.88651 0.94921 0.93779 0.97690 0.98374 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.20 71.99 0.66 -2.04 16 2 C -0.17 -2.52 6.36 29.85 0.19 -2.33 16 3 C 0.34 8.32 5.68 29.10 0.17 8.49 16 4 O -0.49 -17.43 15.54 -1.45 -0.02 -17.45 16 5 C 0.07 1.45 3.19 44.60 0.14 1.59 16 6 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 7 C -0.11 -0.96 6.47 31.79 0.21 -0.75 16 8 C -0.12 -1.06 7.09 31.99 0.23 -0.83 16 9 C 0.08 1.49 6.69 86.86 0.58 2.07 16 10 N -0.61 -16.49 2.76 -792.16 -2.19 -18.68 16 11 C 0.53 19.75 7.17 87.66 0.63 20.38 16 12 O -0.58 -26.56 15.71 -3.04 -0.05 -26.61 16 13 C -0.12 -4.60 4.71 29.85 0.14 -4.46 16 14 C -0.08 -3.88 4.44 30.60 0.14 -3.74 16 15 C 0.03 1.58 4.97 29.85 0.15 1.73 16 16 C -0.55 -33.70 9.11 25.60 0.23 -33.47 16 17 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 18 C 0.00 0.21 5.46 84.66 0.46 0.68 16 19 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 20 Si 0.96 46.48 29.54 68.60 2.03 48.51 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 H 0.03 0.71 8.10 -2.39 -0.02 0.69 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 27 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.72 7.84 -2.38 -0.02 0.70 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 33 H 0.09 1.51 7.48 -2.39 -0.02 1.50 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 3.58 7.85 -2.39 -0.02 3.56 16 36 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.03 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.04 2.18 8.10 -2.39 -0.02 2.16 16 39 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -84.73 339.87 4.96 -79.77 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 0.98 Total: 4.52 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 3.92 Total: -12.69 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.90 Total: -76.05 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.07 Total: -44.06 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -84.73 4.96 -79.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909359015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.516 kcal (2) G-P(sol) polarization free energy of solvation -84.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds