Wall clock time and date at job start Mon Mar 30 2020 06:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00099 * 2 1 4 4 H 1.48504 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47323 * 299.99854 * 3 2 1 6 6 H 1.48503 * 109.47388 * 59.99821 * 3 2 1 7 7 C 1.37878 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99613 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46969 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47046 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47044 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99927 * 183.70703 * 12 11 10 14 14 H 1.08996 * 109.47601 * 176.67105 * 13 12 11 15 15 C 1.52998 * 109.47503 * 56.67059 * 13 12 11 16 16 C 1.53001 * 117.50357 * 133.19007 * 15 13 12 17 17 C 1.52997 * 117.49976 * 64.52764 * 15 13 12 18 18 C 1.53002 * 109.46977 * 296.67257 * 13 12 11 19 19 C 1.53182 * 109.54581 * 180.44565 * 18 13 12 20 20 C 1.53089 * 109.16317 * 176.84538 * 19 18 13 21 21 O 1.42905 * 109.41819 * 302.38914 * 20 19 18 22 22 C 1.42907 * 114.09534 * 61.15842 * 21 20 19 23 23 C 1.53097 * 109.41439 * 298.84312 * 22 21 20 24 24 H 0.97007 * 119.99763 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46809 * 60.00241 * 9 7 2 26 26 H 1.09002 * 109.47191 * 299.99981 * 9 7 2 27 27 H 1.09007 * 109.47121 * 60.00491 * 10 9 7 28 28 H 1.08999 * 109.47466 * 300.00489 * 10 9 7 29 29 H 1.08997 * 109.46617 * 60.00378 * 11 10 9 30 30 H 1.08999 * 109.47541 * 300.00631 * 11 10 9 31 31 H 1.00901 * 111.00091 * 307.65251 * 12 11 10 32 32 H 1.09004 * 115.55135 * 278.86195 * 15 13 12 33 33 H 1.09003 * 117.49244 * 359.97438 * 16 15 13 34 34 H 1.08996 * 117.50250 * 145.02472 * 16 15 13 35 35 H 1.09006 * 117.49941 * 214.98337 * 17 15 13 36 36 H 1.09005 * 117.49830 * 0.02562 * 17 15 13 37 37 H 1.09001 * 109.61820 * 60.22250 * 18 13 12 38 38 H 1.09002 * 109.51933 * 296.75101 * 19 18 13 39 39 H 1.09002 * 109.52325 * 56.93855 * 19 18 13 40 40 H 1.09004 * 109.47747 * 182.41037 * 20 19 18 41 41 H 1.08992 * 109.48289 * 62.37526 * 20 19 18 42 42 H 1.08998 * 109.47952 * 178.86426 * 22 21 20 43 43 H 1.08994 * 109.48799 * 58.83184 * 22 21 20 44 44 H 1.08999 * 109.52157 * 297.70661 * 23 22 21 45 45 H 1.08994 * 109.52016 * 177.51487 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7365 -7.3931 -0.0899 14 1 2.4678 -8.1992 -0.1481 15 6 0.8561 -7.4121 -1.3411 16 6 0.9229 -8.6533 -2.2332 17 6 1.5570 -7.3403 -2.6992 18 6 0.8628 -7.5858 1.1513 19 6 0.1424 -8.9350 1.0665 20 6 -0.6668 -9.1540 2.3475 21 8 0.2064 -9.0940 3.4772 22 6 0.8716 -7.8390 3.6344 23 6 1.7427 -7.5672 2.4051 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8922 29 1 0.8525 -5.0446 -0.8905 30 1 0.8543 -5.0450 0.8894 31 1 3.1065 -6.0046 -0.7481 32 1 -0.1079 -6.9125 -1.2452 33 1 1.5944 -9.4562 -1.9289 34 1 0.0030 -8.9700 -2.7246 35 1 1.0539 -6.7937 -3.4969 36 1 2.6454 -7.2799 -2.7013 37 1 0.1278 -6.7831 1.2097 38 1 -0.5282 -8.9364 0.2073 39 1 0.8764 -9.7336 0.9583 40 1 -1.1474 -10.1317 2.3111 41 1 -1.4272 -8.3780 2.4342 42 1 1.4992 -7.8693 4.5251 43 1 0.1314 -7.0456 3.7381 44 1 2.5088 -8.3382 2.3239 45 1 2.2163 -6.5904 2.5032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924940921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:25 Heat of formation + Delta-G solvation = -69.005625 kcal Electronic energy + Delta-G solvation = -21091.248251 eV Core-core repulsion = 18107.385358 eV Total energy + Delta-G solvation = -2983.862894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86989 -39.09199 -36.74684 -35.48731 -34.42855 -32.54056 -31.89739 -28.86256 -27.04451 -24.73616 -24.58201 -23.65349 -23.16466 -22.13697 -21.14468 -20.30633 -18.47246 -17.52150 -16.91567 -16.63552 -16.47161 -16.27199 -16.05531 -15.58385 -15.47766 -15.26022 -14.34837 -14.32996 -14.17208 -13.51173 -13.44557 -13.12705 -13.11261 -12.81608 -12.61017 -12.52761 -12.42235 -12.20980 -12.16916 -11.79734 -11.59528 -11.46071 -11.35464 -11.23860 -11.13923 -10.99982 -10.92817 -10.56660 -10.36031 -9.26872 -8.21040 -6.31978 1.39202 1.39567 1.53139 2.40313 2.84522 3.00514 3.12262 3.34994 3.51762 3.87645 3.97680 4.05261 4.10859 4.13760 4.20371 4.28969 4.31933 4.40087 4.45833 4.55138 4.60972 4.75856 4.77014 4.82081 4.84936 4.91714 4.95037 5.00812 5.01051 5.05855 5.15380 5.22421 5.23229 5.25232 5.29209 5.39155 5.49940 5.52617 5.75373 5.85544 6.11255 6.27594 6.29901 6.54619 6.85345 7.37505 8.91122 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.004109 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.950267 B = 6812.768375 C = 7681.501681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.093 4.093 11 C 0.077 3.923 12 N -0.676 5.676 13 C 0.132 3.868 14 H 0.090 0.910 15 C -0.191 4.191 16 C -0.154 4.154 17 C -0.186 4.186 18 C -0.077 4.077 19 C -0.138 4.138 20 C 0.055 3.945 21 O -0.401 6.401 22 C 0.057 3.943 23 C -0.134 4.134 24 H 0.263 0.737 25 H -0.012 1.012 26 H -0.011 1.011 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.343 0.657 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.044 0.956 42 H 0.102 0.898 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -21.005 -0.032 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.131 4.131 11 C -0.052 4.052 12 N -0.305 5.305 13 C 0.022 3.978 14 H 0.108 0.892 15 C -0.211 4.211 16 C -0.191 4.191 17 C -0.224 4.224 18 C -0.096 4.096 19 C -0.176 4.176 20 C -0.021 4.021 21 O -0.321 6.321 22 C -0.020 4.020 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.063 0.937 42 H 0.120 0.880 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.675 -21.061 0.795 21.142 hybrid contribution -0.407 1.610 -1.207 2.053 sum 1.268 -19.450 -0.412 19.496 Atomic orbital electron populations 1.70110 1.07826 1.27671 1.51879 1.25985 0.95761 1.03378 0.94724 0.85401 0.79109 0.78747 0.77818 1.18564 1.20305 1.20335 1.21732 0.93516 0.92423 1.50273 0.92285 1.18944 0.94386 0.93223 0.94481 1.21390 0.97963 0.93265 1.00490 1.21745 0.94236 0.89930 0.99263 1.60696 1.16887 1.01126 1.51776 1.21183 0.93859 0.91606 0.91191 0.89193 1.22981 1.01354 1.04035 0.92771 1.23004 1.03032 0.90942 1.02144 1.22943 1.00320 1.02025 0.97065 1.21149 0.96779 0.97383 0.94312 1.22130 1.00206 0.96797 0.98443 1.22725 0.91546 1.02787 0.85065 1.87875 1.61013 1.35276 1.47895 1.22682 0.95208 0.85350 0.98733 1.22012 0.98280 1.02799 0.94039 0.92801 0.99364 0.99279 0.93027 0.93320 0.95913 0.92540 0.83890 0.89666 0.87524 0.88294 0.89547 0.88453 0.92964 0.89988 0.90552 0.87299 0.93719 0.88007 0.93960 0.91116 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.09 -3.88 5.38 30.59 0.16 -3.72 16 11 C 0.08 2.63 5.02 86.30 0.43 3.06 16 12 N -0.68 -18.03 5.75 -491.58 -2.83 -20.86 16 13 C 0.13 2.86 2.24 44.92 0.10 2.96 16 14 H 0.09 1.77 7.94 -2.39 -0.02 1.75 16 15 C -0.19 -4.05 2.63 -10.79 -0.03 -4.07 16 16 C -0.15 -2.51 10.07 30.62 0.31 -2.20 16 17 C -0.19 -3.71 10.00 30.62 0.31 -3.41 16 18 C -0.08 -1.72 1.56 -10.67 -0.02 -1.74 16 19 C -0.14 -2.48 5.12 30.68 0.16 -2.32 16 20 C 0.06 1.04 6.84 72.01 0.49 1.54 16 21 O -0.40 -9.38 10.77 -148.98 -1.60 -10.99 16 22 C 0.06 1.27 6.84 72.01 0.49 1.76 16 23 C -0.13 -3.04 5.21 30.69 0.16 -2.88 16 24 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 25 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.02 0.80 6.60 -2.39 -0.02 0.79 16 30 H 0.06 2.03 6.58 -2.39 -0.02 2.01 16 31 H 0.34 8.65 8.45 -89.69 -0.76 7.90 16 32 H 0.09 2.12 7.74 -2.38 -0.02 2.10 16 33 H 0.11 1.47 8.08 -2.39 -0.02 1.45 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.10 1.83 8.06 -2.38 -0.02 1.82 16 37 H 0.05 1.40 6.58 -2.39 -0.02 1.38 16 38 H 0.08 1.35 7.25 -2.39 -0.02 1.34 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 1.89 7.72 -2.39 -0.02 1.87 16 Total: -1.00 -64.34 349.88 1.47 -62.86 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.18 Total: 19.71 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.41 Total: -40.18 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -2.54 Total: -78.21 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.60 Total: -10.99 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.34 1.47 -62.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.141 kcal (2) G-P(sol) polarization free energy of solvation -64.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds