Wall clock time and date at job start Mon Mar 30 2020 06:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99732 * 3 2 1 5 5 H 1.48508 * 109.47346 * 29.99935 * 3 2 1 6 6 H 1.48505 * 109.47293 * 149.99780 * 3 2 1 7 7 C 1.37874 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99606 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47357 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47704 * 180.02562 * 11 10 9 13 13 C 1.46894 * 111.00332 * 173.31787 * 12 11 10 14 14 H 1.09005 * 109.47303 * 336.22195 * 13 12 11 15 15 C 1.52997 * 109.47209 * 96.22565 * 13 12 11 16 16 C 1.52999 * 117.49746 * 1.68021 * 15 13 12 17 17 C 1.52999 * 117.49596 * 293.01811 * 15 13 12 18 18 C 1.53002 * 109.47025 * 216.22465 * 13 12 11 19 19 C 1.53175 * 109.54371 * 179.82010 * 18 13 12 20 20 C 1.53104 * 109.15948 * 183.24107 * 19 18 13 21 21 O 1.42900 * 109.48427 * 57.47655 * 20 19 18 22 22 C 1.42900 * 114.09933 * 298.88798 * 21 20 19 23 23 C 1.53090 * 109.41387 * 61.16039 * 22 21 20 24 24 H 0.97000 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46740 * 59.99934 * 9 7 2 26 26 H 1.08995 * 109.46985 * 300.00077 * 9 7 2 27 27 H 1.08997 * 109.47173 * 60.00021 * 10 9 7 28 28 H 1.09002 * 109.47428 * 300.00392 * 10 9 7 29 29 H 1.09006 * 109.47195 * 60.00041 * 11 10 9 30 30 H 1.09002 * 109.47059 * 300.00480 * 11 10 9 31 31 H 1.00893 * 110.99768 * 297.27660 * 12 11 10 32 32 H 1.08998 * 115.55026 * 147.35333 * 15 13 12 33 33 H 1.08997 * 117.50016 * 359.97438 * 16 15 13 34 34 H 1.08999 * 117.49778 * 145.02421 * 16 15 13 35 35 H 1.08998 * 117.50204 * 214.97963 * 17 15 13 36 36 H 1.08994 * 117.50217 * 359.97438 * 17 15 13 37 37 H 1.08994 * 109.54510 * 299.99942 * 18 13 12 38 38 H 1.08997 * 109.52482 * 303.05897 * 19 18 13 39 39 H 1.09005 * 109.52051 * 63.24627 * 19 18 13 40 40 H 1.09005 * 109.40635 * 297.49825 * 20 19 18 41 41 H 1.09003 * 109.49558 * 177.51048 * 20 19 18 42 42 H 1.09005 * 109.48457 * 301.17710 * 22 21 20 43 43 H 1.08999 * 109.49265 * 181.15160 * 22 21 20 44 44 H 1.09005 * 109.52244 * 182.48761 * 23 22 21 45 45 H 1.08997 * 109.57498 * 62.33192 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4349 -6.1037 0.0005 13 6 1.7416 -7.3889 0.1595 14 1 0.7814 -7.2257 0.6490 15 6 1.5123 -8.0183 -1.2161 16 6 2.0487 -7.2659 -2.4355 17 6 0.5428 -7.3099 -2.1643 18 6 2.5965 -8.3273 1.0136 19 6 1.8730 -9.6666 1.1842 20 6 2.6975 -10.5693 2.1059 21 8 2.8978 -9.9142 3.3600 22 6 3.6121 -8.6801 3.2661 23 6 2.8234 -7.7008 2.3929 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6241 -2.5566 0.8902 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.8540 -5.0446 -0.8904 30 1 0.8533 -5.0450 0.8896 31 1 2.9985 -6.0979 -0.8363 32 1 1.5388 -9.1076 -1.2450 33 1 2.5646 -6.3223 -2.2578 34 1 2.4279 -7.8601 -3.2668 35 1 -0.0681 -7.9330 -2.8173 36 1 0.0680 -6.3957 -1.8080 37 1 3.5570 -8.4914 0.5252 38 1 0.8912 -9.4966 1.6260 39 1 1.7578 -10.1449 0.2115 40 1 3.6635 -10.7731 1.6439 41 1 2.1662 -11.5074 2.2666 42 1 4.5901 -8.8591 2.8192 43 1 3.7398 -8.2570 4.2625 44 1 3.3874 -6.7744 2.2838 45 1 1.8614 -7.4887 2.8594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924940920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:23 Heat of formation + Delta-G solvation = -58.172040 kcal Electronic energy + Delta-G solvation = -20913.732974 eV Core-core repulsion = 17930.339860 eV Total energy + Delta-G solvation = -2983.393114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88389 -39.34492 -36.53336 -35.36193 -34.62938 -32.48117 -31.88461 -29.03902 -27.13723 -24.68752 -24.50406 -23.97681 -23.06869 -21.86599 -21.14309 -20.38899 -18.50088 -17.81707 -17.18382 -16.85683 -16.57952 -16.21661 -15.66244 -15.53724 -15.47968 -15.16863 -14.37555 -14.26935 -14.01329 -13.58005 -13.32381 -13.21902 -13.10466 -12.84975 -12.72557 -12.52485 -12.39805 -12.23257 -12.13974 -11.95748 -11.57840 -11.48414 -11.30955 -11.23723 -11.07833 -11.03373 -10.91229 -10.56365 -10.36812 -9.24346 -8.20978 -6.32197 1.39213 1.40789 1.52145 2.40244 2.77802 3.04404 3.12088 3.23968 3.56299 3.87417 3.97262 4.02827 4.08840 4.12175 4.18035 4.22721 4.32508 4.40018 4.47263 4.53845 4.59963 4.65263 4.74700 4.78496 4.84246 4.90622 4.97559 4.98107 5.02006 5.03424 5.11856 5.19580 5.22277 5.26890 5.30616 5.40685 5.50136 5.52872 5.74022 5.84927 6.10805 6.26938 6.34699 6.54038 6.84745 7.37184 8.90962 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.003723 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.878810 B = 7518.900694 C = 8356.508450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.089 4.089 11 C 0.073 3.927 12 N -0.684 5.684 13 C 0.122 3.878 14 H 0.061 0.939 15 C -0.169 4.169 16 C -0.185 4.185 17 C -0.193 4.193 18 C -0.063 4.063 19 C -0.147 4.147 20 C 0.058 3.942 21 O -0.407 6.407 22 C 0.061 3.939 23 C -0.139 4.139 24 H 0.263 0.737 25 H -0.011 1.011 26 H -0.011 1.011 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.025 0.975 30 H 0.054 0.946 31 H 0.346 0.654 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.933 -22.586 -0.615 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.127 4.127 11 C -0.056 4.056 12 N -0.318 5.318 13 C 0.012 3.988 14 H 0.079 0.921 15 C -0.188 4.188 16 C -0.222 4.222 17 C -0.230 4.230 18 C -0.083 4.083 19 C -0.185 4.185 20 C -0.019 4.019 21 O -0.327 6.327 22 C -0.015 4.015 23 C -0.177 4.177 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.170 0.830 32 H 0.147 0.853 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.887 -22.476 0.228 23.236 hybrid contribution -0.491 1.372 -1.125 1.840 sum 5.396 -21.105 -0.897 21.802 Atomic orbital electron populations 1.70101 1.07830 1.27765 1.51752 1.26000 0.95785 1.03426 0.94705 0.85438 0.78674 0.78346 0.78543 1.19671 1.20698 1.18729 1.21694 0.93517 0.92395 1.50453 0.92258 1.18961 0.94409 0.93239 0.94538 1.21339 0.97907 0.92940 1.00548 1.21906 0.93893 0.90485 0.99301 1.60619 1.23960 1.01556 1.45702 1.21133 0.96116 0.88478 0.93104 0.92128 1.23217 1.04325 1.00195 0.91080 1.23142 0.96457 1.02518 1.00085 1.23100 0.93192 1.02677 1.04018 1.21014 0.98958 0.93595 0.94686 1.22278 0.99477 0.95651 1.01112 1.22722 0.99577 0.95528 0.84031 1.87885 1.77264 1.36428 1.31108 1.22654 0.94156 0.83833 1.00903 1.22044 1.00712 0.99430 0.95483 0.92778 0.99252 0.99290 0.93023 0.93308 0.95723 0.92736 0.82992 0.85344 0.89389 0.86856 0.87482 0.90652 0.90555 0.92099 0.88959 0.92251 0.87729 0.92309 0.88770 0.90623 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.54 -31.61 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.76 5.47 30.59 0.17 -3.59 16 11 C 0.07 2.54 5.37 86.30 0.46 3.00 16 12 N -0.68 -18.66 5.36 -491.57 -2.63 -21.30 16 13 C 0.12 2.76 2.01 44.92 0.09 2.85 16 14 H 0.06 1.59 7.54 -2.38 -0.02 1.58 16 15 C -0.17 -3.21 5.50 -10.80 -0.06 -3.26 16 16 C -0.18 -3.64 9.58 30.62 0.29 -3.35 16 17 C -0.19 -4.14 9.91 30.62 0.30 -3.84 16 18 C -0.06 -1.24 2.04 -10.67 -0.02 -1.26 16 19 C -0.15 -2.35 5.12 30.69 0.16 -2.20 16 20 C 0.06 0.91 6.84 72.02 0.49 1.40 16 21 O -0.41 -8.86 10.77 -148.98 -1.60 -10.46 16 22 C 0.06 1.21 6.84 72.01 0.49 1.70 16 23 C -0.14 -3.12 5.22 30.69 0.16 -2.96 16 24 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 25 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 26 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.02 0.87 5.83 -2.38 -0.01 0.85 16 30 H 0.05 2.00 7.89 -2.39 -0.02 1.98 16 31 H 0.35 8.91 5.47 -89.70 -0.49 8.42 16 32 H 0.13 1.91 6.14 -2.39 -0.01 1.89 16 33 H 0.09 2.00 5.67 -2.39 -0.01 1.98 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 2.00 6.08 -2.39 -0.01 1.98 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.12 6.29 -2.38 -0.01 1.10 16 40 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.91 7.72 -2.38 -0.02 1.89 16 45 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -65.17 344.24 1.91 -63.26 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.46 Total: 20.07 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 3.38 Total: -40.95 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.35 Total: -78.83 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.60 Total: -10.46 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.17 1.91 -63.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.088 kcal (2) G-P(sol) polarization free energy of solvation -65.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds