Wall clock time and date at job start Mon Mar 30 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00543 * 2 1 4 4 H 1.09002 * 109.46772 * 29.99427 * 3 2 1 5 5 C 1.52994 * 109.47367 * 149.99808 * 3 2 1 6 6 C 1.50699 * 109.46621 * 270.00144 * 3 2 1 7 7 C 1.39015 * 126.77391 * 315.01990 * 6 3 2 8 8 C 1.41489 * 126.02087 * 0.02562 * 7 6 3 9 9 H 1.08001 * 120.00051 * 353.82572 * 8 7 6 10 10 C 1.39734 * 120.00161 * 173.82341 * 8 7 6 11 11 N 1.30981 * 120.00149 * 5.87804 * 10 8 7 12 12 Si 1.86805 * 119.99985 * 185.87585 * 10 8 7 13 13 H 1.48501 * 109.47100 * 94.98637 * 12 10 8 14 14 H 1.48502 * 109.46873 * 214.98310 * 12 10 8 15 15 H 1.48497 * 109.47028 * 334.98152 * 12 10 8 16 16 N 1.34847 * 107.95779 * 179.97438 * 7 6 3 17 17 N 1.28663 * 109.63666 * 0.02562 * 16 7 6 18 18 N 1.35024 * 126.77161 * 134.70849 * 6 3 2 19 19 C 1.46500 * 126.49298 * 359.97438 * 18 6 3 20 20 H 1.09000 * 109.46692 * 0.02562 * 19 18 6 21 21 C 1.53005 * 109.47144 * 119.99633 * 19 18 6 22 22 C 1.52992 * 109.47209 * 240.00033 * 19 18 6 23 23 C 1.52995 * 109.47290 * 59.99705 * 22 19 18 24 24 C 1.52998 * 109.47363 * 180.02562 * 22 19 18 25 25 H 1.08995 * 109.46992 * 59.99828 * 1 2 3 26 26 H 1.09005 * 109.46904 * 300.00252 * 1 2 3 27 27 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47123 * 60.00455 * 5 3 2 29 29 H 1.09001 * 109.46749 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.47254 * 299.99983 * 5 3 2 31 31 H 0.97006 * 120.00735 * 179.97438 * 11 10 8 32 32 H 1.09004 * 109.46709 * 60.00188 * 21 19 18 33 33 H 1.09001 * 109.47277 * 179.97438 * 21 19 18 34 34 H 1.08997 * 109.47193 * 300.00306 * 21 19 18 35 35 H 1.09000 * 109.47373 * 299.99680 * 22 19 18 36 36 H 1.09007 * 109.47200 * 60.00323 * 23 22 19 37 37 H 1.09003 * 109.47512 * 179.97438 * 23 22 19 38 38 H 1.09001 * 109.47368 * 300.00450 * 23 22 19 39 39 H 1.09004 * 109.47069 * 300.00103 * 24 22 19 40 40 H 1.09008 * 109.47282 * 59.99756 * 24 22 19 41 41 H 1.08997 * 109.47479 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3589 1.2631 0.7212 6 6 2.2146 1.7641 -1.4208 7 6 2.7443 1.0189 -2.4680 8 6 3.1931 -0.3208 -2.3922 9 1 3.2331 -0.8236 -1.4372 10 6 3.5846 -0.9932 -3.5528 11 7 3.6463 -0.3510 -4.6926 12 14 4.0201 -2.8083 -3.4787 13 1 2.8280 -3.6184 -3.8364 14 1 5.1180 -3.0934 -4.4372 15 1 4.4607 -3.1559 -2.1039 16 7 2.7540 1.7973 -3.5691 17 7 2.2750 2.9567 -3.2831 18 7 1.9138 2.9783 -1.9293 19 6 1.3239 4.1054 -1.2028 20 1 1.1567 3.8204 -0.1641 21 6 2.2768 5.3013 -1.2559 22 6 -0.0096 4.4867 -1.8486 23 6 -0.9624 3.2908 -1.7955 24 6 -0.6254 5.6642 -1.0903 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.0242 0.5692 0.2074 29 1 3.8025 2.2588 0.7208 30 1 3.2111 0.9312 1.7489 31 1 3.9185 -0.8176 -5.4983 32 1 2.4445 5.5863 -2.2946 33 1 1.8377 6.1401 -0.7157 34 1 3.2268 5.0296 -0.7958 35 1 0.1581 4.7717 -2.8873 36 1 -1.1301 3.0057 -0.7568 37 1 -1.9126 3.5626 -2.2553 38 1 -0.5235 2.4522 -2.3361 39 1 -0.7930 5.3796 -0.0515 40 1 0.0536 6.5161 -1.1285 41 1 -1.5752 5.9361 -1.5507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:39 Heat of formation + Delta-G solvation = 29.345812 kcal Electronic energy + Delta-G solvation = -22039.333753 eV Core-core repulsion = 18956.195354 eV Total energy + Delta-G solvation = -3083.138399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15201 -37.22676 -36.90940 -33.26043 -32.24414 -31.20352 -29.31579 -28.49222 -26.86932 -25.87474 -25.00749 -23.57476 -22.48760 -21.07113 -19.32926 -18.86336 -16.98801 -15.99808 -15.73725 -14.93475 -14.71007 -14.40286 -14.36678 -14.09076 -13.54681 -13.06968 -12.79664 -12.72226 -12.26996 -12.16617 -12.00478 -11.89252 -11.65910 -11.44962 -11.20276 -11.09987 -11.07482 -10.79414 -10.70171 -10.68011 -10.60920 -10.20770 -10.06843 -9.65911 -9.16117 -9.08510 -8.67672 -8.35851 -7.31623 -6.27699 -4.02561 2.85983 3.23528 3.28148 3.32758 3.60552 4.23525 4.38863 4.49161 4.75856 5.00100 5.15318 5.31144 5.44590 5.49606 5.58195 5.64394 5.67950 5.71294 5.75287 5.84080 5.89770 5.91026 5.97739 6.01316 6.05967 6.12426 6.19180 6.28556 6.38309 6.39380 6.49059 6.53554 6.82553 7.03734 7.25909 7.37589 7.62003 7.95071 8.25355 8.67278 8.95034 9.22646 10.30709 10.69270 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.007136 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.161648 B = 3922.967733 C = 4393.663459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.195 3.805 4 H 0.040 0.960 5 C -0.139 4.139 6 C -0.154 4.154 7 C 0.173 3.827 8 C -0.432 4.432 9 H 0.089 0.911 10 C 0.070 3.930 11 N -0.779 5.779 12 Si 0.904 3.096 13 H -0.275 1.275 14 H -0.282 1.282 15 H -0.264 1.264 16 N -0.235 5.235 17 N -0.122 5.122 18 N -0.366 5.366 19 C 0.168 3.832 20 H 0.083 0.917 21 C -0.159 4.159 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.145 4.145 25 H 0.038 0.962 26 H 0.027 0.973 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 6.773 9.999 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.134 3.866 4 H 0.058 0.942 5 C -0.197 4.197 6 C -0.284 4.284 7 C 0.044 3.956 8 C -0.468 4.468 9 H 0.107 0.893 10 C -0.148 4.148 11 N -0.406 5.406 12 Si 0.730 3.270 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.188 1.188 16 N -0.108 5.108 17 N -0.099 5.099 18 N -0.164 5.164 19 C 0.063 3.937 20 H 0.101 0.899 21 C -0.217 4.217 22 C -0.122 4.122 23 C -0.201 4.201 24 C -0.203 4.203 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.354 7.380 8.446 12.891 hybrid contribution -0.172 -1.107 0.879 1.424 sum -6.526 6.272 9.325 12.996 Atomic orbital electron populations 1.22634 0.82652 1.01830 0.98864 1.88018 1.18208 1.27141 1.94460 1.19723 0.93952 0.83756 0.89123 0.94171 1.21787 0.96694 1.02296 0.98950 1.21760 1.19678 0.89016 0.97978 1.18916 0.96753 0.94630 0.85319 1.18691 1.39488 0.94040 0.94621 0.89308 1.25827 0.94204 0.99490 0.95261 1.70042 1.34946 1.36268 0.99310 0.86376 0.78347 0.83506 0.78800 1.20059 1.20786 1.18785 1.75135 1.14834 0.96912 1.23906 1.81413 1.19506 1.18195 0.90781 1.49472 1.47732 1.09574 1.09613 1.20993 0.92381 0.85706 0.94592 0.89938 1.22160 0.99218 0.96924 1.03403 1.21428 0.93965 0.95724 1.01076 1.21794 0.98576 0.98447 1.01277 1.21883 1.00662 0.97696 1.00027 0.94302 0.95489 0.90367 0.90426 0.92269 0.92981 0.92016 0.91276 0.91460 0.92378 0.89949 0.93323 0.92947 0.91914 0.92800 0.92201 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.81 101.05 1.09 1.70 16 2 O -0.36 -7.25 8.89 -35.23 -0.31 -7.56 16 3 C 0.19 3.73 2.87 -27.89 -0.08 3.65 16 4 H 0.04 0.68 6.30 -51.93 -0.33 0.35 16 5 C -0.14 -2.43 9.54 37.15 0.35 -2.07 16 6 C -0.15 -3.54 6.04 -80.90 -0.49 -4.03 16 7 C 0.17 4.78 6.68 -85.02 -0.57 4.21 16 8 C -0.43 -12.01 8.62 -37.79 -0.33 -12.34 16 9 H 0.09 2.39 6.54 -52.49 -0.34 2.05 16 10 C 0.07 1.92 5.49 -17.36 -0.10 1.83 16 11 N -0.78 -22.48 11.95 55.54 0.66 -21.82 16 12 Si 0.90 20.36 29.56 -169.99 -5.03 15.34 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 16 N -0.24 -6.84 10.58 32.05 0.34 -6.50 16 17 N -0.12 -3.14 13.62 60.35 0.82 -2.32 16 18 N -0.37 -7.84 2.52 -49.74 -0.13 -7.96 16 19 C 0.17 2.69 2.65 -67.93 -0.18 2.51 16 20 H 0.08 1.21 6.51 -51.93 -0.34 0.87 16 21 C -0.16 -2.26 9.11 37.16 0.34 -1.92 16 22 C -0.10 -1.47 2.64 -90.63 -0.24 -1.71 16 23 C -0.14 -2.15 9.04 37.16 0.34 -1.81 16 24 C -0.14 -1.53 8.84 37.16 0.33 -1.20 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 1.53 7.65 -51.93 -0.40 1.13 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.27 7.18 8.30 -40.82 -0.34 6.84 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 1.19 7.60 -51.93 -0.39 0.80 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.57 6.43 -51.92 -0.33 0.24 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -31.96 334.18 -4.80 -36.76 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.67 Total: 0.21 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 0.47 Total: -11.19 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 1.70 Total: -38.60 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.31 Total: -7.56 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.96 -4.80 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.109 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds