Wall clock time and date at job start Mon Mar 30 2020 06:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99732 * 3 2 1 5 5 H 1.48508 * 109.47346 * 29.99935 * 3 2 1 6 6 H 1.48505 * 109.47293 * 149.99780 * 3 2 1 7 7 C 1.37874 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99606 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47357 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47704 * 180.02562 * 11 10 9 13 13 C 1.46894 * 111.00332 * 173.31787 * 12 11 10 14 14 H 1.09005 * 109.47303 * 336.22195 * 13 12 11 15 15 C 1.52997 * 109.47209 * 96.22565 * 13 12 11 16 16 C 1.52999 * 117.49746 * 1.68021 * 15 13 12 17 17 C 1.52999 * 117.49596 * 293.01811 * 15 13 12 18 18 C 1.53002 * 109.47025 * 216.22465 * 13 12 11 19 19 C 1.53175 * 109.54371 * 179.82010 * 18 13 12 20 20 C 1.53104 * 109.15948 * 183.24107 * 19 18 13 21 21 O 1.42900 * 109.48427 * 57.47655 * 20 19 18 22 22 C 1.42900 * 114.09933 * 298.88798 * 21 20 19 23 23 C 1.53090 * 109.41387 * 61.16039 * 22 21 20 24 24 H 0.97000 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46740 * 59.99934 * 9 7 2 26 26 H 1.08995 * 109.46985 * 300.00077 * 9 7 2 27 27 H 1.08997 * 109.47173 * 60.00021 * 10 9 7 28 28 H 1.09002 * 109.47428 * 300.00392 * 10 9 7 29 29 H 1.09006 * 109.47195 * 60.00041 * 11 10 9 30 30 H 1.09002 * 109.47059 * 300.00480 * 11 10 9 31 31 H 1.00893 * 110.99768 * 297.27660 * 12 11 10 32 32 H 1.08998 * 115.55026 * 147.35333 * 15 13 12 33 33 H 1.08997 * 117.50016 * 359.97438 * 16 15 13 34 34 H 1.08999 * 117.49778 * 145.02421 * 16 15 13 35 35 H 1.08998 * 117.50204 * 214.97963 * 17 15 13 36 36 H 1.08994 * 117.50217 * 359.97438 * 17 15 13 37 37 H 1.08994 * 109.54510 * 299.99942 * 18 13 12 38 38 H 1.08997 * 109.52482 * 303.05897 * 19 18 13 39 39 H 1.09005 * 109.52051 * 63.24627 * 19 18 13 40 40 H 1.09005 * 109.40635 * 297.49825 * 20 19 18 41 41 H 1.09003 * 109.49558 * 177.51048 * 20 19 18 42 42 H 1.09005 * 109.48457 * 301.17710 * 22 21 20 43 43 H 1.08999 * 109.49265 * 181.15160 * 22 21 20 44 44 H 1.09005 * 109.52244 * 182.48761 * 23 22 21 45 45 H 1.08997 * 109.57498 * 62.33192 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4349 -6.1037 0.0005 13 6 1.7416 -7.3889 0.1595 14 1 0.7814 -7.2257 0.6490 15 6 1.5123 -8.0183 -1.2161 16 6 2.0487 -7.2659 -2.4355 17 6 0.5428 -7.3099 -2.1643 18 6 2.5965 -8.3273 1.0136 19 6 1.8730 -9.6666 1.1842 20 6 2.6975 -10.5693 2.1059 21 8 2.8978 -9.9142 3.3600 22 6 3.6121 -8.6801 3.2661 23 6 2.8234 -7.7008 2.3929 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6241 -2.5566 0.8902 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.8540 -5.0446 -0.8904 30 1 0.8533 -5.0450 0.8896 31 1 2.9985 -6.0979 -0.8363 32 1 1.5388 -9.1076 -1.2450 33 1 2.5646 -6.3223 -2.2578 34 1 2.4279 -7.8601 -3.2668 35 1 -0.0681 -7.9330 -2.8173 36 1 0.0680 -6.3957 -1.8080 37 1 3.5570 -8.4914 0.5252 38 1 0.8912 -9.4966 1.6260 39 1 1.7578 -10.1449 0.2115 40 1 3.6635 -10.7731 1.6439 41 1 2.1662 -11.5074 2.2666 42 1 4.5901 -8.8591 2.8192 43 1 3.7398 -8.2570 4.2625 44 1 3.3874 -6.7744 2.2838 45 1 1.8614 -7.4887 2.8594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924940920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:23 Heat of formation + Delta-G solvation = -40.818541 kcal Electronic energy + Delta-G solvation = -20912.980470 eV Core-core repulsion = 17930.339860 eV Total energy + Delta-G solvation = -2982.640610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.97675 -38.43458 -34.99937 -34.30158 -32.87298 -31.18334 -30.70812 -27.67373 -25.54478 -23.83559 -23.15552 -23.00180 -21.81245 -20.28802 -20.27030 -19.33351 -16.81995 -16.42556 -16.16232 -16.02740 -15.30271 -14.82189 -14.65121 -14.41014 -14.10115 -13.87290 -13.44044 -12.72540 -12.60539 -12.34186 -12.20383 -11.96741 -11.68634 -11.57764 -11.40564 -11.30236 -11.10854 -10.85707 -10.61019 -10.56159 -10.40005 -10.36159 -10.23603 -10.04669 -9.69384 -9.55421 -9.29307 -9.02915 -8.33012 -8.07825 -5.98192 -4.00209 3.33018 3.39176 3.42975 3.67247 3.79945 4.29677 4.44437 4.48722 4.75831 4.82321 4.88339 4.90301 4.96528 5.08100 5.17978 5.19179 5.35926 5.37660 5.40343 5.54306 5.56621 5.63533 5.65791 5.75881 5.85036 5.88256 5.89453 5.94892 6.05860 6.11033 6.13241 6.29181 6.37655 6.40749 6.73380 6.80409 7.11699 7.15765 7.37952 7.66613 7.70331 7.85494 8.02310 8.45717 9.07045 9.63768 11.13241 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.003723 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.878810 B = 7518.900694 C = 8356.508450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.687 5.687 13 C 0.121 3.879 14 H 0.076 0.924 15 C -0.179 4.179 16 C -0.187 4.187 17 C -0.182 4.182 18 C -0.069 4.069 19 C -0.153 4.153 20 C 0.063 3.937 21 O -0.388 6.388 22 C 0.059 3.941 23 C -0.141 4.141 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.340 0.660 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 -21.310 0.037 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.072 4.072 12 N -0.321 5.321 13 C 0.011 3.989 14 H 0.095 0.905 15 C -0.199 4.199 16 C -0.224 4.224 17 C -0.219 4.219 18 C -0.089 4.089 19 C -0.191 4.191 20 C -0.014 4.014 21 O -0.307 6.307 22 C -0.018 4.018 23 C -0.179 4.179 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.388 -21.179 0.883 21.647 hybrid contribution 0.013 0.996 -1.332 1.663 sum 4.400 -20.183 -0.449 20.662 Atomic orbital electron populations 1.69968 1.06056 1.26529 1.51065 1.25028 0.94843 0.99247 0.95404 0.86604 0.79891 0.83515 0.78055 1.20726 1.21239 1.19848 1.21257 0.93034 0.91071 1.50283 0.92709 1.19062 0.94023 0.91435 0.97022 1.21595 0.99114 0.92972 1.00602 1.22259 0.94096 0.90960 0.99866 1.60703 1.24599 1.01498 1.45277 1.21119 0.96701 0.89231 0.91884 0.90545 1.23243 1.05082 0.99219 0.92319 1.23103 0.97136 1.02797 0.99375 1.23104 0.92615 1.03113 1.03081 1.21064 0.98817 0.93255 0.95736 1.22317 1.00260 0.96522 1.00036 1.22527 0.98719 0.95259 0.84910 1.87907 1.77036 1.36203 1.29507 1.22656 0.94017 0.84284 1.00805 1.22102 1.01660 0.99540 0.94557 0.93060 0.96913 0.96647 0.92637 0.93842 0.95520 0.91659 0.83643 0.87605 0.88035 0.88863 0.89085 0.88226 0.91220 0.91077 0.90983 0.93521 0.89316 0.93487 0.89089 0.89154 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.16 5.47 -26.73 -0.15 -2.31 16 11 C 0.06 0.95 5.37 -3.83 -0.02 0.93 16 12 N -0.69 -9.47 5.36 -106.73 -0.57 -10.04 16 13 C 0.12 1.43 2.01 -67.72 -0.14 1.29 16 14 H 0.08 1.00 7.54 -51.93 -0.39 0.61 16 15 C -0.18 -1.88 5.50 -90.62 -0.50 -2.38 16 16 C -0.19 -2.02 9.58 -26.69 -0.26 -2.27 16 17 C -0.18 -2.06 9.91 -26.69 -0.26 -2.32 16 18 C -0.07 -0.73 2.04 -90.43 -0.18 -0.92 16 19 C -0.15 -1.40 5.12 -26.59 -0.14 -1.54 16 20 C 0.06 0.57 6.84 37.21 0.25 0.83 16 21 O -0.39 -4.51 10.77 -35.23 -0.38 -4.89 16 22 C 0.06 0.62 6.84 37.20 0.25 0.87 16 23 C -0.14 -1.61 5.22 -26.59 -0.14 -1.75 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.45 5.83 -51.93 -0.30 0.15 16 30 H 0.06 1.14 7.89 -51.93 -0.41 0.73 16 31 H 0.34 4.54 5.47 -39.30 -0.21 4.32 16 32 H 0.11 0.98 6.14 -51.93 -0.32 0.66 16 33 H 0.10 1.21 5.67 -51.93 -0.29 0.92 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.30 6.08 -51.93 -0.32 0.98 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.57 6.29 -51.93 -0.33 0.24 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.14 7.72 -51.93 -0.40 0.74 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -30.02 344.24 -9.88 -39.91 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -8.01 Total: 2.25 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -1.82 Total: -22.77 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.16 Total: -36.52 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.38 Total: -4.89 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.02 -9.88 -39.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.913 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds