Wall clock time and date at job start Mon Mar 30 2020 06:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00099 * 2 1 4 4 H 1.48504 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47323 * 299.99854 * 3 2 1 6 6 H 1.48503 * 109.47388 * 59.99821 * 3 2 1 7 7 C 1.37878 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99613 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46969 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47046 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47044 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99927 * 183.70703 * 12 11 10 14 14 H 1.08996 * 109.47601 * 176.67105 * 13 12 11 15 15 C 1.52998 * 109.47503 * 56.67059 * 13 12 11 16 16 C 1.53001 * 117.50357 * 133.19007 * 15 13 12 17 17 C 1.52997 * 117.49976 * 64.52764 * 15 13 12 18 18 C 1.53002 * 109.46977 * 296.67257 * 13 12 11 19 19 C 1.53182 * 109.54581 * 180.44565 * 18 13 12 20 20 C 1.53089 * 109.16317 * 176.84538 * 19 18 13 21 21 O 1.42905 * 109.41819 * 302.38914 * 20 19 18 22 22 C 1.42907 * 114.09534 * 61.15842 * 21 20 19 23 23 C 1.53097 * 109.41439 * 298.84312 * 22 21 20 24 24 H 0.97007 * 119.99763 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46809 * 60.00241 * 9 7 2 26 26 H 1.09002 * 109.47191 * 299.99981 * 9 7 2 27 27 H 1.09007 * 109.47121 * 60.00491 * 10 9 7 28 28 H 1.08999 * 109.47466 * 300.00489 * 10 9 7 29 29 H 1.08997 * 109.46617 * 60.00378 * 11 10 9 30 30 H 1.08999 * 109.47541 * 300.00631 * 11 10 9 31 31 H 1.00901 * 111.00091 * 307.65251 * 12 11 10 32 32 H 1.09004 * 115.55135 * 278.86195 * 15 13 12 33 33 H 1.09003 * 117.49244 * 359.97438 * 16 15 13 34 34 H 1.08996 * 117.50250 * 145.02472 * 16 15 13 35 35 H 1.09006 * 117.49941 * 214.98337 * 17 15 13 36 36 H 1.09005 * 117.49830 * 0.02562 * 17 15 13 37 37 H 1.09001 * 109.61820 * 60.22250 * 18 13 12 38 38 H 1.09002 * 109.51933 * 296.75101 * 19 18 13 39 39 H 1.09002 * 109.52325 * 56.93855 * 19 18 13 40 40 H 1.09004 * 109.47747 * 182.41037 * 20 19 18 41 41 H 1.08992 * 109.48289 * 62.37526 * 20 19 18 42 42 H 1.08998 * 109.47952 * 178.86426 * 22 21 20 43 43 H 1.08994 * 109.48799 * 58.83184 * 22 21 20 44 44 H 1.08999 * 109.52157 * 297.70661 * 23 22 21 45 45 H 1.08994 * 109.52016 * 177.51487 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7365 -7.3931 -0.0899 14 1 2.4678 -8.1992 -0.1481 15 6 0.8561 -7.4121 -1.3411 16 6 0.9229 -8.6533 -2.2332 17 6 1.5570 -7.3403 -2.6992 18 6 0.8628 -7.5858 1.1513 19 6 0.1424 -8.9350 1.0665 20 6 -0.6668 -9.1540 2.3475 21 8 0.2064 -9.0940 3.4772 22 6 0.8716 -7.8390 3.6344 23 6 1.7427 -7.5672 2.4051 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8922 29 1 0.8525 -5.0446 -0.8905 30 1 0.8543 -5.0450 0.8894 31 1 3.1065 -6.0046 -0.7481 32 1 -0.1079 -6.9125 -1.2452 33 1 1.5944 -9.4562 -1.9289 34 1 0.0030 -8.9700 -2.7246 35 1 1.0539 -6.7937 -3.4969 36 1 2.6454 -7.2799 -2.7013 37 1 0.1278 -6.7831 1.2097 38 1 -0.5282 -8.9364 0.2073 39 1 0.8764 -9.7336 0.9583 40 1 -1.1474 -10.1317 2.3111 41 1 -1.4272 -8.3780 2.4342 42 1 1.4992 -7.8693 4.5251 43 1 0.1314 -7.0456 3.7381 44 1 2.5088 -8.3382 2.3239 45 1 2.2163 -6.5904 2.5032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924940921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:26 Heat of formation + Delta-G solvation = -51.507090 kcal Electronic energy + Delta-G solvation = -21090.489458 eV Core-core repulsion = 18107.385358 eV Total energy + Delta-G solvation = -2983.104100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93332 -38.15152 -35.42687 -34.06366 -32.83177 -31.11318 -30.77823 -27.38350 -25.58720 -23.69933 -23.19051 -22.57788 -22.35767 -20.42270 -20.17805 -19.24102 -16.64075 -16.20047 -16.00896 -15.61335 -15.18554 -15.00039 -14.69521 -14.54014 -14.26582 -13.89504 -13.43486 -13.01071 -12.44975 -12.30800 -12.15464 -11.93350 -11.66077 -11.53332 -11.49975 -11.28940 -10.94096 -10.84916 -10.65756 -10.49692 -10.43392 -10.30271 -10.20972 -10.12216 -9.65631 -9.45733 -9.30888 -9.02428 -8.33832 -8.11018 -5.98904 -4.00739 3.31571 3.39036 3.43515 3.70050 3.85543 4.38183 4.41946 4.48580 4.77806 4.85038 4.91606 4.96002 5.01632 5.10404 5.20940 5.28717 5.37132 5.42033 5.48053 5.53384 5.62823 5.68594 5.77323 5.81986 5.82562 5.88980 5.89791 5.98959 6.01782 6.10230 6.16006 6.32568 6.36461 6.44957 6.74674 6.81534 7.15534 7.16966 7.37823 7.66360 7.70204 7.85187 8.01853 8.45445 9.06810 9.63341 11.12586 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.004109 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.950267 B = 6812.768375 C = 7681.501681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.057 3.943 12 N -0.678 5.678 13 C 0.126 3.874 14 H 0.075 0.925 15 C -0.180 4.180 16 C -0.176 4.176 17 C -0.178 4.178 18 C -0.078 4.078 19 C -0.147 4.147 20 C 0.061 3.939 21 O -0.388 6.388 22 C 0.057 3.943 23 C -0.139 4.139 24 H 0.259 0.741 25 H 0.012 0.988 26 H 0.015 0.985 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.337 0.663 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 -19.883 0.341 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.071 4.071 12 N -0.307 5.307 13 C 0.015 3.985 14 H 0.093 0.907 15 C -0.200 4.200 16 C -0.214 4.214 17 C -0.215 4.215 18 C -0.096 4.096 19 C -0.185 4.185 20 C -0.016 4.016 21 O -0.307 6.307 22 C -0.019 4.019 23 C -0.177 4.177 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.155 0.845 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.539 -19.919 1.172 19.960 hybrid contribution -0.016 1.288 -1.320 1.845 sum 0.523 -18.630 -0.148 18.638 Atomic orbital electron populations 1.69981 1.06063 1.26404 1.51195 1.25027 0.94833 0.99247 0.95411 0.86555 0.80166 0.83859 0.77550 1.19721 1.21065 1.21018 1.21303 0.93074 0.91082 1.50114 0.92665 1.19049 0.94003 0.91425 0.96987 1.21633 0.99155 0.93289 1.00508 1.22134 0.94502 0.90521 0.99953 1.60781 1.17401 1.01146 1.51378 1.21171 0.93631 0.92769 0.90926 0.90654 1.23131 1.02087 1.02090 0.92683 1.22937 1.02731 0.91539 1.04199 1.22894 1.00037 1.00807 0.97771 1.21169 0.97170 0.96932 0.94376 1.22206 1.00145 0.97915 0.98255 1.22552 0.91785 1.01720 0.85539 1.87892 1.60675 1.35160 1.46990 1.22663 0.95273 0.85617 0.98382 1.22091 0.98206 1.03680 0.93706 0.93127 0.96918 0.96699 0.92754 0.93803 0.95298 0.91630 0.84486 0.87934 0.89019 0.89211 0.88881 0.88968 0.90817 0.90835 0.91340 0.89311 0.93349 0.89097 0.93230 0.91656 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.22 5.38 -26.73 -0.14 -2.36 16 11 C 0.06 0.96 5.02 -3.82 -0.02 0.94 16 12 N -0.68 -9.30 5.75 -106.73 -0.61 -9.91 16 13 C 0.13 1.45 2.24 -67.71 -0.15 1.30 16 14 H 0.08 0.84 7.94 -51.93 -0.41 0.43 16 15 C -0.18 -2.01 2.63 -90.62 -0.24 -2.25 16 16 C -0.18 -1.66 10.07 -26.69 -0.27 -1.93 16 17 C -0.18 -1.91 10.00 -26.69 -0.27 -2.17 16 18 C -0.08 -0.89 1.56 -90.43 -0.14 -1.03 16 19 C -0.15 -1.46 5.12 -26.59 -0.14 -1.59 16 20 C 0.06 0.62 6.84 37.20 0.25 0.87 16 21 O -0.39 -4.77 10.77 -35.23 -0.38 -5.15 16 22 C 0.06 0.65 6.84 37.21 0.25 0.91 16 23 C -0.14 -1.63 5.21 -26.59 -0.14 -1.77 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.50 6.60 -51.93 -0.34 0.15 16 30 H 0.07 1.14 6.58 -51.93 -0.34 0.80 16 31 H 0.34 4.48 8.45 -39.29 -0.33 4.15 16 32 H 0.10 1.28 7.74 -51.93 -0.40 0.88 16 33 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.95 8.06 -51.93 -0.42 0.54 16 37 H 0.07 0.97 6.58 -51.93 -0.34 0.63 16 38 H 0.07 0.68 7.25 -51.93 -0.38 0.31 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.17 7.72 -51.93 -0.40 0.77 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -29.90 349.88 -9.95 -39.86 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.40 Total: 1.79 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -1.55 Total: -22.23 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.12 Total: -36.34 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.38 Total: -5.15 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.90 -9.95 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.650 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds