Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 C 1.53003 * 109.46830 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47238 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47316 * 180.02562 * 6 5 4 8 8 N 1.40126 * 126.49173 * 270.03039 * 7 6 5 9 9 N 1.28671 * 108.93699 * 179.97438 * 8 7 6 10 10 C 1.34845 * 109.63192 * 359.71473 * 9 8 7 11 11 C 1.41491 * 126.02006 * 180.28047 * 10 9 8 12 12 H 1.07997 * 120.00166 * 180.20097 * 11 10 9 13 13 C 1.39741 * 119.99917 * 0.19334 * 11 10 9 14 14 N 1.30981 * 120.00101 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99794 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47192 * 120.00643 * 15 13 11 18 18 H 1.48504 * 109.47091 * 239.99850 * 15 13 11 19 19 C 1.35017 * 126.49538 * 89.99477 * 7 6 5 20 20 C 1.50703 * 126.77139 * 0.02653 * 19 7 6 21 21 O 1.42898 * 109.47171 * 89.99915 * 20 19 7 22 22 C 1.42902 * 114.00186 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.47086 * 60.00201 * 1 2 3 24 24 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47075 * 299.99973 * 1 2 3 26 26 H 1.08997 * 109.47075 * 240.00027 * 2 1 3 27 27 H 1.08998 * 109.47086 * 119.99799 * 2 1 3 28 28 H 1.08997 * 109.47193 * 60.00098 * 3 2 1 29 29 H 1.08998 * 109.47045 * 299.99825 * 3 2 1 30 30 H 1.09006 * 109.47000 * 60.00106 * 4 3 2 31 31 H 1.08998 * 109.47419 * 299.99908 * 4 3 2 32 32 H 1.09006 * 109.46917 * 60.00298 * 5 4 3 33 33 H 1.08999 * 109.47818 * 300.00590 * 5 4 3 34 34 H 1.08997 * 109.47487 * 60.00616 * 6 5 4 35 35 H 1.08998 * 109.47086 * 300.00042 * 6 5 4 36 36 H 0.97000 * 120.00243 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.47152 * 329.99699 * 20 19 7 38 38 H 1.09001 * 109.46980 * 209.99799 * 20 19 7 39 39 H 1.09001 * 109.46918 * 299.99649 * 22 21 20 40 40 H 1.08999 * 109.46857 * 59.99535 * 22 21 20 41 41 H 1.08998 * 109.46946 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 7 6.0984 4.2662 0.0000 8 7 6.3756 5.0520 -1.1265 9 7 6.7843 6.2088 -0.7384 10 6 6.7949 6.2568 0.6091 11 6 7.1789 7.3661 1.3991 12 1 7.1531 7.2965 2.4765 13 6 7.5916 8.5517 0.7852 14 7 7.6225 8.6362 -0.5215 15 14 8.0991 10.0159 1.8283 16 1 7.9764 9.6657 3.2662 17 1 9.5078 10.3750 1.5251 18 1 7.2172 11.1709 1.5225 19 6 6.3660 5.0233 1.0854 20 6 6.2217 4.6141 2.5286 21 8 7.4465 4.0360 2.9845 22 6 7.4164 3.6111 4.3486 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8892 31 1 3.9330 0.9288 0.8908 32 1 3.7163 3.3993 0.8896 33 1 3.7170 3.3984 -0.8903 34 1 5.9734 2.3708 -0.8898 35 1 5.9733 2.3715 0.8902 36 1 7.9086 9.4593 -0.9476 37 1 5.4185 3.8829 2.6204 38 1 5.9864 5.4902 3.1329 39 1 7.2056 4.4662 4.9909 40 1 6.6381 2.8590 4.4777 41 1 8.3824 3.1837 4.6174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958540769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = 13.425502 kcal Electronic energy + Delta-G solvation = -20305.754143 eV Core-core repulsion = 17221.925387 eV Total energy + Delta-G solvation = -3083.828755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99801 -37.11004 -36.66864 -34.33249 -33.18694 -31.48799 -30.22081 -27.96824 -27.04603 -25.45435 -24.16675 -24.02667 -21.45683 -21.06480 -20.24284 -19.13003 -17.14398 -16.02665 -15.87175 -15.48684 -15.23520 -14.73243 -14.44230 -14.33343 -14.19060 -13.65893 -13.20702 -13.06510 -12.65121 -12.28699 -12.21114 -11.91458 -11.57652 -11.51509 -11.17628 -11.08855 -11.07618 -11.00127 -10.83405 -10.72124 -10.61905 -10.49078 -10.24203 -9.72163 -9.28974 -9.21857 -8.83005 -8.44309 -7.45013 -6.38005 -4.17413 2.70018 3.15876 3.21660 3.26018 3.62473 4.13937 4.25720 4.62670 4.65176 4.76951 4.91889 5.03702 5.27129 5.30159 5.32230 5.50228 5.57891 5.59586 5.61039 5.64860 5.68226 5.73112 5.74749 5.83878 5.88419 5.89179 5.97155 5.98842 6.02128 6.12679 6.20332 6.29177 6.43989 6.89323 7.15067 7.41365 7.51154 7.70356 8.18270 8.43764 8.81535 9.07730 10.20070 10.58362 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.004244 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.650215 B = 6595.962056 C = 7266.089885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.134 4.134 6 C 0.139 3.861 7 N -0.370 5.370 8 N -0.117 5.117 9 N -0.231 5.231 10 C 0.170 3.830 11 C -0.443 4.443 12 H 0.081 0.919 13 C 0.072 3.928 14 N -0.771 5.771 15 Si 0.908 3.092 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.130 4.130 20 C 0.168 3.832 21 O -0.387 6.387 22 C 0.032 3.968 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.272 0.728 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.031 0.969 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 -13.134 5.854 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.154 4.154 5 C -0.173 4.173 6 C 0.015 3.985 7 N -0.167 5.167 8 N -0.094 5.094 9 N -0.104 5.104 10 C 0.041 3.959 11 C -0.479 4.479 12 H 0.100 0.900 13 C -0.147 4.147 14 N -0.397 5.397 15 Si 0.734 3.266 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.259 4.259 20 C 0.091 3.909 21 O -0.306 6.306 22 C -0.066 4.066 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.501 -12.962 4.000 16.009 hybrid contribution 0.000 0.513 1.784 1.856 sum -8.502 -12.449 5.784 16.147 Atomic orbital electron populations 1.21783 0.96091 1.01355 1.01844 1.21539 0.95690 0.97119 1.01894 1.21614 0.95379 0.96503 1.02270 1.21529 0.95410 0.96314 1.02107 1.22005 0.95065 0.96942 1.03273 1.21377 0.93778 0.80347 1.03012 1.49400 1.50267 1.11207 1.05870 1.81450 1.20463 0.99392 1.08120 1.75137 1.14880 1.08316 1.12099 1.18987 0.96835 0.91897 0.88208 1.18609 1.41361 0.94542 0.93380 0.90047 1.25821 0.94190 0.99682 0.95044 1.70027 1.34030 1.26519 1.09165 0.86266 0.78620 0.80966 0.80791 1.18733 1.20151 1.20192 1.20859 1.22242 0.94730 0.88087 1.20247 0.85004 0.95791 0.89888 1.88104 1.36402 1.80274 1.25778 1.22641 1.01418 0.98091 0.84406 0.92768 0.92981 0.92796 0.92091 0.92144 0.92009 0.91905 0.91759 0.91942 0.91600 0.91108 0.89897 0.90307 0.91693 0.94652 0.91761 0.94327 0.95010 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.12 -1.17 5.21 -26.73 -0.14 -1.31 16 4 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 5 C -0.13 -1.89 5.54 -26.73 -0.15 -2.04 16 6 C 0.14 2.32 6.15 -4.04 -0.02 2.30 16 7 N -0.37 -8.49 3.63 -56.17 -0.20 -8.70 16 8 N -0.12 -3.14 13.74 60.35 0.83 -2.31 16 9 N -0.23 -6.91 10.56 32.05 0.34 -6.57 16 10 C 0.17 4.85 6.72 -85.02 -0.57 4.28 16 11 C -0.44 -12.41 9.11 -37.78 -0.34 -12.75 16 12 H 0.08 2.14 7.29 -52.49 -0.38 1.75 16 13 C 0.07 1.95 5.49 -17.35 -0.10 1.86 16 14 N -0.77 -22.13 11.92 55.54 0.66 -21.46 16 15 Si 0.91 19.84 29.56 -169.99 -5.02 14.82 16 16 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 19 C -0.13 -3.17 6.74 -80.90 -0.55 -3.72 16 20 C 0.17 3.35 5.80 36.01 0.21 3.56 16 21 O -0.39 -7.66 10.69 -35.23 -0.38 -8.04 16 22 C 0.03 0.44 11.01 101.05 1.11 1.55 16 23 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.21 7.77 -51.93 -0.40 0.81 16 36 H 0.27 7.12 8.30 -40.82 -0.34 6.78 16 37 H 0.04 0.60 7.84 -51.93 -0.41 0.19 16 38 H 0.06 1.26 7.55 -51.93 -0.39 0.87 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -32.91 345.14 -6.11 -39.02 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -7.06 Total: -2.33 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -0.48 Total: -9.64 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 1.63 Total: -39.04 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.38 Total: -8.04 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.91 -6.11 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.449 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds