Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 C 1.53003 * 109.46830 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47238 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47316 * 180.02562 * 6 5 4 8 8 N 1.40126 * 126.49173 * 270.03039 * 7 6 5 9 9 N 1.28671 * 108.93699 * 179.97438 * 8 7 6 10 10 C 1.34845 * 109.63192 * 359.71473 * 9 8 7 11 11 C 1.41491 * 126.02006 * 180.28047 * 10 9 8 12 12 H 1.07997 * 120.00166 * 180.20097 * 11 10 9 13 13 C 1.39741 * 119.99917 * 0.19334 * 11 10 9 14 14 N 1.30981 * 120.00101 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99794 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47192 * 120.00643 * 15 13 11 18 18 H 1.48504 * 109.47091 * 239.99850 * 15 13 11 19 19 C 1.35017 * 126.49538 * 89.99477 * 7 6 5 20 20 C 1.50703 * 126.77139 * 0.02653 * 19 7 6 21 21 O 1.42898 * 109.47171 * 89.99915 * 20 19 7 22 22 C 1.42902 * 114.00186 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.47086 * 60.00201 * 1 2 3 24 24 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47075 * 299.99973 * 1 2 3 26 26 H 1.08997 * 109.47075 * 240.00027 * 2 1 3 27 27 H 1.08998 * 109.47086 * 119.99799 * 2 1 3 28 28 H 1.08997 * 109.47193 * 60.00098 * 3 2 1 29 29 H 1.08998 * 109.47045 * 299.99825 * 3 2 1 30 30 H 1.09006 * 109.47000 * 60.00106 * 4 3 2 31 31 H 1.08998 * 109.47419 * 299.99908 * 4 3 2 32 32 H 1.09006 * 109.46917 * 60.00298 * 5 4 3 33 33 H 1.08999 * 109.47818 * 300.00590 * 5 4 3 34 34 H 1.08997 * 109.47487 * 60.00616 * 6 5 4 35 35 H 1.08998 * 109.47086 * 300.00042 * 6 5 4 36 36 H 0.97000 * 120.00243 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.47152 * 329.99699 * 20 19 7 38 38 H 1.09001 * 109.46980 * 209.99799 * 20 19 7 39 39 H 1.09001 * 109.46918 * 299.99649 * 22 21 20 40 40 H 1.08999 * 109.46857 * 59.99535 * 22 21 20 41 41 H 1.08998 * 109.46946 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 7 6.0984 4.2662 0.0000 8 7 6.3756 5.0520 -1.1265 9 7 6.7843 6.2088 -0.7384 10 6 6.7949 6.2568 0.6091 11 6 7.1789 7.3661 1.3991 12 1 7.1531 7.2965 2.4765 13 6 7.5916 8.5517 0.7852 14 7 7.6225 8.6362 -0.5215 15 14 8.0991 10.0159 1.8283 16 1 7.9764 9.6657 3.2662 17 1 9.5078 10.3750 1.5251 18 1 7.2172 11.1709 1.5225 19 6 6.3660 5.0233 1.0854 20 6 6.2217 4.6141 2.5286 21 8 7.4465 4.0360 2.9845 22 6 7.4164 3.6111 4.3486 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8892 31 1 3.9330 0.9288 0.8908 32 1 3.7163 3.3993 0.8896 33 1 3.7170 3.3984 -0.8903 34 1 5.9734 2.3708 -0.8898 35 1 5.9733 2.3715 0.8902 36 1 7.9086 9.4593 -0.9476 37 1 5.4185 3.8829 2.6204 38 1 5.9864 5.4902 3.1329 39 1 7.2056 4.4662 4.9909 40 1 6.6381 2.8590 4.4777 41 1 8.3824 3.1837 4.6174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958540769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = -8.149686 kcal Electronic energy + Delta-G solvation = -20306.689713 eV Core-core repulsion = 17221.925387 eV Total energy + Delta-G solvation = -3084.764325 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.93716 -38.57813 -37.66621 -35.77464 -34.94388 -32.89604 -31.97141 -29.33238 -28.46143 -26.98654 -25.90894 -25.25359 -22.59096 -22.08912 -21.86919 -20.87575 -19.06133 -17.34221 -17.20493 -17.00211 -16.70894 -16.32120 -15.82247 -15.76636 -15.43085 -14.80194 -14.63642 -14.05938 -13.83421 -13.78875 -13.51184 -13.24681 -12.87910 -12.85615 -12.74306 -12.45199 -12.39787 -12.24273 -12.03888 -11.87653 -11.72332 -11.66060 -11.56951 -11.35726 -11.18165 -10.90388 -10.50655 -10.31682 -9.47372 -8.34262 -6.24552 0.82794 1.43041 1.43751 1.59907 1.94275 2.27290 2.32771 3.14506 3.56428 3.72597 3.75237 4.03487 4.07847 4.12792 4.20453 4.34205 4.34692 4.41381 4.48728 4.59574 4.60707 4.66284 4.73576 4.81200 4.89558 4.92998 4.94050 5.05337 5.09246 5.11608 5.23534 5.24985 5.36115 5.44528 5.48629 5.52775 5.55552 6.29645 6.36782 6.42574 6.82463 7.04447 8.20828 8.65221 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.004244 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.650215 B = 6595.962056 C = 7266.089885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.120 4.120 4 C -0.106 4.106 5 C -0.122 4.122 6 C 0.124 3.876 7 N -0.351 5.351 8 N -0.155 5.155 9 N -0.284 5.284 10 C 0.123 3.877 11 C -0.476 4.476 12 H 0.090 0.910 13 C 0.020 3.980 14 N -0.822 5.822 15 Si 0.990 3.010 16 H -0.250 1.250 17 H -0.273 1.273 18 H -0.270 1.270 19 C -0.106 4.106 20 C 0.173 3.827 21 O -0.418 6.418 22 C 0.025 3.975 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.275 0.725 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.463 -15.089 8.457 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.144 4.144 5 C -0.161 4.161 6 C 0.003 3.997 7 N -0.147 5.147 8 N -0.131 5.131 9 N -0.155 5.155 10 C -0.009 4.009 11 C -0.512 4.512 12 H 0.108 0.892 13 C -0.195 4.195 14 N -0.450 5.450 15 Si 0.811 3.189 16 H -0.173 1.173 17 H -0.198 1.198 18 H -0.195 1.195 19 C -0.240 4.240 20 C 0.095 3.905 21 O -0.337 6.337 22 C -0.071 4.071 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.242 -14.982 6.568 18.789 hybrid contribution 0.147 0.832 1.073 1.366 sum -9.095 -14.150 7.641 18.475 Atomic orbital electron populations 1.21793 0.95741 1.01967 1.01701 1.21515 0.96017 0.95980 1.02452 1.21600 0.94734 0.97564 1.01825 1.21481 0.95870 0.93604 1.03408 1.21902 0.92744 0.99398 1.02085 1.21971 0.95644 0.77209 1.04888 1.49917 1.47286 1.12707 1.04826 1.81320 1.22869 0.99611 1.09332 1.75073 1.17168 1.09890 1.13320 1.19604 0.98874 0.94013 0.88414 1.18950 1.42947 0.95471 0.93807 0.89214 1.26830 0.93687 1.02705 0.96240 1.70179 1.35971 1.27547 1.11322 0.85052 0.78049 0.76597 0.79249 1.17267 1.19846 1.19493 1.21675 1.18046 0.93678 0.90566 1.20289 0.86322 0.97174 0.86712 1.88009 1.36054 1.80509 1.29117 1.22945 1.03556 0.99230 0.81393 0.93134 0.92015 0.92782 0.91787 0.91308 0.92111 0.92839 0.90962 0.90117 0.91970 0.93216 0.88666 0.87769 0.91524 0.90880 0.91587 0.93435 0.92180 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.72 5.93 30.59 0.18 -1.53 16 3 C -0.12 -2.06 5.21 30.60 0.16 -1.90 16 4 C -0.11 -1.92 5.21 30.59 0.16 -1.76 16 5 C -0.12 -3.23 5.54 30.59 0.17 -3.06 16 6 C 0.12 3.90 6.15 86.38 0.53 4.44 16 7 N -0.35 -16.05 3.63 -331.64 -1.20 -17.26 16 8 N -0.16 -8.62 13.74 37.02 0.51 -8.11 16 9 N -0.28 -17.80 10.56 -52.52 -0.55 -18.36 16 10 C 0.12 7.24 6.72 39.67 0.27 7.50 16 11 C -0.48 -27.33 9.11 23.44 0.21 -27.12 16 12 H 0.09 4.76 7.29 -2.91 -0.02 4.74 16 13 C 0.02 1.10 5.49 85.18 0.47 1.56 16 14 N -0.82 -49.43 11.92 21.80 0.26 -49.17 16 15 Si 0.99 41.52 29.56 68.60 2.03 43.55 16 16 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 19 C -0.11 -5.16 6.74 42.26 0.28 -4.87 16 20 C 0.17 6.46 5.80 71.24 0.41 6.88 16 21 O -0.42 -15.41 10.69 -148.98 -1.59 -17.01 16 22 C 0.02 0.60 11.01 113.37 1.25 1.84 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.10 2.81 7.77 -2.39 -0.02 2.79 16 36 H 0.27 15.09 8.30 -92.71 -0.77 14.32 16 37 H 0.07 2.17 7.84 -2.39 -0.02 2.15 16 38 H 0.07 2.45 7.55 -2.39 -0.02 2.43 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -75.93 345.14 5.24 -70.69 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.98 Total: 15.03 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.81 Total: -19.36 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -0.99 Total: -92.90 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -1.59 Total: -17.01 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -75.93 5.24 -70.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.539 kcal (2) G-P(sol) polarization free energy of solvation -75.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds